Timeline



Mar 31, 2017:

1:42 PM Changeset [4439] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
12:43 PM Changeset [4438] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
10:54 AM Changeset [4437] by Nicklas Nordborg
References #938: Release exporter should export files that can be …

Mar 30, 2017:

9:14 AM Changeset [4436] by Nicklas Nordborg
References #940: Release importer Raw bioassays are created with the …
9:13 AM Changeset [4435] by Nicklas Nordborg
References #938: Release exporter should export files that can be …

Mar 29, 2017:

2:22 PM Changeset [4434] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
2:13 PM Changeset [4433] by Nicklas Nordborg
References #940: Release importer Removed debug code. Default value …
9:09 AM Changeset [4432] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
9:08 AM Changeset [4431] by Nicklas Nordborg
References #933: Add support for exporting files to a remote server to …

Mar 28, 2017:

3:27 PM Changeset [4430] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
12:41 PM Changeset [4429] by Nicklas Nordborg
References #940: Release importer The release version number is now …
9:50 AM Changeset [4428] by Nicklas Nordborg
References #938: Release exporter should export files that can be …

Mar 27, 2017:

2:54 PM Changeset [4427] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
11:46 AM Changeset [4426] by Nicklas Nordborg
Merged Reggie 4.9.3 to the trunk.
11:37 AM Milestone Reggie v4.9.3 completed
Bug fixes for Reggie 4.9.2. Revision Log: …
11:37 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.9.3 (diff)
11:37 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.9.3 (diff)
11:36 AM reggie-4.9.3.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.9.3
11:34 AM Changeset [4425] by Nicklas Nordborg
Tagging Reggie 4.9.3
11:33 AM Changeset [4424] by Nicklas Nordborg
Preparing to release Reggie 4.9.3
11:30 AM Changeset [4423] by Nicklas Nordborg
References #938: Release exporter should export files that can be …

Mar 24, 2017:

2:59 PM Changeset [4422] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
10:39 AM Changeset [4421] by Nicklas Nordborg
References #938: Release exporter should export files that can be …

Mar 23, 2017:

1:55 PM Changeset [4420] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
8:35 AM Ticket #953 (Remove "unmapped.bam" file from Tophat results) closed by Nicklas Nordborg
fixed: (In [4419]) Fixes #953: Remove "unmapped.bam" file from Tophat results …
8:35 AM Changeset [4419] by Nicklas Nordborg
Fixes #953: Remove "unmapped.bam" file from Tophat results Remove the …

Mar 22, 2017:

2:14 PM Ticket #955 (fix_cufflinks_tracking_id.sh should be executed on transcripts.gtf) closed by Nicklas Nordborg
fixed: (In [4418]) Fixes #955: fix_cufflinks_tracking_id.sh should be …
2:14 PM Changeset [4418] by Nicklas Nordborg
Fixes #955: fix_cufflinks_tracking_id.sh should be executed on …
1:26 PM Ticket #954 (The AddOrReplaceReadGroup step in Tophat alignment should replace ...) closed by Nicklas Nordborg
fixed: (In [4417]) Fixes #954: The AddOrReplaceReadGroup? step in Tophat …
1:26 PM Changeset [4417] by Nicklas Nordborg
Fixes #954: The AddOrReplaceReadGroup? step in Tophat alignment should …
12:43 PM Ticket #955 (fix_cufflinks_tracking_id.sh should be executed on transcripts.gtf) created by Nicklas Nordborg
After Cufflinks has produced the result files we run the …
12:37 PM Ticket #954 (The AddOrReplaceReadGroup step in Tophat alignment should replace ...) created by Nicklas Nordborg
This will make it easier to publish data files to external researchers …
12:35 PM Ticket #953 (Remove "unmapped.bam" file from Tophat results) created by Nicklas Nordborg
This file is not used anymore and just takes up space on the disk. …
12:27 PM Ticket #952 (The "Register Caliper files" checkbox in the "Library registration" ...) closed by Nicklas Nordborg
fixed: (In [4416]) Fixes #952: The "Register Caliper files" checkbox in the …
12:27 PM Changeset [4416] by Nicklas Nordborg
Fixes #952: The "Register Caliper files" checkbox in the "Library …
12:25 PM Ticket #952 (The "Register Caliper files" checkbox in the "Library registration" ...) created by Nicklas Nordborg
This checkbox is currently checked except for the NeoPrep track, but …
12:23 PM Ticket #950 (New pool layouts: 1x24 and 2x24 with offset) closed by Nicklas Nordborg
fixed: (In [4415]) Fixes #950: New pool layouts: 1x24 and 2x24 with offset
12:23 PM Changeset [4415] by Nicklas Nordborg
Fixes #950: New pool layouts: 1x24 and 2x24 with offset
8:30 AM Ticket #951 (BA PDF file should be optional in the "mRNA registration and quality ...) closed by Nicklas Nordborg
fixed: (In [4414]) Fixes #951: BA PDF file should be optional in the "mRNA …
8:30 AM Changeset [4414] by Nicklas Nordborg
Fixes #951: BA PDF file should be optional in the "mRNA registration …
8:15 AM Ticket #951 (BA PDF file should be optional in the "mRNA registration and quality ...) created by Nicklas Nordborg
This is currently a required field, but the BioAnalyzer step is not …
8:11 AM Ticket #950 (New pool layouts: 1x24 and 2x24 with offset) created by Nicklas Nordborg
Now that we are going back to manual library preparation we are not …

Mar 21, 2017:

1:44 PM Changeset [4413] by Nicklas Nordborg
References #940: Release importer Importing files that are linked …
1:44 PM Changeset [4412] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
11:21 AM Changeset [4411] by Nicklas Nordborg
References #940: Release importer Importing from the new …
11:18 AM Changeset [4410] by Nicklas Nordborg
References #938: Release exporter should export files that can be …

Mar 20, 2017:

1:50 PM Changeset [4409] by Nicklas Nordborg
References #939: Installation wizard for Relax server Added subtypes …
1:49 PM Changeset [4408] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
1:09 PM Changeset [4407] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
10:22 AM Changeset [4406] by Nicklas Nordborg
References #939: Installation wizard for Relax server Added …
9:20 AM Changeset [4405] by Nicklas Nordborg
References #940: Release importer Importing and creating files in the …

Mar 17, 2017:

2:52 PM Changeset [4404] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
11:09 AM Changeset [4403] by Nicklas Nordborg
References #940: Release importer Importing the DataFilesFolder
11:04 AM Changeset [4402] by Nicklas Nordborg
References #938: Release exporter should export files that can be …

Mar 16, 2017:

9:34 AM Changeset [4401] by Nicklas Nordborg
References #941: Create the Relax extension Use the active roles to …
9:32 AM Changeset [4400] by Nicklas Nordborg
References #940: Release importer Added MergedSequences subtype.
9:32 AM Changeset [4399] by Nicklas Nordborg
References #940: Release importer Added MergedSequences subtype.
9:31 AM Changeset [4398] by Nicklas Nordborg
References #938: Release exporter should export files that can be …

Mar 13, 2017:

3:33 PM Changeset [4397] by Nicklas Nordborg
References #940: Release importer Importing the creation date.
3:33 PM Changeset [4396] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
12:25 PM Changeset [4395] by Nicklas Nordborg
References #940: Release importer Importing the registration date.
12:24 PM Changeset [4394] by Nicklas Nordborg
References #938: Release exporter should export files that can be …

Mar 10, 2017:

2:11 PM Changeset [4393] by Nicklas Nordborg
References #940: Release importer More cleanup.
12:50 PM Ticket #949 (Update SSHj and Bouncy castle) closed by Nicklas Nordborg
fixed: (In [4392]) Fixes #949: Update SSHj and Bouncy castle SSHj updated to …
12:50 PM Changeset [4392] by Nicklas Nordborg
Fixes #949: Update SSHj and Bouncy castle SSHj updated to version …
11:41 AM Ticket #949 (Update SSHj and Bouncy castle) created by Nicklas Nordborg
I had problems connecting to some servers with SFTP. Seems to go away …
9:56 AM Changeset [4391] by Nicklas Nordborg
References #940: Release importer Revert back to using real file …

Mar 9, 2017:

9:04 PM Changeset [4390] by Nicklas Nordborg
References #940: Release importer Support for setting the …
9:02 PM Changeset [4389] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
2:14 PM Changeset [4388] by Nicklas Nordborg
References #940: Release importer Moved some of the annotation type …
1:20 PM Changeset [4387] by Nicklas Nordborg
References #940: Release importer The plug-in now checks that a …
11:46 AM Changeset [4386] by Nicklas Nordborg
References #940: Release importer Started to clean up the code. Error …

Mar 8, 2017:

3:17 PM Changeset [4385] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
12:56 PM Changeset [4384] by Nicklas Nordborg
References #940: Release importer Added support for importing …

Mar 7, 2017:

3:46 PM Changeset [4383] by Nicklas Nordborg
References #940: Release importer Now reads the files.json (see …
3:43 PM Changeset [4382] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
11:46 AM Changeset [4381] by Nicklas Nordborg
References #940: Release importer Added support for importing …

Mar 6, 2017:

3:30 PM Changeset [4380] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
2:25 PM Changeset [4379] by Nicklas Nordborg
References #938: Release exporter should export files that can be …

Mar 3, 2017:

12:23 PM Changeset [4378] by Nicklas Nordborg
References #938: Release exporter should export files that can be …

Mar 2, 2017:

1:44 PM Changeset [4377] by Nicklas Nordborg
Merged Reggie 4.9.2 to the trunk
1:41 PM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.9.2 (diff)
1:40 PM Milestone Reggie v4.9.2 completed
Bug fixes for Reggie 4.9.1. Revision Log: …
1:39 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.9.2 (diff)
1:38 PM reggie-4.9.2.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.9.2
1:36 PM Changeset [4376] by Nicklas Nordborg
Tagging Reggie 4.9.2
1:36 PM Changeset [4375] by Nicklas Nordborg
Preparing to release Reggie 4.9.2
12:56 PM Ticket #948 (Can't create mRNA plate with External RNA or Stratagene) closed by Nicklas Nordborg
fixed: (In [4374]) Fixes #948: Can't create mRNA plate with External RNA or …
12:56 PM Changeset [4374] by Nicklas Nordborg
Fixes #948: Can't create mRNA plate with External RNA or Stratagene …
11:55 AM Ticket #948 (Can't create mRNA plate with External RNA or Stratagene) created by Nicklas Nordborg
If there is at least one location with either the "External" RNA item …
11:24 AM Ticket #947 (Demux fails if all barcodes have been used) closed by Nicklas Nordborg
fixed: (In [4373]) Fixes #947: Demux fails if all barcodes have been used If …
11:24 AM Changeset [4373] by Nicklas Nordborg
Fixes #947: Demux fails if all barcodes have been used If we don't …
10:38 AM Ticket #947 (Demux fails if all barcodes have been used) created by Nicklas Nordborg
Stack trace: […] The NullPointerException happens because there …
8:37 AM Changeset [4372] by Nicklas Nordborg
References #940: Release importer Started to refactor the release …
8:35 AM Changeset [4371] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
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