Timeline



Jun 10, 2016:

2:11 PM Ticket #892 (Add support for enforcing YubiKey login depending on client) closed by Nicklas Nordborg
fixed: (In [3993]) Fixes #892: Add support for enforcing YubiKey login …
2:11 PM Changeset [3993] by Nicklas Nordborg
Fixes #892: Add support for enforcing YubiKey login depending on …
1:17 PM Ticket #895 (Switch to Java 8 and BASE 3.9) updated by Nicklas Nordborg
(In [3992]) Fixes #895: Switch to Java 8 and BASE 3.9 Updated README file.
1:17 PM Changeset [3992] by Nicklas Nordborg
Fixes #895: Switch to Java 8 and BASE 3.9 Updated README file.
1:16 PM Ticket #894 (Update YubiKey JAR file) closed by Nicklas Nordborg
fixed: (In [3991]) Fixes #894: Update YubiKey JAR file We are now using the …
1:16 PM Changeset [3991] by Nicklas Nordborg
Fixes #894: Update YubiKey JAR file We are now using the …
12:58 PM Ticket #895 (Switch to Java 8 and BASE 3.9) closed by Nicklas Nordborg
fixed: (In [3990]) Fixes #895: Switch to Java 8 and BASE 3.9 Switched to …
12:58 PM Changeset [3990] by Nicklas Nordborg
Fixes #895: Switch to Java 8 and BASE 3.9 Switched to BASE 3.9.
12:52 PM Ticket #895 (Switch to Java 8 and BASE 3.9) updated by Nicklas Nordborg
(In [3989]) References #895: Switch to Java 8 and BASE 3.9 Updated to …
12:52 PM Changeset [3989] by Nicklas Nordborg
References #895: Switch to Java 8 and BASE 3.9 Updated to Java 8.
12:49 PM Ticket #895 (Switch to Java 8 and BASE 3.9) created by Nicklas Nordborg
Better to do this as well before releasing the next version.
11:43 AM Ticket #894 (Update YubiKey JAR file) created by Nicklas Nordborg
It seems like there is a new version (3.0.1) of the YubiKey API …
11:40 AM Ticket #893 (Add support for using login+password+yubikey otp when logging in) created by Nicklas Nordborg
The regular web client only has support for two input fields in the …
11:33 AM Ticket #892 (Add support for enforcing YubiKey login depending on client) created by Nicklas Nordborg
#609 added support for not using YubiKey login when certain client …
11:20 AM Ticket #891 (Report delivery system) updated by Nicklas Nordborg
(In [3988]) References #891: Report delivery system Added ClientApp
11:20 AM Changeset [3988] by Nicklas Nordborg
References #891: Report delivery system Added ClientApp class for …
11:00 AM Ticket #891 (Report delivery system) updated by Nicklas Nordborg
(In [3987]) References #891: Report delivery system The "SCAN-B …
11:00 AM Changeset [3987] by Nicklas Nordborg
References #891: Report delivery system The "SCAN-B Delivery" group …
9:44 AM Ticket #891 (Report delivery system) updated by Nicklas Nordborg
(In [3986]) References #891: Report delivery system Added two new …
9:44 AM Changeset [3986] by Nicklas Nordborg
References #891: Report delivery system Added two new groups "SCAN-B …
9:23 AM Ticket #891 (Report delivery system) updated by Nicklas Nordborg
Priority, Status, Milestone changed

Jun 9, 2016:

3:05 PM net.sf.basedb.reggie/HistoryOfReggie edited by Nicklas Nordborg
(diff)
3:05 PM reggie-4.5.png attached to net.sf.basedb.reggie/HistoryOfReggie by Nicklas Nordborg
Reggie 4.5
2:59 PM Changeset [3985] by Nicklas Nordborg
Preparing for future release Reggie 4.6
2:57 PM Milestone Reggie v4.5 completed
See Reggie extension page for more information.
2:56 PM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.5 (diff)
2:56 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.5 (diff)
2:55 PM reggie-4.5.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.5
2:54 PM Tickets #887,​890 batch updated by Nicklas Nordborg
fixed
2:52 PM Changeset [3984] by Nicklas Nordborg
Tagging Reggie 4.5
2:51 PM Changeset [3983] by Nicklas Nordborg
Preparing to release Reggie 4.5

Jun 7, 2016:

4:14 PM Ticket #888 (INCA statistics) updated by olle
(In [3982]) Refs #888. INCA statistics user interface updated in step …
4:14 PM Changeset [3982] by olle
Refs #888. INCA statistics user interface updated in step 1 by …
3:39 PM Ticket #888 (INCA statistics) closed by olle
fixed: Ticket closed as first version of the INCA statistics have been …
9:19 AM Ticket #891 (Report delivery system) created by Nicklas Nordborg
We should implement a system for delivery of reports to …

May 30, 2016:

9:24 AM Ticket #888 (INCA statistics) updated by olle
(In [3981]) Refs #888. INCA statistics updated by commenting out debug …
9:24 AM Changeset [3981] by olle
Refs #888. INCA statistics updated by commenting out debug output …

May 27, 2016:

11:36 AM Ticket #888 (INCA statistics) updated by olle
(In [3980]) Refs #888. INCA statistics updated to store the results of …
11:36 AM Changeset [3980] by olle
Refs #888. INCA statistics updated to store the results of an INCA …
10:01 AM Ticket #888 (INCA statistics) updated by olle
Functional specification update: * The results of an INCA statistics …
8:54 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3979]) References #887: Release export wizard Added checks for …
8:54 AM Changeset [3979] by Nicklas Nordborg
References #887: Release export wizard Added checks for missing items …

May 26, 2016:

4:52 PM Ticket #888 (INCA statistics) updated by olle
Note: INCA servlet was updated in change set …
3:27 PM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3978]) References #887: Release export wizard Progress report …
3:27 PM Changeset [3978] by Nicklas Nordborg
References #887: Release export wizard Progress report every 10 items …
1:56 PM Ticket #890 (Remove calls to methods deprecated in BASE 3.9) updated by Nicklas Nordborg
(In [3977]) References #890: Remove calls to methods deprecated in …
1:56 PM Changeset [3977] by Nicklas Nordborg
References #890: Remove calls to methods deprecated in BASE 3.9 All …
1:03 PM Ticket #890 (Remove calls to methods deprecated in BASE 3.9) updated by Nicklas Nordborg
(In [3976]) References #890: Remove calls to methods deprecated in …
1:03 PM Changeset [3976] by Nicklas Nordborg
References #890: Remove calls to methods deprecated in BASE 3.9 …
9:58 AM Ticket #890 (Remove calls to methods deprecated in BASE 3.9) updated by Nicklas Nordborg
(In [3975]) References #890: Remove calls to methods deprecated in …
9:58 AM Changeset [3975] by Nicklas Nordborg
References #890: Remove calls to methods deprecated in BASE 3.9 …
9:17 AM Ticket #890 (Remove calls to methods deprecated in BASE 3.9) updated by Nicklas Nordborg
(In [3974]) References #890: Remove calls to methods deprecated in …
9:17 AM Changeset [3974] by Nicklas Nordborg
References #890: Remove calls to methods deprecated in BASE 3.9 …
9:15 AM Ticket #890 (Remove calls to methods deprecated in BASE 3.9) updated by Nicklas Nordborg
(In [3973]) References #890: Remove calls to methods deprecated in …
9:15 AM Changeset [3973] by Nicklas Nordborg
References #890: Remove calls to methods deprecated in BASE 3.9 Added …
9:01 AM Ticket #890 (Remove calls to methods deprecated in BASE 3.9) updated by Nicklas Nordborg
Description changed

May 25, 2016:

3:32 PM Ticket #890 (Remove calls to methods deprecated in BASE 3.9) created by Nicklas Nordborg
See http://base.thep.lu.se/ticket/2011 Reggie is full of calls to the …
10:10 AM Ticket #888 (INCA statistics) updated by olle
(In [3972]) Refs #888. INCA statistics updated by allowing the user to …
10:10 AM Changeset [3972] by olle
Refs #888. INCA statistics updated by allowing the user to select a …
10:09 AM Ticket #888 (INCA statistics) updated by olle
Functional specification update: * The user should be able to select …

May 24, 2016:

2:50 PM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3971]) References #887: Release export wizard Improved progress …
2:50 PM Changeset [3971] by Nicklas Nordborg
References #887: Release export wizard Improved progress reporting.
9:59 AM Ticket #888 (INCA statistics) updated by olle
(In [3970]) Refs #888. INCA statistics updated by adding table …
9:59 AM Changeset [3970] by olle
Refs #888. INCA statistics updated by adding table comments on how …
9:18 AM Ticket #888 (INCA statistics) updated by olle
(In [3969]) Refs #888. INCA statistics is updated by disabling date …
9:18 AM Changeset [3969] by olle
Refs #888. INCA statistics is updated by disabling date variable …

May 23, 2016:

4:45 PM Ticket #888 (INCA statistics) updated by olle
(In [3968]) Refs #888. INCA statistics is updated by allowing the user …
4:45 PM Changeset [3968] by olle
Refs #888. INCA statistics is updated by allowing the user to select …
4:43 PM Ticket #888 (INCA statistics) updated by olle
Functional specification update: * The user should be able to select …
11:50 AM Ticket #888 (INCA statistics) updated by olle
(In [3967]) Refs #888. Java servlet updated for INCA statistics in …
11:50 AM Changeset [3967] by olle
Refs #888. Java servlet updated for INCA statistics in comments and …

May 20, 2016:

1:20 PM Changeset [3966] by Nicklas Nordborg
Changes for future release IncaXml2Csv 1.1
1:19 PM Milestone INCA XML to CSV converter 1.0 completed
See INCA XML to CSV converter page for more …
1:19 PM Ticket #881 (Implement INCA XML to CSV converter) closed by Nicklas Nordborg
fixed
1:18 PM net.sf.basedb.inca edited by Nicklas Nordborg
(diff)
1:17 PM net.sf.basedb.inca edited by Nicklas Nordborg
Released IncaXml2Csv 1.0 (diff)
1:13 PM IncaXml2Csv-1.0.tar.gz attached to net.sf.basedb.inca by Nicklas Nordborg
IncaXml2Csv 1.0
1:11 PM Changeset [3965] by Nicklas Nordborg
Tagging IncaXml2Csv 1.0
1:10 PM Changeset [3964] by Nicklas Nordborg
Preparing to release IncaXml2Csv 1.0.
12:28 PM Ticket #888 (INCA statistics) updated by olle
(In [3963]) Refs #888. First (experimental) version of INCA …
12:28 PM Changeset [3963] by olle
Refs #888. First (experimental) version of INCA statistics. It allows …
11:06 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3962]) References #887: Release export wizard Progress reporter …
11:06 AM Changeset [3962] by Nicklas Nordborg
References #887: Release export wizard Progress reporter for the …
11:04 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3961]) References #887: Release export wizard The exporter now …
11:04 AM Changeset [3961] by Nicklas Nordborg
References #887: Release export wizard The exporter now uses the new …
10:58 AM Ticket #888 (INCA statistics) updated by olle
Design discussion: * As the details on entry selection and report …
10:58 AM Ticket #889 (Switch to BASE 3.9) closed by Nicklas Nordborg
fixed: (In [3960]) Fixes #889: Switch to BASE 3.9
10:58 AM Changeset [3960] by Nicklas Nordborg
Fixes #889: Switch to BASE 3.9
9:37 AM Ticket #889 (Switch to BASE 3.9) created by Nicklas Nordborg
This is required for #887 which need http://base.thep.lu.se/ticket/2004.
9:23 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3959]) References #887: Release export wizard Parent.items
9:23 AM Changeset [3959] by Nicklas Nordborg
References #887: Release export wizard Parent.items column in the …
9:00 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3958]) References #887: Release export wizard Added exporter for …
9:00 AM Changeset [3958] by Nicklas Nordborg
References #887: Release export wizard Added exporter for the …

May 19, 2016:

2:56 PM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3957]) References #887: Release export wizard Implemented a new …
2:56 PM Changeset [3957] by Nicklas Nordborg
References #887: Release export wizard Implemented a new strategy for …
11:34 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3956]) References #887: Release export wizard Changed the …
11:34 AM Changeset [3956] by Nicklas Nordborg
References #887: Release export wizard Changed the …
9:04 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3955]) References #887: Release export wizard Re-factored the …
9:04 AM Changeset [3955] by Nicklas Nordborg
References #887: Release export wizard Re-factored the code for …
8:00 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
Description changed
7:57 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3954]) References #887: Release export wizard Added …
7:57 AM Changeset [3954] by Nicklas Nordborg
References #887: Release export wizard Added GeneSymbolInfo for …

May 18, 2016:

1:12 PM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3953]) References #887: Release export wizard Re-factored the …
1:12 PM Changeset [3953] by Nicklas Nordborg
References #887: Release export wizard Re-factored the array design …
11:55 AM Ticket #888 (INCA statistics) updated by olle
(In [3952]) Refs #888. INCA servlet for INCA import updated by fixing …
11:55 AM Changeset [3952] by olle
Refs #888. INCA servlet for INCA import updated by fixing typo in …
11:33 AM Ticket #888 (INCA statistics) updated by olle
(In [3951]) Refs #888. INCA servlet for INCA import refactored …
11:33 AM Changeset [3951] by olle
Refs #888. INCA servlet for INCA import refactored regarding creation …
9:11 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
Description changed
9:08 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
I have made some tests with different strategies for loading the raw …
8:41 AM no-join-order-by-internal-id.png attached to Ticket #887 by Nicklas Nordborg
No join sort by internal reporter id
8:41 AM join-order-by-internal-id.png attached to Ticket #887 by Nicklas Nordborg
Join and sort by internal reporter id
8:40 AM join-order-by-external-id.png attached to Ticket #887 by Nicklas Nordborg
Sort by external reporter id
8:27 AM Ticket #888 (INCA statistics) updated by olle
(In [3950]) Refs #888. INCA servlet for INCA import refactored in …
8:27 AM Changeset [3950] by olle
Refs #888. INCA servlet for INCA import refactored in progress …

May 17, 2016:

4:53 PM Ticket #888 (INCA statistics) updated by olle
(In [3949]) Refs #888. INCA servlet for INCA import refactored as …
4:53 PM Changeset [3949] by olle
Refs #888. INCA servlet for INCA import refactored as preparation for …
4:20 PM Ticket #888 (INCA statistics) updated by olle
Design discussion: Much functionality needed for INCA statistics have …
2:50 PM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3948]) References #887: Release export wizard Implemented …
2:50 PM Changeset [3948] by Nicklas Nordborg
References #887: Release export wizard Implemented exporter for the …
11:49 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3947]) References #887: Release export wizard Added INCA …
11:49 AM Changeset [3947] by Nicklas Nordborg
References #887: Release export wizard Added INCA information to the …
11:43 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3946]) References #887: Release export wizard Added merged, …
11:43 AM Changeset [3946] by Nicklas Nordborg
References #887: Release export wizard Added merged, masked, aligned …
11:36 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
Description changed
11:24 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3945]) References #887: Release export wizard Added lysate, RNA …
11:24 AM Changeset [3945] by Nicklas Nordborg
References #887: Release export wizard Added lysate, RNA and library …
11:10 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3944]) References #887: Release export wizard Added specimen and …
11:10 AM Changeset [3944] by Nicklas Nordborg
References #887: Release export wizard Added specimen and stained …
10:10 AM summary_columns.txt attached to Ticket #887 by Nicklas Nordborg
Columns in the cohortSummary.txt
10:09 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
Description changed
9:40 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3943]) References #887: Release export wizard Started to …
9:40 AM Changeset [3943] by Nicklas Nordborg
References #887: Release export wizard Started to implement the …

May 16, 2016:

1:14 PM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3942]) References #887: Release export wizard Added exporter for …
1:14 PM Changeset [3942] by Nicklas Nordborg
References #887: Release export wizard Added exporter for the INCA …
11:47 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3941]) References #887: Release export wizard Added exporter for …
11:47 AM Changeset [3941] by Nicklas Nordborg
References #887: Release export wizard Added exporter for the Stained …
11:46 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
Description changed
11:04 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
Description changed
10:58 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3940]) References #887: Release export wizard Added exporters …
10:58 AM Changeset [3940] by Nicklas Nordborg
References #887: Release export wizard Added exporters for case and …
9:50 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
Description changed
9:41 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3939]) References #887: Release export wizard Added exporters …
9:41 AM Changeset [3939] by Nicklas Nordborg
References #887: Release export wizard Added exporters for lysate and …
9:18 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3938]) References #887: Release export wizard Set character set …
9:18 AM Changeset [3938] by Nicklas Nordborg
References #887: Release export wizard Set character set (UTF-8) …
9:01 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
Description changed
8:42 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3937]) References #887: Release export wizard Added exporters …
8:42 AM Changeset [3937] by Nicklas Nordborg
References #887: Release export wizard Added exporters for library …
8:29 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3936]) References #887: Release export wizard Added exporters …
8:29 AM Changeset [3936] by Nicklas Nordborg
References #887: Release export wizard Added exporters for aligned, …

May 13, 2016:

3:12 PM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3935]) References #887: Release export wizard Started with the …
3:12 PM Changeset [3935] by Nicklas Nordborg
References #887: Release export wizard Started with the cohort …
9:24 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3934]) References #887: Release export wizard Implemented …
9:24 AM Changeset [3934] by Nicklas Nordborg
References #887: Release export wizard Implemented exporter for th …
9:02 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3933]) References #887: Release export wizard Implemented …
9:02 AM Changeset [3933] by Nicklas Nordborg
References #887: Release export wizard Implemented exporter for the …
8:14 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
(In [3932]) References #887: Release export wizard Created the …
8:14 AM Changeset [3932] by Nicklas Nordborg
References #887: Release export wizard Created the exporter plug-in …

May 12, 2016:

3:42 PM Ticket #888 (INCA statistics) updated by olle
Design note: * INCA file header columns to be used for filtering and …
1:44 PM Tickets #887,​888 batch updated by Nicklas Nordborg
Milestone changed
1:43 PM Changeset [3931] by Nicklas Nordborg
Changes for future release Reggie 4.5
1:42 PM Milestone Reggie v4.4 completed
See Reggie extension page for more information.
1:41 PM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.4 (diff)
1:41 PM Ticket #883 (Add support for progress reporting to the Reggie wizard API) closed by Nicklas Nordborg
fixed
1:40 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.4 (diff)
1:34 PM reggie-4.4.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.4
1:32 PM Changeset [3930] by Nicklas Nordborg
Tagging Reggie 4.4
1:31 PM Changeset [3929] by Nicklas Nordborg
Preparing to release Reggie 4.4.
1:10 PM Ticket #525 (Import data from INCA) closed by olle
fixed: Ticket closed as first version of INCA importer has been implemented.
1:07 PM Ticket #525 (Import data from INCA) updated by olle
(In [3928]) Refs #525. INCA importer updated in preparation for …
1:07 PM Changeset [3928] by olle
Refs #525. INCA importer updated in preparation for release of first …
10:56 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
Description changed
8:05 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
Description changed
8:04 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
Description changed

May 11, 2016:

3:03 PM Ticket #525 (Import data from INCA) updated by olle
(In [3927]) Refs #525. INCA importer updated in method creating INCA …
3:03 PM Changeset [3927] by olle
Refs #525. INCA importer updated in method creating INCA import report …
2:43 PM Ticket #888 (INCA statistics) updated by olle
Traceability note: * Creation of a csv file to be used when …
2:38 PM Ticket #888 (INCA statistics) updated by olle
Status changed
Ticket accepted.
2:36 PM Ticket #888 (INCA statistics) updated by olle
Owner changed
Ticket reassigned to "olle".
2:36 PM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
Description changed
2:35 PM Ticket #888 (INCA statistics) created by olle
Statistics should be calculated from the data obtained from INCA at …
2:00 PM Ticket #525 (Import data from INCA) updated by olle
(In [3926]) Refs #525. INCA importer updated by removing or commenting …
2:00 PM Changeset [3926] by olle
Refs #525. INCA importer updated by removing or commenting out debug …
8:45 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
Status changed
8:45 AM Ticket #887 (Release export wizard) updated by Nicklas Nordborg
Description changed
Note: See TracTimeline for information about the timeline view.