Timeline



May 27, 2016:

11:36 AM Changeset [3980] by olle
Refs #888. INCA statistics updated to store the results of an INCA …
8:54 AM Changeset [3979] by Nicklas Nordborg
References #887: Release export wizard Added checks for missing items …

May 26, 2016:

3:27 PM Changeset [3978] by Nicklas Nordborg
References #887: Release export wizard Progress report every 10 items …
1:56 PM Changeset [3977] by Nicklas Nordborg
References #890: Remove calls to methods deprecated in BASE 3.9 All …
1:03 PM Changeset [3976] by Nicklas Nordborg
References #890: Remove calls to methods deprecated in BASE 3.9 …
9:58 AM Changeset [3975] by Nicklas Nordborg
References #890: Remove calls to methods deprecated in BASE 3.9 …
9:17 AM Changeset [3974] by Nicklas Nordborg
References #890: Remove calls to methods deprecated in BASE 3.9 …
9:15 AM Changeset [3973] by Nicklas Nordborg
References #890: Remove calls to methods deprecated in BASE 3.9 Added …

May 25, 2016:

3:32 PM Ticket #890 (Remove calls to methods deprecated in BASE 3.9) created by Nicklas Nordborg
See http://base.thep.lu.se/ticket/2011 Reggie is full of calls to the …
10:10 AM Changeset [3972] by olle
Refs #888. INCA statistics updated by allowing the user to select a …

May 24, 2016:

2:50 PM Changeset [3971] by Nicklas Nordborg
References #887: Release export wizard Improved progress reporting.
9:59 AM Changeset [3970] by olle
Refs #888. INCA statistics updated by adding table comments on how …
9:18 AM Changeset [3969] by olle
Refs #888. INCA statistics is updated by disabling date variable …

May 23, 2016:

4:45 PM Changeset [3968] by olle
Refs #888. INCA statistics is updated by allowing the user to select …
11:50 AM Changeset [3967] by olle
Refs #888. Java servlet updated for INCA statistics in comments and …

May 20, 2016:

1:20 PM Changeset [3966] by Nicklas Nordborg
Changes for future release IncaXml2Csv 1.1
1:19 PM Milestone INCA XML to CSV converter 1.0 completed
See INCA XML to CSV converter page for more …
1:19 PM Ticket #881 (Implement INCA XML to CSV converter) closed by Nicklas Nordborg
fixed
1:18 PM net.sf.basedb.inca edited by Nicklas Nordborg
(diff)
1:17 PM net.sf.basedb.inca edited by Nicklas Nordborg
Released IncaXml2Csv 1.0 (diff)
1:13 PM IncaXml2Csv-1.0.tar.gz attached to net.sf.basedb.inca by Nicklas Nordborg
IncaXml2Csv 1.0
1:11 PM Changeset [3965] by Nicklas Nordborg
Tagging IncaXml2Csv 1.0
1:10 PM Changeset [3964] by Nicklas Nordborg
Preparing to release IncaXml2Csv 1.0.
12:28 PM Changeset [3963] by olle
Refs #888. First (experimental) version of INCA statistics. It allows …
11:06 AM Changeset [3962] by Nicklas Nordborg
References #887: Release export wizard Progress reporter for the …
11:04 AM Changeset [3961] by Nicklas Nordborg
References #887: Release export wizard The exporter now uses the new …
10:58 AM Ticket #889 (Switch to BASE 3.9) closed by Nicklas Nordborg
fixed: (In [3960]) Fixes #889: Switch to BASE 3.9
10:58 AM Changeset [3960] by Nicklas Nordborg
Fixes #889: Switch to BASE 3.9
9:37 AM Ticket #889 (Switch to BASE 3.9) created by Nicklas Nordborg
This is required for #887 which need http://base.thep.lu.se/ticket/2004.
9:23 AM Changeset [3959] by Nicklas Nordborg
References #887: Release export wizard Parent.items column in the …
9:00 AM Changeset [3958] by Nicklas Nordborg
References #887: Release export wizard Added exporter for the …

May 19, 2016:

2:56 PM Changeset [3957] by Nicklas Nordborg
References #887: Release export wizard Implemented a new strategy for …
11:34 AM Changeset [3956] by Nicklas Nordborg
References #887: Release export wizard Changed the …
9:04 AM Changeset [3955] by Nicklas Nordborg
References #887: Release export wizard Re-factored the code for …
7:57 AM Changeset [3954] by Nicklas Nordborg
References #887: Release export wizard Added GeneSymbolInfo for …

May 18, 2016:

1:12 PM Changeset [3953] by Nicklas Nordborg
References #887: Release export wizard Re-factored the array design …
11:55 AM Changeset [3952] by olle
Refs #888. INCA servlet for INCA import updated by fixing typo in …
11:33 AM Changeset [3951] by olle
Refs #888. INCA servlet for INCA import refactored regarding creation …
8:27 AM Changeset [3950] by olle
Refs #888. INCA servlet for INCA import refactored in progress …

May 17, 2016:

4:53 PM Changeset [3949] by olle
Refs #888. INCA servlet for INCA import refactored as preparation for …
2:50 PM Changeset [3948] by Nicklas Nordborg
References #887: Release export wizard Implemented exporter for the …
11:49 AM Changeset [3947] by Nicklas Nordborg
References #887: Release export wizard Added INCA information to the …
11:43 AM Changeset [3946] by Nicklas Nordborg
References #887: Release export wizard Added merged, masked, aligned …
11:24 AM Changeset [3945] by Nicklas Nordborg
References #887: Release export wizard Added lysate, RNA and library …
11:10 AM Changeset [3944] by Nicklas Nordborg
References #887: Release export wizard Added specimen and stained …
9:40 AM Changeset [3943] by Nicklas Nordborg
References #887: Release export wizard Started to implement the …

May 16, 2016:

1:14 PM Changeset [3942] by Nicklas Nordborg
References #887: Release export wizard Added exporter for the INCA …
11:47 AM Changeset [3941] by Nicklas Nordborg
References #887: Release export wizard Added exporter for the Stained …
10:58 AM Changeset [3940] by Nicklas Nordborg
References #887: Release export wizard Added exporters for case and …
9:41 AM Changeset [3939] by Nicklas Nordborg
References #887: Release export wizard Added exporters for lysate and …
9:18 AM Changeset [3938] by Nicklas Nordborg
References #887: Release export wizard Set character set (UTF-8) …
8:42 AM Changeset [3937] by Nicklas Nordborg
References #887: Release export wizard Added exporters for library …
8:29 AM Changeset [3936] by Nicklas Nordborg
References #887: Release export wizard Added exporters for aligned, …

May 13, 2016:

3:12 PM Changeset [3935] by Nicklas Nordborg
References #887: Release export wizard Started with the cohort …
9:24 AM Changeset [3934] by Nicklas Nordborg
References #887: Release export wizard Implemented exporter for th …
9:02 AM Changeset [3933] by Nicklas Nordborg
References #887: Release export wizard Implemented exporter for the …
8:14 AM Changeset [3932] by Nicklas Nordborg
References #887: Release export wizard Created the exporter plug-in …

May 12, 2016:

1:43 PM Changeset [3931] by Nicklas Nordborg
Changes for future release Reggie 4.5
1:42 PM Milestone Reggie v4.4 completed
See Reggie extension page for more information.
1:41 PM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.4 (diff)
1:41 PM Ticket #883 (Add support for progress reporting to the Reggie wizard API) closed by Nicklas Nordborg
fixed
1:40 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.4 (diff)
1:34 PM reggie-4.4.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.4
1:32 PM Changeset [3930] by Nicklas Nordborg
Tagging Reggie 4.4
1:31 PM Changeset [3929] by Nicklas Nordborg
Preparing to release Reggie 4.4.
1:10 PM Ticket #525 (Import data from INCA) closed by olle
fixed: Ticket closed as first version of INCA importer has been implemented.
1:07 PM Changeset [3928] by olle
Refs #525. INCA importer updated in preparation for release of first …

May 11, 2016:

3:03 PM Changeset [3927] by olle
Refs #525. INCA importer updated in method creating INCA import report …
2:35 PM Ticket #888 (INCA statistics) created by olle
Statistics should be calculated from the data obtained from INCA at …
2:00 PM Changeset [3926] by olle
Refs #525. INCA importer updated by removing or commenting out debug …

May 10, 2016:

4:59 PM Changeset [3925] by olle
Refs #525. INCA importer updated to only use a single *.csv file for …
12:03 PM Changeset [3924] by olle
Refs #525. INCA importer updated in JSP file to only allow a single …

May 9, 2016:

9:31 AM Ticket #887 (Release export wizard) created by Nicklas Nordborg
Implement a wizard for creating all files that should be included in a …

May 4, 2016:

2:41 PM Changeset [3923] by olle
Refs #525. INCA importer updated to no longer replace tabs with spaces …
8:48 AM Changeset [3922] by olle
Refs #525. INCA importer updated in progress reporter to report …

May 3, 2016:

4:57 PM Changeset [3921] by olle
Refs #525. INCA importer updated in progress reporter to report …
1:58 PM Changeset [3920] by olle
Refs #525. INCA importer updated to use progress reporter: 1. JSP …
1:57 PM Ticket #886 (Add thousand separator to counter on Reggie start page) closed by Nicklas Nordborg
fixed: (In [3919]) Fixes #886: Add thousand separator to counter on Reggie …
1:57 PM Changeset [3919] by Nicklas Nordborg
Fixes #886: Add thousand separator to counter on Reggie start page
1:57 PM Ticket #886 (Add thousand separator to counter on Reggie start page) created by Nicklas Nordborg
It looks better and is more readable when the numbers get large.
9:36 AM Ticket #885 (The ProjectArchive permission checker should use smaller batches with ...) closed by Nicklas Nordborg
fixed: (In [3918]) Fixes #885: The ProjectArchive? permission checker should …
9:36 AM Changeset [3918] by Nicklas Nordborg
Fixes #885: The ProjectArchive? permission checker should use smaller …
8:13 AM Ticket #885 (The ProjectArchive permission checker should use smaller batches with ...) created by Nicklas Nordborg
The current implementation will search for all files with incorrect …

May 2, 2016:

4:33 PM Changeset [3917] by olle
Refs #525. INCA importer updated by using a sample query to obtain …
1:41 PM Changeset [3916] by Nicklas Nordborg
References #883: Add support for progress reporting to the Reggie …
1:27 PM Changeset [3915] by olle
Refs #525. INCA importer updated by refactoring database mapping and …
1:09 PM Changeset [3914] by Nicklas Nordborg
References #883: Add support for progress reporting to the Reggie …
9:56 AM Ticket #884 (Check timeouts for SSH commands) closed by Nicklas Nordborg
fixed: (In [3913]) Fixes #884: Check timeouts for SSH commands Should be …
9:56 AM Changeset [3913] by Nicklas Nordborg
Fixes #884: Check timeouts for SSH commands Should be better now. 5 …
9:22 AM Changeset [3912] by Nicklas Nordborg
References #883: Add support for progress reporting to the Reggie …
9:20 AM Ticket #884 (Check timeouts for SSH commands) created by Nicklas Nordborg
I think we need to check how SSH commands are handled with respect to …
8:51 AM Changeset [3911] by Nicklas Nordborg
References #883: Add support for progress reporting to the Reggie …

Apr 29, 2016:

4:52 PM Changeset [3910] by olle
Refs #525. INCA importer updated by refactoring internal laterality …
3:47 PM Changeset [3909] by olle
Refs #525. INCA importer updated by removing unused or redundant …
2:33 PM Changeset [3908] by olle
Refs #525. INCA importer updated by refactoring collection of …
2:24 PM Changeset [3907] by Nicklas Nordborg
References #883: Add support for progress reporting to the Reggie …
2:22 PM Changeset [3906] by Nicklas Nordborg
References #883: Add support for progress reporting to the Reggie …
1:20 PM Changeset [3905] by Nicklas Nordborg
References #883: Add support for progress reporting to the Reggie …
12:53 PM Changeset [3904] by Nicklas Nordborg
References #883: Add support for progress reporting to the Reggie …
12:20 PM Changeset [3903] by olle
Refs #525. INCA importer updated by refactoring finding key column …
11:57 AM Ticket #883 (Add support for progress reporting to the Reggie wizard API) created by Nicklas Nordborg
There are a few Reggie wizards that takes some time to complete. It …
11:49 AM Changeset [3902] by olle
Refs #525. INCA importer updated by removing unused variable …
11:20 AM Changeset [3901] by olle
Refs #525. INCA importer updated by refactoring mapping of personal …
10:04 AM Changeset [3900] by olle
Refs #525. INCA importer updated by refactoring file upload: 1. Java …
8:10 AM Ticket #882 (It is not possible for a user with PatientCurator role to use the ...) closed by Nicklas Nordborg
fixed: (In [3899]) Fixes #882: It is not possible for a user with …
8:10 AM Changeset [3899] by Nicklas Nordborg
Fixes #882: It is not possible for a user with PatientCurator? role to …
8:06 AM Ticket #882 (It is not possible for a user with PatientCurator role to use the ...) created by Nicklas Nordborg
This function uses the same code as the "Report wizards" in the …

Apr 28, 2016:

3:39 PM Changeset [3898] by Nicklas Nordborg
References #881: Implement INCA XML to CSV converter Changes to make …
3:37 PM Changeset [3897] by Nicklas Nordborg
References #881: Implement INCA XML to CSV converter Changes to make …
3:00 PM Changeset [3896] by Nicklas Nordborg
References #881: Implement INCA XML to CSV converter Updated README …
2:59 PM net.sf.basedb.inca edited by Nicklas Nordborg
Added link to README (diff)
2:57 PM Changeset [3895] by olle
Refs #525. INCA importer updated to accept alternative headers for …
2:25 PM Changeset [3894] by Nicklas Nordborg
References #881: Implement INCA XML to CSV converter Arrgggh... …
2:24 PM Changeset [3893] by Nicklas Nordborg
References #881: Implement INCA XML to CSV converter Ignore the new …
2:19 PM Changeset [3892] by Nicklas Nordborg
References #881: Implement INCA XML to CSV converter Renamed JAR/TAR …
2:16 PM Changeset [3891] by Nicklas Nordborg
References #881: Implement INCA XML to CSV converter Personal number …
1:16 PM Changeset [3890] by Nicklas Nordborg
References #881: Implement INCA XML to CSV converter Added "Save as" …
11:22 AM Changeset [3889] by olle
Refs #525. INCA importer updated to use an object of the BASE …
10:03 AM Changeset [3888] by olle
Refs #525. INCA importer updated to accept alternative headers …
8:57 AM Changeset [3887] by Nicklas Nordborg
References #881: Implement INCA XML to CSV converter Added a writer …
8:28 AM Changeset [3886] by olle
Refs #525. INCA importer updated in the bad value check for INCA …
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