Timeline
Mar 23, 2016:
- 2:56 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3815]) References #861: YellowLabel tracking wizard Load sites …
- 2:56 PM Changeset [3815] by
- References #861: YellowLabel tracking wizard Load sites and …
- 2:36 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3814]) References #861: YellowLabel tracking wizard When …
- 2:36 PM Changeset [3814] by
- References #861: YellowLabel tracking wizard When filtering on the …
- 9:08 AM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3813]) References #861: YellowLabel tracking wizard The …
- 9:08 AM Changeset [3813] by
- References #861: YellowLabel tracking wizard The "PilotReportExists" …
- 9:05 AM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3812]) References #861: YellowLabel tracking wizard Added column …
- 9:05 AM Changeset [3812] by
- References #861: YellowLabel tracking wizard Added column for …
- 8:53 AM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3811]) References #861: YellowLabel tracking wizard Added linked …
- 8:53 AM Changeset [3811] by
- References #861: YellowLabel tracking wizard Added linked icons to …
- 8:05 AM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3810]) References #861: YellowLabel tracking wizard The "Pilot …
- 8:05 AM Changeset [3810] by
- References #861: YellowLabel tracking wizard The "Pilot report" …
Mar 22, 2016:
- 4:03 PM Ticket #525 (Import data from INCA) updated by
-
Note on INCA annotations:
* INCA file columns "
A030PrepNr" and … - 3:27 PM Ticket #874 (<reference-gidx> is incorrect in the default reggie-config.xml file) created by
-
This should be changed to:
hg38/hg38.analysisSet/hg38.analysisSet.fa - 2:33 PM Changeset [3809] by
- Merge Reggie 4.2.1 to the trunk.
- 2:29 PM Milestone Reggie v4.2.1 completed
- Bug fixes for Reggie 4.2. Revision Log: …
- 2:29 PM PluginDownload edited by
- Released Reggie 4.2.1 (diff)
- 2:28 PM net.sf.basedb.reggie edited by
- Released Reggie 4.2.1 (diff)
- 2:25 PM Changeset [3808] by
- Tagging Reggie 4.2.1
- 2:25 PM Changeset [3807] by
- Preparing to release Reggie 4.2.1
- 2:19 PM Ticket #873 (Target volume for NeoPrep should be changed from 12.5 to 15) closed by
- fixed
- 2:11 PM Ticket #873 (Target volume for NeoPrep should be changed from 12.5 to 15) updated by
- (In [3806]) References #873: Target volume for NeoPrep should be …
- 2:11 PM Changeset [3806] by
- References #873: Target volume for NeoPrep should be changed from 12.5 …
- 2:02 PM Ticket #873 (Target volume for NeoPrep should be changed from 12.5 to 15) updated by
-
Description changed
- 1:58 PM Ticket #873 (Target volume for NeoPrep should be changed from 12.5 to 15) updated by
- (In [3805]) References #873: Target volume for NeoPrep should be …
- 1:58 PM Changeset [3805] by
- References #873: Target volume for NeoPrep should be changed from 12.5 …
- 1:28 PM Ticket #873 (Target volume for NeoPrep should be changed from 12.5 to 15) created by
- See also #858. Turned out that 12.5µl was not practical since it was …
- 9:55 AM Ticket #634 (Retraction wizard) updated by
-
Milestone changed
- 9:55 AM Ticket #866 (Implement the "Start page" extension) updated by
-
Milestone changed
- 9:55 AM Ticket #866 (Implement the "Start page" extension) closed by
- duplicate: Duplicated by #872.
- 8:51 AM Ticket #868 (Update SSH library) updated by
- (In [3804]) References #868: Update SSH library Use a singleton …
- 8:51 AM Changeset [3804] by
-
References #868: Update SSH library
Use a singleton
Configinstance … - 8:37 AM Ticket #867 (Update SSH library) updated by
- (In [3803]) References #867: Update SSH library Use a singleton …
- 8:37 AM Changeset [3803] by
-
References #867: Update SSH library
Use a singleton
Configinstance …
Mar 21, 2016:
- 2:52 PM Ticket #864 (Implement a service that check and update file permission in ProjectArchive) updated by
- (In [3802]) References #864: Implement a service that check and update …
- 2:52 PM Changeset [3802] by
- References #864: Implement a service that check and update file …
- 12:11 PM Ticket #525 (Import data from INCA) updated by
-
(In [3801]) Refs #525. Java servlet class
IncaServletrefactored to … - 12:11 PM Changeset [3801] by
-
Refs #525. Java servlet class
IncaServletrefactored to make code …
Mar 18, 2016:
- 3:04 PM Ticket #864 (Implement a service that check and update file permission in ProjectArchive) updated by
-
Status, Milestone changed
- 2:27 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3800]) References #861: YellowLabel tracking wizard Gray …
- 2:27 PM Changeset [3800] by
- References #861: YellowLabel tracking wizard Gray background for …
- 1:16 PM Ticket #872 (Register Reggie as a start page) created by
- BASE 3.8 provides a new extension point for setting the start page …
- 1:13 PM Ticket #867 (Update SSH library) updated by
-
Status changed
- 1:08 PM Ticket #871 (NullPointerException when selecting a software item in the gene/pilot ...) closed by
- fixed: (In [3799]) Fixes #871: NullPointerException when selecting a software …
- 1:08 PM Changeset [3799] by
- Fixes #871: NullPointerException when selecting a software item in the …
- 1:07 PM Ticket #871 (NullPointerException when selecting a software item in the gene/pilot ...) updated by
-
Status, Owner, Component changed
- 1:05 PM Ticket #871 (NullPointerException when selecting a software item in the gene/pilot ...) created by
- When running the Gene and Pilot report wizard it is possible to select …
- 12:05 PM Tickets #869,870 batch updated by
- (In [3798]) References #870 and #869. Updated README.
- 12:05 PM Changeset [3798] by
- References #870 and #869. Updated README.
- 12:04 PM Ticket #869 (Switch to Java 8) closed by
- fixed
- 12:03 PM Ticket #870 (Switch to BASE 3.7) closed by
- fixed: (In [3797]) Fixes #870: Switch to BASE 3.7 Noted that the FTP …
- 12:03 PM Changeset [3797] by
- Fixes #870: Switch to BASE 3.7 Noted that the FTP connection manager …
- 11:44 AM Ticket #870 (Switch to BASE 3.7) created by
- The usual procedure is to always require the current BASE version.
- 11:43 AM Ticket #869 (Switch to Java 8) updated by
- (In [3795]) Fixes #869: Switch to Java 8
- 11:42 AM Ticket #868 (Update SSH library) closed by
- fixed: (In [3796]) Fixes #868: Update SSH library
- 11:42 AM Changeset [3796] by
- Fixes #868: Update SSH library
- 11:40 AM Ticket #844 (Switch to Java 8) updated by
- Should be #869. (In [3795]) Fixes #844: Switch to Java 8
- 11:40 AM Changeset [3795] by
- Fixes #844: Switch to Java 8
- 11:30 AM Ticket #869 (Switch to Java 8) created by
- Java 8 is recommended since BASE 3.6. See for example #783.
- 11:24 AM Ticket #868 (Update SSH library) created by
- See #867.
- 11:24 AM Ticket #867 (Update SSH library) updated by
- (In [3794]) References #867: Update SSH library Changed to SSHJ …
- 11:24 AM Changeset [3794] by
- References #867: Update SSH library Changed to SSHJ 0.15.0. New …
- 11:15 AM Ticket #867 (Update SSH library) created by
- The SSH library we use for making SSH connections to other hosts seems …
- 10:49 AM Ticket #863 (Secondary analysis scripts should set permissions on created files in ...) updated by
- (In [3793]) References #863: Secondary analysis scripts should set …
- 10:49 AM Changeset [3793] by
- References #863: Secondary analysis scripts should set permissions on …
- 9:07 AM Ticket #863 (Secondary analysis scripts should set permissions on created files in ...) updated by
- (In [3792]) References #863: Secondary analysis scripts should set …
- 9:07 AM Changeset [3792] by
- References #863: Secondary analysis scripts should set permissions on …
Mar 17, 2016:
- 2:49 PM Ticket #863 (Secondary analysis scripts should set permissions on created files in ...) updated by
-
Status, Milestone changed
- 2:42 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3791]) References #861: YellowLabel tracking wizard The "Create …
- 2:42 PM Changeset [3791] by
- References #861: YellowLabel tracking wizard The "Create Pilot report …
- 1:47 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3790]) References #861: YellowLabel tracking wizard Moved yellow …
- 1:47 PM Changeset [3790] by
- References #861: YellowLabel tracking wizard Moved yellow label files …
- 1:37 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3789]) References #861: YellowLabel tracking wizard Added …
- 1:37 PM Changeset [3789] by
- References #861: YellowLabel tracking wizard Added "Create Pilot …
- 1:34 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3788]) References #861: YellowLabel tracking wizard Moved code …
- 1:34 PM Changeset [3788] by
- References #861: YellowLabel tracking wizard Moved code from the …
- 12:42 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3787]) References #861: YellowLabel tracking wizard Added "Mark …
- 12:42 PM Changeset [3787] by
- References #861: YellowLabel tracking wizard Added "Mark as …
- 11:08 AM Ticket #525 (Import data from INCA) updated by
- (In [3786]) Refs #525. First version of the INCA data import. It is …
- 11:08 AM Changeset [3786] by
- Refs #525. First version of the INCA data import. It is based on the …
Mar 16, 2016:
- 4:55 PM Ticket #525 (Import data from INCA) updated by
- Functional specification update: * First version of the INCA data …
- 3:42 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3785]) References #861: YellowLabel tracking wizard Fixes …
- 3:42 PM Changeset [3785] by
- References #861: YellowLabel tracking wizard Fixes filtering problems …
- 3:33 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3784]) References #861: YellowLabel tracking wizard Added …
- 3:33 PM Changeset [3784] by
-
References #861: YellowLabel tracking wizard
Added
CompletedDate… - 1:20 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3783]) References #861: YellowLabel tracking wizard Adding …
- 1:20 PM Changeset [3783] by
- References #861: YellowLabel tracking wizard Adding counter for …
- 12:54 PM Ticket #866 (Implement the "Start page" extension) created by
- Reggie should add itself as a "Start page". See …
- 11:01 AM Ticket #864 (Implement a service that check and update file permission in ProjectArchive) updated by
- Executing the following command […] will output a list with file …
- 9:43 AM Ticket #863 (Secondary analysis scripts should set permissions on created files in ...) updated by
-
Description changed
- 8:15 AM Ticket #865 (Stray files wizard) updated by
-
Description changed
- 8:14 AM Ticket #865 (Stray files wizard) created by
- The files in the project archive may not reflect what is registered in …
- 8:02 AM Ticket #863 (Secondary analysis scripts should set permissions on created files in ...) updated by
-
Description changed
- 8:02 AM Ticket #864 (Implement a service that check and update file permission in ProjectArchive) created by
- This is related to #863. The secondary analysis scripts will not give …
- 7:56 AM Ticket #863 (Secondary analysis scripts should set permissions on created files in ...) created by
- This is related to #864. Files generated on the project archive file …
Mar 11, 2016:
- 9:20 AM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3782]) References #861: YellowLabel tracking wizard Added …
- 9:20 AM Changeset [3782] by
- References #861: YellowLabel tracking wizard Added columns for Raw …
Mar 10, 2016:
- 3:53 PM Ticket #855 (Retraction follow-up and destruction wizards should make it easier to ...) updated by
-
Summary changed
- 3:40 PM Changeset [3781] by
- Updating trunk version to 4.3-dev. It should have been done as part of …
- 3:37 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3780]) References #861: YellowLabel tracking wizard Added …
- 3:37 PM Changeset [3780] by
- References #861: YellowLabel tracking wizard Added columns for RNA …
- 2:32 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3779]) References #861: YellowLabel tracking wizard Added the …
- 2:32 PM Changeset [3779] by
- References #861: YellowLabel tracking wizard Added the main list page …
- 1:32 PM Ticket #861 (YellowLabel tracking wizard) updated by
-
Description changed
- 11:25 AM Ticket #861 (YellowLabel tracking wizard) updated by
-
Status, Milestone changed
- 8:46 AM Ticket #862 (Import frozen tissue date wizard should have PatientCurator role) closed by
- fixed: (In [3778]) Fixes #862: Import frozen tissue date wizard should have …
- 8:46 AM Changeset [3778] by
- Fixes #862: Import frozen tissue date wizard should have …
- 8:45 AM Ticket #862 (Import frozen tissue date wizard should have PatientCurator role) updated by
-
Status, Type changed
Seems like there was a mismatch between the web interface and the … - 8:42 AM Ticket #862 (Import frozen tissue date wizard should have PatientCurator role) created by
- The Import frozen tissue date wizard (see #808) is currently enabled …
Mar 9, 2016:
- 11:11 AM Ticket #771 (Yellow label highlighting a representative specimen) updated by
-
Description changed
- 11:11 AM Ticket #861 (YellowLabel tracking wizard) created by
- See #771. Implement a new wizard for tracking and summarize the …
- 9:16 AM Ticket #860 (NeoPrep need other barcode variants) closed by
- fixed: (In [3777]) Fixes #860: NeoPrep need other barcode variants
- 9:16 AM Changeset [3777] by
- Fixes #860: NeoPrep need other barcode variants
- 8:24 AM Ticket #860 (NeoPrep need other barcode variants) updated by
-
Status, Milestone changed
- 8:23 AM Changeset [3776] by
- Creating bugfix branch for Reggie 4.2
- 8:21 AM Ticket #860 (NeoPrep need other barcode variants) created by
- Turned out that the NeoPrep kits ships in three different sets: i. …
Mar 7, 2016:
- 8:36 AM net.sf.basedb.reggie/HistoryOfReggie edited by
- Added Reggie 4.2 screenshot (diff)
- 8:28 AM Milestone Reggie v4.2 completed
- See Reggie extension page for more information.
- 8:28 AM PluginDownload edited by
- Released Reggie 4.2 (diff)
- 8:25 AM net.sf.basedb.reggie edited by
- Released Reggie 4.2 (diff)
- 8:23 AM Changeset [3775] by
- Tagging Reggie 4.2
- 8:22 AM Changeset [3774] by
- Preparing to release Reggie 4.2
- 8:13 AM Ticket #770 (Retraction wizard - Step 3: Destruction) closed by
- fixed
- 8:12 AM Ticket #858 (Target volume for NeoPrep should be changed from 45 to 12.5) closed by
- fixed: (In [3773]) Fixes #858: Target volume for NeoPrep should be changed …
- 8:12 AM Changeset [3773] by
- Fixes #858: Target volume for NeoPrep should be changed from 45 to 12.5
Mar 4, 2016:
- 3:09 PM Ticket #859 (ProjectArchive should be shared with USE permission to the project) closed by
- fixed: (In [3772]) Fixes #859: ProjectArchive should be shared with USE …
- 3:09 PM Changeset [3772] by
- Fixes #859: ProjectArchive should be shared with USE permission to the …
- 2:13 PM Ticket #859 (ProjectArchive should be shared with USE permission to the project) created by
- It is currently shared with READ permission only and USE permission …
- 2:10 PM Ticket #858 (Target volume for NeoPrep should be changed from 45 to 12.5) created by
Mar 2, 2016:
- 9:17 AM Ticket #525 (Import data from INCA) updated by
- Design discussion: * It was decided to perform the INCA data import …
Feb 26, 2016:
- 3:02 PM Ticket #771 (Yellow label highlighting a representative specimen) updated by
- (In [3771]) References #771: Yellow label highlighting a …
- 3:02 PM Changeset [3771] by
- References #771: Yellow label highlighting a representative specimen …
- 2:02 PM Ticket #771 (Yellow label highlighting a representative specimen) updated by
- (In [3770]) References #771: Yellow label highlighting a …
- 2:02 PM Changeset [3770] by
- References #771: Yellow label highlighting a representative specimen …
Feb 24, 2016:
- 9:30 AM Ticket #847 (Highlight YellowLabel specimen in library preparation wizards) closed by
- fixed
- 9:29 AM Ticket #855 (Retraction follow-up and destruction wizards should make it easier to ...) closed by
- fixed
- 9:26 AM Ticket #770 (Retraction wizard - Step 3: Destruction) updated by
- (In [3769]) References #770: Retraction wizard - Step 3: Destruction …
- 9:26 AM Changeset [3769] by
- References #770: Retraction wizard - Step 3: Destruction Setting …
- 9:18 AM Ticket #856 (Highlight YellowLabel specimen in secondary analysis wizards) closed by
- fixed: (In [3768]) Fixes #856: Highlight YellowLabel specimen in secondary …
- 9:18 AM Changeset [3768] by
- Fixes #856: Highlight YellowLabel specimen in secondary analysis …
Feb 23, 2016:
- 2:16 PM Ticket #857 (Highlight YellowLabel specimen in Flagged RNA wizard) closed by
- fixed: (In [3767]) Fixes #857: Highlight YellowLabel specimen in Flagged RNA …
- 2:16 PM Changeset [3767] by
- Fixes #857: Highlight YellowLabel specimen in Flagged RNA wizard
- 1:33 PM Ticket #771 (Yellow label highlighting a representative specimen) updated by
-
Description changed
- 1:33 PM Ticket #857 (Highlight YellowLabel specimen in Flagged RNA wizard) created by
- See #771. RNA derived from YellowLabel specimen should just be …
- 1:30 PM Ticket #856 (Highlight YellowLabel specimen in secondary analysis wizards) created by
- See #771. The wizards in the secondary analysis should just highlight …
- 1:23 PM Ticket #855 (Retraction follow-up and destruction wizards should make it easier to ...) updated by
- (In [3766]) References #855: Retraction fullow-up and destruction …
- 1:23 PM Changeset [3766] by
- References #855: Retraction fullow-up and destruction wizards should …
- 1:22 PM Ticket #770 (Retraction wizard - Step 3: Destruction) updated by
-
Milestone changed
- 1:15 PM Ticket #851 (Retraction wizard - Step 2: Follow up should allow dates to be set as N/A) updated by
-
Milestone changed
- 11:45 AM Ticket #855 (Retraction follow-up and destruction wizards should make it easier to ...) updated by
- (In [3765]) References #855: Retraction fullow-up and destruction …
- 11:45 AM Changeset [3765] by
- References #855: Retraction fullow-up and destruction wizards should …
- 11:05 AM Ticket #855 (Retraction follow-up and destruction wizards should make it easier to ...) updated by
-
Status changed
Feb 22, 2016:
- 12:50 PM Ticket #847 (Highlight YellowLabel specimen in library preparation wizards) updated by
- (In [3764]) References #847: Highlight YellowLabel specimen in library …
- 12:50 PM Changeset [3764] by
- References #847: Highlight YellowLabel specimen in library preparation …
- 8:34 AM Ticket #853 (RNA marked for ReProcess should be auto-selected even if no RNAQC ...) closed by
- fixed: (In [3763]) Fixes #853: RNA marked for ReProcess should be …
- 8:34 AM Changeset [3763] by
- Fixes #853: RNA marked for ReProcess should be auto-selected even if …
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