Timeline



Nov 13, 2015:

3:03 PM Changeset [3601] by Nicklas Nordborg
References #785: Separate project archive folder for external samples …
2:00 PM net.sf.basedb.reggie/notes40 created by Nicklas Nordborg
First version of update notes for Reggie 4.0 (moving external files to …
1:13 PM Changeset [3600] by Nicklas Nordborg
References #785: Separate project archive folder for external samples …

Nov 12, 2015:

2:46 PM Ticket #830 (Link software items to gene and pilot report pdf files) created by Nicklas Nordborg
When starting the gene report and pilot report wizards it should be …
2:41 PM Changeset [3599] by olle
Refs #801. Refs #816. Updates due to version number change to …
2:34 PM Changeset [3598] by olle
Refs #801. Refs #816. Updates due to version number change to …
2:29 PM Ticket #829 (Display RNA box position in the lab protocol from "Create aliquots on ...) created by Nicklas Nordborg
Similar to #817.
2:12 PM Changeset [3597] by olle
Refs #816. Wizard "Create label file for a number of new cases" in …
1:45 PM Changeset [3596] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" updated in …
10:40 AM Ticket #828 (PoolSchema=1by16offset is not installed by the installation wizard) closed by Nicklas Nordborg
fixed: (In [3595]) Fixes #828: PoolSchema?=1by16offset is not installed by the …
10:40 AM Changeset [3595] by Nicklas Nordborg
Fixes #828: PoolSchema?=1by16offset is not installed by the …
9:57 AM Changeset [3594] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" updated in …
9:44 AM Changeset [3593] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" updated in …
9:02 AM Changeset [3592] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" updated …

Nov 11, 2015:

4:47 PM Changeset [3591] by olle
Refs #816. Wizard "Lab tracking protocol for FFPE extraction" in …
2:49 PM Ticket #828 (PoolSchema=1by16offset is not installed by the installation wizard) created by Nicklas Nordborg
Trying to use the new Pool schema '1by16offset' that was implemented …
1:47 PM Changeset [3590] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" updated …
12:09 AM Changeset [3589] by Jari Häkkinen
Restoring svn:eol-style to LF

Nov 10, 2015:

2:42 PM Changeset [3588] by Nicklas Nordborg
Updated Reggie version to 4.0-dev
2:01 PM Ticket #827 (Implement support for YellowLabel in the specimen tube registration wizard) created by Nicklas Nordborg
This is part 1 of #771. The specimen tube registration wizard should …
1:50 PM Ticket #826 (Auto-create mRNA plate wizard) created by Nicklas Nordborg
While the current create mRNA plate wizard is powerful it is also …
1:31 PM Ticket #825 (Optimize library preparation and sequencing wizards for NextSeq) created by Nicklas Nordborg
Several wizards in the library preparation and sequencing sections was …
8:25 AM Changeset [3587] by olle
Refs #816. Bug fixed in default cell text in extraction protocol table …

Nov 9, 2015:

5:28 PM Changeset [3586] by Jari Häkkinen
Fixing svn:eol-style
5:24 PM Changeset [3585] by Jari Häkkinen
Updating post-alingment script to latest released version. The script …
3:42 PM Changeset [3584] by Jari Häkkinen
Fixing svndigest&svncopyright properties
3:38 PM Changeset [3583] by Jari Häkkinen
Fixing Id keyword
1:21 PM Ticket #824 (fix_tophat_unmapped_reads.py has been renamed to tophat-recondition.py) created by Nicklas Nordborg
The fix_tophat_unmapped_reads.py script is used in the alignment …
1:18 PM Ticket #823 (Do not include items with only Read permission in selection lists) created by Nicklas Nordborg
In several Reggie wizards it is possible to select protocol, hardware …

Nov 6, 2015:

2:13 PM Changeset [3582] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" updated in …
11:26 AM Changeset [3581] by Nicklas Nordborg
Merge changes in Reggie 3.7.1 to the trunk.
11:21 AM Milestone Reggie v3.7.1 completed
Bug fixes for Reggie 3.7. Revision Log: …
11:20 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 3.7.1 (diff)
11:20 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 3.7.1 (diff)
11:18 AM reggie-3.7.1.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 3.7.1
11:17 AM Changeset [3580] by Nicklas Nordborg
Tagging Reggie 3.7.1
11:16 AM Changeset [3579] by Nicklas Nordborg
Preparing to release Reggie 3.7.1
11:14 AM Ticket #822 (Fix character encoding problems with R scripts) closed by Nicklas Nordborg
fixed: (In [3578]) Fixes #822: Fix character encoding problems with R scripts …
11:14 AM Changeset [3578] by Nicklas Nordborg
Fixes #822: Fix character encoding problems with R scripts Calling …
9:41 AM Ticket #822 (Fix character encoding problems with R scripts) created by Nicklas Nordborg
When testing the pilot report R script on the production server it …
9:30 AM Changeset [3577] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" in section …
8:10 AM Changeset [3576] by Nicklas Nordborg
Creating bugfix branch for Reggie 3.7

Nov 5, 2015:

1:58 PM Changeset [3575] by olle
Refs #816. Wizard "Create label file for a number of new cases" in …
9:48 AM Changeset [3574] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" updated …
8:52 AM Changeset [3573] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" in section …

Nov 2, 2015:

8:32 AM Changeset [3572] by Nicklas Nordborg
References #783: Switch to Java 8 Getting rid of some warnings …

Oct 30, 2015:

8:38 AM Ticket #782 (Fix compilation error when compiling against BASE 3.6) closed by Nicklas Nordborg
fixed: (In [3571]) Fixes #782: Fix compilation error when compiling against …
8:38 AM Changeset [3571] by Nicklas Nordborg
Fixes #782: Fix compilation error when compiling against BASE 3.6 …
7:20 AM Ticket #783 (Switch to Java 8) closed by Nicklas Nordborg
fixed: (In [3570]) Fixes #783: Switch to Java 8
7:20 AM Changeset [3570] by Nicklas Nordborg
Fixes #783: Switch to Java 8

Oct 29, 2015:

11:41 AM net.sf.basedb.reggie/HistoryOfReggie edited by Nicklas Nordborg
(diff)
11:40 AM reggie-3.7.png attached to net.sf.basedb.reggie/HistoryOfReggie by Nicklas Nordborg
Reggie 3.7
11:33 AM Changeset [3569] by Nicklas Nordborg
Preparing for future release Reggie 3.8
11:32 AM Milestone Reggie v3.7 completed
See Reggie extension page for more information.
11:32 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 3.7 (diff)
11:31 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 3.7 (diff)
11:29 AM reggie-3.7.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 3.7
11:27 AM Changeset [3568] by Nicklas Nordborg
Tagging Reggie 3.7
11:25 AM Changeset [3567] by Nicklas Nordborg
Preparing to release Reggie 3.7
11:03 AM Ticket #810 (Gene report combiner plug-in should be able to combine to a zip file) closed by Nicklas Nordborg
fixed
9:43 AM Ticket #812 (Pilot report wizard) closed by Nicklas Nordborg
fixed
9:35 AM Changeset [3566] by Nicklas Nordborg
References #810: Gene report combiner plug-in should be able to …

Oct 28, 2015:

2:46 PM Ticket #818 (Track volumes of RNAQC aliquots) closed by Nicklas Nordborg
fixed
2:45 PM Changeset [3565] by Nicklas Nordborg
References #821: Remote registration of RunParameters?.xml in Register …
1:57 PM Ticket #821 (Remote registration of RunParameters.xml in Register sequencing ...) closed by Nicklas Nordborg
fixed: (In [3564]) Fixes #821: Remote registration of RunParameters?.xml in …
1:57 PM Changeset [3564] by Nicklas Nordborg
Fixes #821: Remote registration of RunParameters?.xml in Register …
9:14 AM Ticket #821 (Remote registration of RunParameters.xml in Register sequencing ...) created by Nicklas Nordborg
The "Register sequencing started" requires that the …
8:04 AM Changeset [3563] by Nicklas Nordborg
References #810: Gene report combiner plug-in should be able to …

Oct 27, 2015:

2:05 PM Ticket #810 (Gene report combiner plug-in should be able to combine to a zip file) reopened by Nicklas Nordborg
Re-opening this ticket in order to add support for password-protected …
8:54 AM Changeset [3562] by olle
Refs #801. Refs #816. Bug fix: JSP file edit_libprep_kit_details.jsp
8:42 AM Changeset [3561] by olle
Refs #801. Refs #816. JSP file inspect_lib_prep_kit_data.jsp and …
8:03 AM Changeset [3560] by olle
Refs #801. Refs #816. Wizard "Inspect library preparation kit data" in …

Oct 22, 2015:

1:59 PM Changeset [3559] by Nicklas Nordborg
References #817: Always display rna box position in normalization …

Oct 21, 2015:

2:16 PM Changeset [3558] by Nicklas Nordborg
References #818: Track volumes of RNAQC aliquots Adding files for the …
2:13 PM Changeset [3557] by Nicklas Nordborg
References #812: Pilot report wizard Adding "Pilot report" thumbnail …
2:12 PM Changeset [3556] by Nicklas Nordborg
References #812: Pilot report wizard Adjusting text and plot …
8:50 AM Changeset [3555] by Nicklas Nordborg
References #818: Track volumes of RNAQC aliquots The 'Import RQS …

Oct 20, 2015:

3:48 PM Changeset [3554] by olle
Refs #801. Refs #816. Sub-section "Reagent kit management wizards" is …
1:00 PM Changeset [3553] by olle
Refs #801. Refs #816. Wizards "Add new consumables lot number file" …
11:29 AM Changeset [3552] by olle
Refs #801. Refs #816. Wizards "Add new consumables lot number file" …
11:00 AM Changeset [3551] by olle
Refs #801. Refs #816. Wizard "Add new consumables lot number file" in …

Oct 19, 2015:

1:57 PM Ticket #819 (Printable lab protocol from Create aliquots on Bioanalyzer/Caliper ...) closed by Nicklas Nordborg
fixed
1:56 PM Changeset [3550] by Nicklas Nordborg
References #818: Track volumes of RNAQC aliquots Bioanalyzer volume …
11:48 AM Ticket #820 (Add "Inconclusive" as an option to the IHCQuality annotation) closed by Nicklas Nordborg
fixed: (In [3549]) Fixes #820: Add "Inconclusive" as an option to the …
11:48 AM Changeset [3549] by Nicklas Nordborg
Fixes #820: Add "Inconclusive" as an option to the IHCQuality annotation
11:43 AM Changeset [3548] by Nicklas Nordborg
References #812: Pilot report wizard Adjusting text and plot …
11:11 AM Ticket #820 (Add "Inconclusive" as an option to the IHCQuality annotation) created by Nicklas Nordborg
The installation wizard should install this option and the scoring …

Oct 16, 2015:

11:53 AM Changeset [3547] by olle
Refs #801. Refs #816. Sub-section "Reagent kit management wizards" …
10:30 AM Changeset [3546] by olle
Refs #801. Refs #816. Wizard "Add new consumables lot number file" in …
9:55 AM Changeset [3545] by Nicklas Nordborg
References #818: Track volumes of RNAQC aliquots Changes the default …

Oct 15, 2015:

10:46 AM Changeset [3544] by Nicklas Nordborg
References #819: Printable lab protocol from Create aliquots on …

Oct 14, 2015:

2:11 PM Changeset [3543] by Nicklas Nordborg
References #812: Pilot report wizard Minor adjusments to text …
9:51 AM Changeset [3542] by Nicklas Nordborg
References #812: Pilot report wizard Importing the …
9:35 AM Changeset [3541] by Nicklas Nordborg
References #812: Pilot report wizard Setting R source encoding to …
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