Timeline



Jun 20, 2017:

1:55 PM Ticket #982 (Re-design the current pipeline) updated by Nicklas Nordborg
Description changed
1:53 PM Ticket #985 (Re-design the gene report generator so that it can produce the report ...) created by Nicklas Nordborg
This is part of #982. The pilot and gene report plug-in currently …
1:50 PM Ticket #984 (Remove the raw data import step for Cufflinks data) created by Nicklas Nordborg
This is part of #982. The import is currently triggered automatically …
1:48 PM Ticket #983 (Merge the Tophat alignment and Cufflinks job to a single job) created by Nicklas Nordborg
This is part of #982. The Tophat and Cufflinks steps in the secondary …
1:36 PM Ticket #982 (Re-design the current pipeline) created by Nicklas Nordborg
The current pipeline is going to be replaced by a new and more modern …
1:27 PM Ticket #981 (Project archive need to use subfolders per site) created by Nicklas Nordborg
The main reason is that we need to be able to split the data onto …
1:21 PM Ticket #980 (Remove Tophat-alignment data files from release exporter) created by Nicklas Nordborg
We need to save disk space. Not copying BAM files will save a lot.
1:18 PM Ticket #979 (Define and import Pilot report annotations) created by Nicklas Nordborg
Scores and other values that are calculated as part of generating the …
1:05 PM Ticket #971 (Storage box creation wizard) updated by Nicklas Nordborg
Milestone changed
12:59 PM Changeset [4533] by Nicklas Nordborg
Preparing for future release Relax 1.1
12:58 PM PluginDownload edited by Nicklas Nordborg
Released Relax 1.0 (diff)
12:55 PM Milestone Relax v1.0 completed
See Relax extension page for more information.
12:54 PM relax-1.0.tar.gz attached to net.sf.basedb.relax by Nicklas Nordborg
Relax 1.0
12:54 PM net.sf.basedb.relax created by Nicklas Nordborg
Released Relax 1.0
11:54 AM Changeset [4532] by Nicklas Nordborg
Tagging Relax 1.0
11:53 AM Changeset [4531] by Nicklas Nordborg
Preparing to release Relax 1.0
11:48 AM Changeset [4530] by Nicklas Nordborg
Preparing for future release Reggie 4.11
11:46 AM Milestone Reggie v4.10 completed
See Reggie extension page for more information.
11:45 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.10 (diff)
11:44 AM net.sf.basedb.reggie edited by Nicklas Nordborg
(diff)
11:43 AM reggie-4.10.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.10
11:43 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.10 (diff)
11:39 AM Changeset [4529] by Nicklas Nordborg
Tagging Reggie 4.10
11:38 AM Changeset [4528] by Nicklas Nordborg
Preparing to release Reggie 4.10
11:34 AM Ticket #940 (Release importer) closed by Nicklas Nordborg
fixed
11:34 AM Ticket #938 (Release exporter should export files that can be imported on a ...) closed by Nicklas Nordborg
fixed
11:22 AM Ticket #971 (Storage box creation wizard) updated by Nicklas Nordborg
Description changed
8:29 AM Ticket #978 (Re-design the Lab sensor alarms page) updated by Nicklas Nordborg
(In [4527]) References #978: Re-design the Lab sensor alarms page
8:29 AM Changeset [4527] by Nicklas Nordborg
References #978: Re-design the Lab sensor alarms page

Jun 19, 2017:

1:48 PM Ticket #978 (Re-design the Lab sensor alarms page) created by Nicklas Nordborg
Make similar changes to this page as made in #977 to the Lab sensor …
8:45 AM Ticket #977 (Re-design the Lab-sensor info page) updated by Nicklas Nordborg
(In [4526]) References #977: Re-design the Lab-sensor info page …
8:45 AM Changeset [4526] by Nicklas Nordborg
References #977: Re-design the Lab-sensor info page Changed the daily …

Jun 15, 2017:

2:05 PM Ticket #977 (Re-design the Lab-sensor info page) updated by Nicklas Nordborg
(In [4525]) References #977: Re-design the Lab-sensor info page Added …
2:05 PM Changeset [4525] by Nicklas Nordborg
References #977: Re-design the Lab-sensor info page Added a link for …
9:49 AM Ticket #977 (Re-design the Lab-sensor info page) updated by Nicklas Nordborg
(In [4524]) References #977: Re-design the Lab-sensor info page …
9:49 AM Changeset [4524] by Nicklas Nordborg
References #977: Re-design the Lab-sensor info page Sensor …
8:20 AM Ticket #977 (Re-design the Lab-sensor info page) created by Nicklas Nordborg
This could be a table that displays information about the configured …

Jun 13, 2017:

11:39 AM Ticket #969 (Changes to Frozen tissue date import wizard) updated by Nicklas Nordborg
(In [4523]) References #969: Changes to Frozen tissue date import …
11:39 AM Changeset [4523] by Nicklas Nordborg
References #969: Changes to Frozen tissue date import wizard Removed …
9:35 AM Ticket #975 (Clean up unused javascript code) closed by Nicklas Nordborg
fixed: (In [4522]) Fixes #975: Clean up unused javascript code
9:35 AM Changeset [4522] by Nicklas Nordborg
Fixes #975: Clean up unused javascript code
8:57 AM Ticket #976 (Running 'ant update-version' doesn't update the version number in labenv.js) closed by Nicklas Nordborg
fixed: (In [4521]) Fixes #976: Running 'ant update-version' doesn't update …
8:57 AM Changeset [4521] by Nicklas Nordborg
Fixes #976: Running 'ant update-version' doesn't update the version …
8:56 AM Ticket #976 (Running 'ant update-version' doesn't update the version number in labenv.js) created by Nicklas Nordborg
8:53 AM Ticket #974 (A project should not be required) closed by Nicklas Nordborg
fixed: (In [4520]) Fixes #974: A project should not be required
8:53 AM Changeset [4520] by Nicklas Nordborg
Fixes #974: A project should not be required
8:52 AM Ticket #974 (A project should not be required) updated by Nicklas Nordborg
Owner, Component changed
8:52 AM Ticket #975 (Clean up unused javascript code) created by Nicklas Nordborg
The labenv.js file is full of code that was copied from Reggie. Much …
8:50 AM Ticket #974 (A project should not be required) created by Nicklas Nordborg
If going to a LabEnv wizard without an active project an error …
8:47 AM Ticket #973 (Update to Hibernate 5.2 and BASE 3.12) updated by Nicklas Nordborg
Milestone changed
8:45 AM Ticket #973 (Update to Hibernate 5.2 and BASE 3.12) updated by Nicklas Nordborg
(In [4519]) References #973: Update to Hibernate 5.2 and BASE 3.12 …
8:45 AM Changeset [4519] by Nicklas Nordborg
References #973: Update to Hibernate 5.2 and BASE 3.12 Changed to …
8:34 AM Ticket #973 (Update to Hibernate 5.2 and BASE 3.12) updated by Nicklas Nordborg
Summary changed

Jun 12, 2017:

10:27 AM Ticket #973 (Update to Hibernate 5.2 and BASE 3.12) created by Nicklas Nordborg
LabEnv doesn't work with Hibernate 5.2. It seems like nothing is …

Jun 7, 2017:

8:35 AM Ticket #938 (Release exporter should export files that can be imported on a ...) updated by Nicklas Nordborg
(In [4518]) References #938. Fixed echo commands in scripts so that …
8:35 AM Changeset [4518] by Nicklas Nordborg
References #938. Fixed echo commands in scripts so that variables …

Jun 2, 2017:

1:37 PM Ticket #968 (Keep LiasonComment in some cases when destructing retracted items) closed by Nicklas Nordborg
fixed
1:12 PM Ticket #969 (Changes to Frozen tissue date import wizard) closed by Nicklas Nordborg
fixed

Jun 1, 2017:

2:32 PM Ticket #972 (Fix problems with bad URLs) closed by Nicklas Nordborg
fixed: (In [4517]) Fixes #972: Fix problems with bad URLs Found the problem …
2:32 PM Changeset [4517] by Nicklas Nordborg
Fixes #972: Fix problems with bad URLs Found the problem in the …
10:59 AM Ticket #972 (Fix problems with bad URLs) created by Nicklas Nordborg
See http://base.thep.lu.se/ticket/2089
9:21 AM Ticket #970 (Specimen tube registration: Limit the value in "Number of tubes" to a ...) closed by Nicklas Nordborg
fixed: (In [4516]) Fixes #970: Specimen tube registration: Limit the value in …
9:21 AM Changeset [4516] by Nicklas Nordborg
Fixes #970: Specimen tube registration: Limit the value in "Number of …
8:53 AM Ticket #939 (Installation wizard for Relax server) closed by Nicklas Nordborg
fixed
8:52 AM Ticket #939 (Installation wizard for Relax server) updated by Nicklas Nordborg
(In [4515]) References #939: Installation wizard for Relax server …
8:52 AM Changeset [4515] by Nicklas Nordborg
References #939: Installation wizard for Relax server Added a raw …
8:38 AM Ticket #939 (Installation wizard for Relax server) updated by Nicklas Nordborg
Description changed
8:33 AM Ticket #939 (Installation wizard for Relax server) updated by Nicklas Nordborg
(In [4514]) References #939: Installation wizard for Relax server …
8:33 AM Changeset [4514] by Nicklas Nordborg
References #939: Installation wizard for Relax server Checking that …
8:29 AM Ticket #971 (Storage box creation wizard) created by Nicklas Nordborg
We should implement a wizard that can be used to create new storage …
8:19 AM Ticket #970 (Specimen tube registration: Limit the value in "Number of tubes" to a ...) created by Nicklas Nordborg
If someone accidentally puts in a very high number here it will cause …

May 31, 2017:

12:49 PM Ticket #938 (Release exporter should export files that can be imported on a ...) updated by Nicklas Nordborg
(In [4513]) References #938. Added support for re-naming annotation …
12:49 PM Changeset [4513] by Nicklas Nordborg
References #938. Added support for re-naming annotation types that are …
9:50 AM Changeset [4512] by Nicklas Nordborg
Merge changes in 4.9-stable branch made after Reggie 4.9.4 to the …
9:46 AM Tickets #968,​969 batch updated by Nicklas Nordborg
Milestone changed
Moving to Reggie 4.10 since it will be released soon.
9:35 AM Ticket #969 (Changes to Frozen tissue date import wizard) updated by Nicklas Nordborg
(In [4511]) References #969: Changes to Frozen tissue date import …
9:35 AM Changeset [4511] by Nicklas Nordborg
References #969: Changes to Frozen tissue date import wizard Added …
9:20 AM Ticket #969 (Changes to Frozen tissue date import wizard) updated by Nicklas Nordborg
(In [4510]) References #969: Changes to Frozen tissue date import …
9:20 AM Changeset [4510] by Nicklas Nordborg
References #969: Changes to Frozen tissue date import wizard The …

May 29, 2017:

2:00 PM Ticket #969 (Changes to Frozen tissue date import wizard) updated by Nicklas Nordborg
Status, Milestone changed
1:59 PM Ticket #968 (Keep LiasonComment in some cases when destructing retracted items) updated by Nicklas Nordborg
(In [4509]) References #968: Keep LiasonComment in some cases when …
1:59 PM Changeset [4509] by Nicklas Nordborg
References #968: Keep LiasonComment in some cases when destructing …
8:49 AM Ticket #969 (Changes to Frozen tissue date import wizard) updated by Nicklas Nordborg
Description changed
8:46 AM xls2tsv.png attached to Ticket #969 by Nicklas Nordborg
8:46 AM Ticket #969 (Changes to Frozen tissue date import wizard) created by Nicklas Nordborg
* The import should work with the complete TAB-separated file. The …
8:22 AM Ticket #968 (Keep LiasonComment in some cases when destructing retracted items) updated by Nicklas Nordborg
Description changed

May 24, 2017:

1:26 PM Ticket #939 (Installation wizard for Relax server) updated by Nicklas Nordborg
Description changed

May 23, 2017:

8:48 AM Ticket #968 (Keep LiasonComment in some cases when destructing retracted items) updated by Nicklas Nordborg
Description changed
8:48 AM Ticket #968 (Keep LiasonComment in some cases when destructing retracted items) created by Nicklas Nordborg
The LiasonComment annotation can be present on Patient, Case, …
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