Timeline


and

Oct 1, 2015:

4:48 PM Changeset [3523] by olle
Refs #801. Refs #816. Updates due to version number change to …
4:46 PM Ticket #816 (MeLuDI v.1.3.3 bug fixes and improvements) created by olle
This ticket covers bug fixes and improvements to MeLuDI v.1.3.3.
4:42 PM Milestone MeLuDI v1.3.3 completed
Updates of the MeLuDI extension to BASE, a package of registration …
4:38 PM Ticket #815 (MeLuDI v.1.3.2 bug fixes and improvements) closed by olle
fixed: Ticket closed as MeLuDI version 1.3.3 has been created.
4:31 PM PluginDownload edited by olle
Added information on MeLuDI 1.3.3 (diff)
4:30 PM net.sf.basedb.meludi edited by olle
Added information on MeLuDI 1.3.3 (diff)
4:25 PM meludi-1.3.3.tar.gz attached to net.sf.basedb.meludi by olle
MeLuDI BASE extension package version 1.3.3
4:21 PM Changeset [3522] by olle
Tagging release 1.3.3
4:17 PM Changeset [3521] by olle
Refs #801. Refs #815. Updates due to version number change to …
4:00 PM net.sf.basedb.meludi.notes1_3_3 created by olle
Added information on MeLuDI 1.3.3
3:05 PM Changeset [3520] by olle
Refs #801. Refs #815. Javascript file select_dna.js in …
2:51 PM Changeset [3519] by olle
Refs #801. Refs #815. Wizard "Create new start DNA plate" updated …
2:22 PM Changeset [3518] by olle
Refs #801. Refs #815. Since it may take some time before the list of …
1:57 PM Changeset [3517] by olle
Refs #815. Bug fix: The wizard "DNA/RNA registration/quantification" …
12:55 PM Changeset [3516] by olle
Refs #815. Bug fix: The wizard "Update processed start lists with lot …

Sep 30, 2015:

10:55 AM net.sf.basedb.meludi.background_software_info edited by olle
Added info on BASE annotations (diff)
10:09 AM net.sf.basedb.meludi.background_software_info edited by olle
Added info on MeLuDI project vs. software clarification (diff)
10:07 AM net.sf.basedb.meludi.background_software_info edited by olle
Added info on MeLuDI project vs. software (diff)
9:03 AM net.sf.basedb.meludi.background_software_info edited by olle
Added more info in the description section. (diff)
8:51 AM net.sf.basedb.meludi.background_software_info created by olle
Added initial version of wiki page.

Sep 29, 2015:

2:14 PM Changeset [3515] by olle
Refs #815. The "MeLuDI quarter/month report" in the "Sample processing …
12:27 PM Changeset [3514] by olle
Refs #815. Java servlet class/file …

Sep 24, 2015:

12:33 PM PluginDownload edited by olle
Added information on MeLuDI 1.3.2 (diff)
12:29 PM meludi-1.3.2.tar.gz attached to net.sf.basedb.meludi by olle
MeLuDI BASE extension package version 1.3.2
11:15 AM Ticket #811 (Add support for adding personal information to the Gene report ...) closed by nicklas
fixed
11:15 AM Ticket #810 (Gene report combiner plug-in should be able to combine to a zip file) closed by nicklas
fixed
11:13 AM Changeset [3513] by nicklas
References #812: Pilot report wizard Fixes title on the "Gene/Pilot?
9:56 AM Changeset [3512] by olle
Refs #801. Refs #815. Updates due to version number change to …
9:51 AM Ticket #815 (MeLuDI v.1.3.2 bug fixes and improvements) created by olle
This ticket covers bug fixes and improvements to MeLuDI v.1.3.2.
9:48 AM Milestone MeLuDI v1.3.2 completed
Updates of the MeLuDI extension to BASE, a package of registration …
9:39 AM Ticket #802 (MeLuDI v.1.3.1 bug fixes and improvements) closed by olle
fixed: Ticket closed as MeLuDI version 1.3.2 has been created.
9:37 AM net.sf.basedb.meludi edited by olle
Added information on MeLuDI 1.3.2 (diff)
9:25 AM Changeset [3511] by olle
Tagging release 1.3.2
9:18 AM Ticket #814 (New 1x16 pool layout that is offset to the left) closed by nicklas
fixed: (In [3510]) Fixes #814: New 1x16 pool layout that is offset to the left
9:18 AM Changeset [3510] by nicklas
Fixes #814: New 1x16 pool layout that is offset to the left
9:17 AM Ticket #814 (New 1x16 pool layout that is offset to the left) created by nicklas
To avoid issues with rotating the plate in the lab the placement of …
9:15 AM Changeset [3509] by olle
Refs #802. Updates due to version number change to "1.3.2". 1. …
9:10 AM Changeset [3508] by nicklas
References #812: Pilot report wizard The auto-confirmation service …
9:02 AM Changeset [3507] by olle
Refs #802. MeLuDI README file in / updated with minor changes, …
8:38 AM net.sf.basedb.meludi.notes1_3_2 edited by olle
Update instructions reformatted in new order (diff)
8:25 AM net.sf.basedb.meludi.notes1_3_2 edited by olle
Removed old stuff erroneously kept (diff)
8:21 AM net.sf.basedb.meludi.notes1_3_2 edited by olle
Minor changes to information on MeLuDI 1.3.2 (diff)
7:56 AM net.sf.basedb.meludi.notes1_3_2 edited by olle
Completed information on MeLuDI 1.3.2 (and removed old stuff) (diff)

Sep 23, 2015:

4:30 PM net.sf.basedb.meludi.notes1_3_2 created by olle
Added information on MeLuDI 1.3.2
3:28 PM Changeset [3506] by nicklas
References #812: Pilot report wizard Refactored the reporting …
3:16 PM Changeset [3505] by olle
Refs #802. Section "Statistics and reporting wizards" extended with a …
12:41 PM Changeset [3504] by olle
Refs #802. Sample source report wizards updated to only include MeLuDI …

Sep 22, 2015:

1:41 PM Changeset [3503] by nicklas
References #811: Add support for adding personal information to the …
11:10 AM Changeset [3502] by olle
Refs #802. The "DNA/RNA extraction wizards" section updated with a new …

Sep 21, 2015:

3:53 PM Changeset [3501] by olle
Refs #802. The DNA/RNA extraction wizards updated to allow input of …
2:42 PM Changeset [3500] by nicklas
References #812: Pilot report wizard The combine reports plug-in now …
2:27 PM Changeset [3499] by nicklas
References #812: Pilot report wizard Refactored the gene report …

Sep 18, 2015:

2:22 PM Changeset [3498] by nicklas
References #810: Gene report combiner plug-in should be able to …
10:24 AM Milestone Reggie v3.6.1 completed
Bug fixes for Reggie 3.6. Revision Log: …
9:32 AM Changeset [3497] by nicklas
Merged Reggie 3.6.1 to trunk.
9:30 AM net.sf.basedb.reggie edited by nicklas
(diff)
9:30 AM net.sf.basedb.reggie edited by nicklas
Released Reggie 3.6.1 (diff)
9:28 AM reggie-3.6.1.tar.gz attached to net.sf.basedb.reggie by nicklas
Reggie 3.6.1
9:27 AM Changeset [3496] by nicklas
Tagging Reggie 3.6.1
9:26 AM Changeset [3495] by nicklas
Preparing to release Reggie 3.6.1.
9:23 AM Ticket #813 (IndexOutOfBoundsException when selecting 7 lysates in the Lab Tracking ...) closed by nicklas
fixed: (In [3494]) Fixes #813: IndexOutOfBoundsException? when selecting 7 …
9:23 AM Changeset [3494] by nicklas
Fixes #813: IndexOutOfBoundsException? when selecting 7 lysates in the …
9:19 AM Changeset [3493] by nicklas
Creating bugfix branch for Reggie 3.6
9:09 AM Ticket #813 (IndexOutOfBoundsException when selecting 7 lysates in the Lab Tracking ...) created by nicklas
[…] Seems to work for all 1-6 and 8-12 lysates.
9:01 AM Changeset [3492] by nicklas
References #812: Pilot report wizard Added a pilot wizard stub. The …

Sep 17, 2015:

10:38 AM Ticket #812 (Pilot report wizard) created by nicklas
A new report wizard for the clinical pilot project is needed. It is …
10:00 AM Ticket #811 (Add support for adding personal information to the Gene report ...) created by nicklas
Early versions of this plug-in had support for this so it should not …
9:53 AM Ticket #810 (Gene report combiner plug-in should be able to combine to a zip file) created by nicklas
The current version of the "Gene report combiner" plug-in takes the …
9:47 AM net.sf.basedb.reggie/HistoryOfReggie edited by nicklas
Added Reggie 3.6 screenshot (diff)
9:47 AM reggie-3.6.png attached to net.sf.basedb.reggie/HistoryOfReggie by nicklas
Reggie 3.6
9:42 AM PluginDownload edited by nicklas
Released Reggie 3.6 (diff)
9:42 AM Changeset [3491] by nicklas
Preparing for future release Reggie 3.7
9:40 AM Milestone Reggie v3.6 completed
See Reggie extension page for more information.
9:40 AM net.sf.basedb.reggie edited by nicklas
Released Reggie 3.6 (diff)
9:38 AM reggie-3.6.tar.gz attached to net.sf.basedb.reggie by nicklas
Reggie 3.6
9:37 AM Changeset [3490] by nicklas
Tagging Reggie 3.6
9:36 AM Changeset [3489] by nicklas
Preparing to release Reggie 3.6

Sep 16, 2015:

1:56 PM Ticket #808 (Import wizard for frozen tissue dates) closed by nicklas
fixed: (In [3488]) Fixes #808: Import wizard for frozen tissue dates The …
1:56 PM Changeset [3488] by nicklas
Fixes #808: Import wizard for frozen tissue dates The wizard and …
11:10 AM Ticket #809 (Improve performance of demux+merge step) closed by nicklas
fixed: Think it is time for some real tests now. What has been done so far …
11:08 AM Changeset [3487] by nicklas
References #809: Improve performance of demux+merge step Switched to …

Sep 15, 2015:

1:38 PM Changeset [3486] by nicklas
References #809: Improve performance of demux+merge step Start gzip …
8:13 AM Changeset [3485] by nicklas
References #809: Improve performance of demux+merge step Added time …

Sep 14, 2015:

2:33 PM Changeset [3484] by nicklas
References #808: Import wizard for frozen tissue dates Added …
9:42 AM Ticket #809 (Improve performance of demux+merge step) created by nicklas
Sometimes this step is taking too long time. Typical run times are …

Sep 11, 2015:

8:20 AM Ticket #808 (Import wizard for frozen tissue dates) created by nicklas
A new annotation FrozenTissueDate should be created and used for …

Sep 9, 2015:

11:10 AM Ticket #807 (Flag RNA checkboxes should not be checked when inactive) closed by nicklas
fixed: (In [3483]) Fixes #807: Flag RNA checkboxes should not be checked when …
11:10 AM Changeset [3483] by nicklas
Fixes #807: Flag RNA checkboxes should not be checked when inactive …
11:00 AM Ticket #806 (Confirmation wizards fail to report problems with deleting items as errors) closed by nicklas
fixed: (In [3482]) Fixes #806: Confirmation wizards fail to report problems …
11:00 AM Changeset [3482] by nicklas
Fixes #806: Confirmation wizards fail to report problems with deleting …
9:57 AM Ticket #807 (Flag RNA checkboxes should not be checked when inactive) created by nicklas
In the "Confirm demux..." wizard the "Flag RNA" and "Align" checkboxes …
9:51 AM Ticket #806 (Confirmation wizards fail to report problems with deleting items as errors) created by nicklas
This is caused by a BASE bug: …
8:19 AM Ticket #805 (LinkedSpecimen should set value for items with missing date) closed by nicklas
fixed: (In [3481]) Fixes #805: LinkedSpecimen? should set value for items with …
8:19 AM Changeset [3481] by nicklas
Fixes #805: LinkedSpecimen? should set value for items with missing …
8:16 AM Ticket #805 (LinkedSpecimen should set value for items with missing date) created by nicklas
The first case in the bullet list: * If the patient has any specimen …

Sep 8, 2015:

1:43 PM net.sf.basedb.yubikey/using edited by nicklas
Information about root account was outdated (diff)

Sep 4, 2015:

12:37 PM Changeset [3480] by olle
Refs #802. DNA/RNA extraction wizard for lab tracking protocol for …
11:30 AM Ticket #804 (Lab tracking protocol for Allprep isolation should include volume of ...) closed by nicklas
fixed: (In [3479]) Fixes #804: Lab tracking protocol for Allprep isolation …
11:30 AM Changeset [3479] by nicklas
Fixes #804: Lab tracking protocol for Allprep isolation should include …

Sep 3, 2015:

2:36 PM Changeset [3478] by olle
Refs #802. MeLuDI case registration updated to create storage box …
2:01 PM Changeset [3477] by jari
Added note on what is considered a negative control.
1:31 PM Ticket #804 (Lab tracking protocol for Allprep isolation should include volume of ...) created by nicklas
The volume of RNAse free water to use in the QIAcube depends on the …
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