Timeline



Jun 8, 2015:

5:13 PM Ticket #792 (MeLuDI v.1.2.5 bug fixes and improvements) updated by olle
Traceability note: * MeLuDi v.1.0 was introduced in Ticket #690
5:12 PM Ticket #792 (MeLuDI v.1.2.5 bug fixes and improvements) updated by olle
Status changed
Ticket accepted.
5:12 PM Ticket #792 (MeLuDI v.1.2.5 bug fixes and improvements) updated by olle
Ticket accepted.
5:11 PM Ticket #792 (MeLuDI v.1.2.5 bug fixes and improvements) created by olle
This ticket covers bug fixes and improvements to MeLuDI v.1.2.5.
5:06 PM Milestone MeLuDI v1.2.5 completed
Updates of the MeLuDI extension to BASE, a package of registration …
5:06 PM Ticket #786 (MeLuDI v.1.2.4 bug fixes and improvements) closed by olle
fixed: Ticket closed as MeLuDI version 1.2.5 has been created.
5:04 PM net.sf.basedb.meludi edited by olle
Added information on MeLuDI 1.2.5 (diff)
5:01 PM Ticket #786 (MeLuDI v.1.2.4 bug fixes and improvements) updated by olle
Milestone changed
Milestone renamed
4:50 PM PluginDownload edited by olle
Added information on MeLuDI 1.2.5 (diff)
4:41 PM meludi-1.2.5.tar.gz attached to net.sf.basedb.meludi by olle
MeLuDI BASE extension package version 1.2.5
4:37 PM Changeset [3371] by olle
Creating MeLuDI tag 1.2.5
4:21 PM Ticket #786 (MeLuDI v.1.2.4 bug fixes and improvements) updated by olle
(In [3370]) Refs #786. Updates due to version number change to …
4:21 PM Changeset [3370] by olle
Refs #786. Updates due to version number change to "1.2.5". 1. …
2:06 PM Ticket #791 (Upload microscope images in the histology scoring wizard) updated by Nicklas Nordborg
(In [3369]) References #791: Upload microscope images in the histology …
2:06 PM Changeset [3369] by Nicklas Nordborg
References #791: Upload microscope images in the histology scoring …
11:55 AM Ticket #791 (Upload microscope images in the histology scoring wizard) updated by Nicklas Nordborg
(In [3368]) References #791: Upload microscope images in the histology …
11:55 AM Changeset [3368] by Nicklas Nordborg
References #791: Upload microscope images in the histology scoring …

Jun 5, 2015:

1:37 PM Ticket #791 (Upload microscope images in the histology scoring wizard) updated by Nicklas Nordborg
(In [3367]) References #791: Upload microscope images in the histology …
1:37 PM Changeset [3367] by Nicklas Nordborg
References #791: Upload microscope images in the histology scoring …
1:33 PM Ticket #791 (Upload microscope images in the histology scoring wizard) updated by Nicklas Nordborg
Status, Milestone changed

Jun 4, 2015:

3:44 PM Ticket #791 (Upload microscope images in the histology scoring wizard) created by Nicklas Nordborg
We should implement an image upload feature in the Histology scoring …
3:35 PM Ticket #790 (Add new site: Jönköping) created by Nicklas Nordborg
Jönköping. Site prefix: 99 Start date: 2015-06-11
7:45 AM Ticket #728 (Get rid of SQLite) closed by Nicklas Nordborg
fixed: (In [3366]) Fixes #728: Get rid of SQLite Removed the SQLite jar file …
7:45 AM Changeset [3366] by Nicklas Nordborg
Fixes #728: Get rid of SQLite Removed the SQLite jar file and the …
7:37 AM Tickets #728,​789 batch updated by Nicklas Nordborg
Milestone changed

Jun 3, 2015:

12:23 PM Ticket #786 (MeLuDI v.1.2.4 bug fixes and improvements) updated by olle
(In [3365]) Refs #786. DNA/RNA extraction wizards updated to not allow …
12:23 PM Changeset [3365] by olle
Refs #786. DNA/RNA extraction wizards updated to not allow editing the …
12:19 PM Ticket #786 (MeLuDI v.1.2.4 bug fixes and improvements) updated by olle
Functional specification update: * DNA/RNA extraction wizards should …

Jun 2, 2015:

4:13 PM Ticket #789 (LabEnv links in Case Summary do not work with BASE 3.5) updated by olle
Summary changed
Grammar fixed in ticket summary.
4:12 PM Ticket #789 (LabEnv links in Case Summary do not work with BASE 3.5) closed by olle
fixed: The ticket is closed since the added update fixes the problem on the …
4:10 PM Ticket #789 (LabEnv links in Case Summary do not work with BASE 3.5) updated by olle
Test: * The updated code was tested on a locally installed system, …
4:00 PM Ticket #789 (LabEnv links in Case Summary do not work with BASE 3.5) updated by olle
(In [3364]) Refs #789. Calls of functions in removed BASE javascript …
4:00 PM Changeset [3364] by olle
Refs #789. Calls of functions in removed BASE javascript library …
3:50 PM Ticket #789 (LabEnv links in Case Summary do not work with BASE 3.5) updated by olle
Problem analysis: * The error message pinpoints a statement in …
2:57 PM Ticket #789 (LabEnv links in Case Summary do not work with BASE 3.5) updated by olle
Traceability note: * The lab environment extension was introduced in …
2:46 PM Ticket #789 (LabEnv links in Case Summary do not work with BASE 3.5) updated by olle
Status changed
Ticket accepted.
2:45 PM Ticket #789 (LabEnv links in Case Summary do not work with BASE 3.5) created by olle
Clicking on a LabEnv link for an item in the Case Summary opens up a …

Jun 1, 2015:

2:47 PM Ticket #787 (Add support for BloodDNA items) updated by olle
(In [3363]) Refs #787. Retraction wizard updated in the destruction …
2:47 PM Changeset [3363] by olle
Refs #787. Retraction wizard updated in the destruction part by adding …
2:21 PM Ticket #788 (NullPointerException when registering libraries) closed by Nicklas Nordborg
fixed
2:18 PM Ticket #788 (NullPointerException when registering libraries) updated by Nicklas Nordborg
(In [3362]) References #788: NullPointerException when registering …
2:18 PM Changeset [3362] by Nicklas Nordborg
References #788: NullPointerException when registering libraries This …
11:37 AM Ticket #788 (NullPointerException when registering libraries) created by Nicklas Nordborg
Stacktrace is displayed when "Register" is clicked: […] …
9:38 AM Ticket #787 (Add support for BloodDNA items) updated by olle
(In [3361]) Refs #787. Retraction wizard updated in information …
9:38 AM Changeset [3361] by olle
Refs #787. Retraction wizard updated in information retrieval code to …

May 29, 2015:

2:15 PM Ticket #787 (Add support for BloodDNA items) updated by olle
(In [3360]) Refs #787. Retraction wizard updated in the first step …
2:15 PM Changeset [3360] by olle
Refs #787. Retraction wizard updated in the first step with support …
1:00 PM Ticket #787 (Add support for BloodDNA items) updated by olle
(In [3359]) Refs #787. Retraction wizard was updated in registration …
1:00 PM Changeset [3359] by olle
Refs #787. Retraction wizard was updated in registration part of the …
11:10 AM Ticket #787 (Add support for BloodDNA items) updated by olle
(In [3358]) Refs #787. Retraction wizard was updated in the first step …
11:10 AM Changeset [3358] by olle
Refs #787. Retraction wizard was updated in the first step to support …
10:59 AM Ticket #787 (Add support for BloodDNA items) updated by olle
Problem detected: * While testing out support for BloodDNA items, it …

May 28, 2015:

2:45 PM Ticket #787 (Add support for BloodDNA items) updated by olle
Traceability note for Retraction wizard: * The retraction wizard was …
2:39 PM Ticket #787 (Add support for BloodDNA items) updated by olle
Status changed
Ticket accepted
1:18 PM Ticket #787 (Add support for BloodDNA items) updated by Nicklas Nordborg
Status, Owner changed
1:13 PM Ticket #787 (Add support for BloodDNA items) updated by Nicklas Nordborg
(In [3357]) References #787: Add support for BloodDNA items Adding …
1:13 PM Changeset [3357] by Nicklas Nordborg
References #787: Add support for BloodDNA items Adding file that …
1:10 PM Ticket #787 (Add support for BloodDNA items) updated by Nicklas Nordborg
(In [3356]) References #787: Add support for BloodDNA items Adding …
1:10 PM Changeset [3356] by Nicklas Nordborg
References #787: Add support for BloodDNA items Adding "Blood DNA" …
8:32 AM Ticket #787 (Add support for BloodDNA items) updated by Nicklas Nordborg
(In [3355]) References #787: Add support for BloodDNA items Create …
8:32 AM Changeset [3355] by Nicklas Nordborg
References #787: Add support for BloodDNA items Create the BloodDNA
8:27 AM Ticket #787 (Add support for BloodDNA items) updated by Nicklas Nordborg
Summary changed
8:18 AM Ticket #787 (Add support for BloodDNA items) updated by Nicklas Nordborg
Status changed

May 27, 2015:

4:18 PM Ticket #786 (MeLuDI v.1.2.4 bug fixes and improvements) updated by olle
(In [3354]) Refs #786. Bug fixed in javascript refactoring leading to …
4:18 PM Changeset [3354] by olle
Refs #786. Bug fixed in javascript refactoring leading to user-defined …
4:03 PM Ticket #786 (MeLuDI v.1.2.4 bug fixes and improvements) updated by olle
Functional specification update: * A bug was introduced in the …
1:20 PM Ticket #787 (Add support for BloodDNA items) created by Nicklas Nordborg
BloodDNA items are child items (Extracts) to Blood samples. They …

May 26, 2015:

1:54 PM Ticket #786 (MeLuDI v.1.2.4 bug fixes and improvements) updated by olle
(In [3353]) Refs #786. Javascript file edit_dnarna_details.js in …
1:54 PM Changeset [3353] by olle
Refs #786. Javascript file edit_dnarna_details.js in …
1:34 PM Ticket #786 (MeLuDI v.1.2.4 bug fixes and improvements) updated by olle
(In [3352]) Refs #786. Javascript files in DNA/RNA extraction wizards …
1:34 PM Changeset [3352] by olle
Refs #786. Javascript files in DNA/RNA extraction wizards refactored …
12:51 PM Ticket #786 (MeLuDI v.1.2.4 bug fixes and improvements) updated by olle
Refactoring: * Javascript files in DNA/RNA extraction wizards should …
11:59 AM Ticket #786 (MeLuDI v.1.2.4 bug fixes and improvements) updated by olle
(In [3351]) Refs #786. Bug of omission fixed in code for edit pop-up …
11:59 AM Changeset [3351] by olle
Refs #786. Bug of omission fixed in code for edit pop-up dialogs in …
11:55 AM Ticket #786 (MeLuDI v.1.2.4 bug fixes and improvements) updated by olle
Functional specification update: * A bug of omission was introduced …

May 25, 2015:

11:59 AM Ticket #786 (MeLuDI v.1.2.4 bug fixes and improvements) updated by olle
(In [3350]) Refs #786. Bug fixed in DNA/RNA extraction wizards on how …
11:59 AM Changeset [3350] by olle
Refs #786. Bug fixed in DNA/RNA extraction wizards on how to …
11:54 AM Ticket #786 (MeLuDI v.1.2.4 bug fixes and improvements) updated by olle
Functional specification update: * A bug was introduced in DNA/RNA …
9:52 AM Ticket #786 (MeLuDI v.1.2.4 bug fixes and improvements) updated by olle
(In [3349]) Refs #786 Updates due to version number change to …
9:52 AM Changeset [3349] by olle
Refs #786 Updates due to version number change to "1.3-dev". 1. …
9:41 AM Changeset [3348] by Nicklas Nordborg
Seems like it works…
9:40 AM Changeset [3347] by Nicklas Nordborg
Testing if it is possible to commit…

May 20, 2015:

7:36 AM Ticket #786 (MeLuDI v.1.2.4 bug fixes and improvements) updated by olle
Traceability note: * MeLuDi v.1.0 was introduced in Ticket #690
7:35 AM Ticket #786 (MeLuDI v.1.2.4 bug fixes and improvements) updated by olle
Status changed
Ticket accepted.

May 19, 2015:

3:38 PM Ticket #786 (MeLuDI v.1.2.4 bug fixes and improvements) created by olle
This ticket covers bug fixes and improvements to MeLuDI v.1.2.4.
3:35 PM Milestone MeLuDI v1.2.4 completed
Updates of the MeLuDI extension to BASE, a package of registration …
3:33 PM Ticket #777 (MeLuDI v.1.2.3 bug fixes and improvements) closed by olle
fixed: Ticket closed as MeLuDI version 1.2.4 has been created.
3:31 PM Ticket #777 (MeLuDI v.1.2.3 bug fixes and improvements) updated by olle
Milestone changed
Milestone renamed
3:30 PM PluginDownload edited by olle
Added information on MeLuDI 1.2.4 (diff)
2:58 PM net.sf.basedb.meludi edited by olle
Added information on MeLuDI 1.2.4 (diff)
2:53 PM meludi-1.2.4.tar.gz attached to net.sf.basedb.meludi by olle
MeLuDI BASE extension package version 1.2.4
2:44 PM Changeset [3346] by Nicklas Nordborg
Tagging release 1.2.4
1:47 PM Ticket #777 (MeLuDI v.1.2.3 bug fixes and improvements) updated by olle
(In [3345]) Refs #777. Updates due to version number change to …
1:47 PM Changeset [3345] by olle
Refs #777. Updates due to version number change to "1.2.4". 1. …
1:42 PM Ticket #777 (MeLuDI v.1.2.3 bug fixes and improvements) updated by olle
(In [3344]) Refs #777. MeLuDI updated to report id values in error …
1:42 PM Changeset [3344] by olle
Refs #777. MeLuDI updated to report id values in error message if …
1:40 PM Ticket #772 (New sample annotation (LinkedSpecimen) to highlight prior specimen) updated by Nicklas Nordborg
On the meeting today we discussed potential problems with this …
1:30 PM Ticket #785 (Separate project archive folder for external samples) created by Nicklas Nordborg
The library preparation/sequencing wizards have support for processing …
1:29 PM Ticket #777 (MeLuDI v.1.2.3 bug fixes and improvements) updated by olle
(In [3343]) Refs #777. MeLuDI updated to report id values in error …
1:29 PM Changeset [3343] by olle
Refs #777. MeLuDI updated to report id values in error message if …
1:08 PM Milestone Reggie v3.3.3 completed
1:01 PM Changeset [3342] by Nicklas Nordborg
Merge Reggie 3.3.3 to the trunk.
12:59 PM PluginDownload edited by Nicklas Nordborg
Released Reggie 3.3.3 (diff)
12:59 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 3.3.3 (diff)
12:57 PM reggie-3.3.3.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 3.3.3
12:56 PM Changeset [3341] by Nicklas Nordborg
Tagging Reggie 3.3.3
12:55 PM Changeset [3340] by Nicklas Nordborg
Preparing to release Reggie 3.3.3.
12:47 PM Ticket #784 (Can't create new histology work list) closed by Nicklas Nordborg
fixed: (In [3339]) Fixes #784: Can't create new histology work list The …
12:47 PM Changeset [3339] by Nicklas Nordborg
Fixes #784: Can't create new histology work list The query for …
8:51 AM Ticket #784 (Can't create new histology work list) updated by Nicklas Nordborg
Status, Milestone changed
8:50 AM Ticket #784 (Can't create new histology work list) updated by Nicklas Nordborg
Seems like the fixes in #750 that should take care of the …
8:49 AM Ticket #784 (Can't create new histology work list) created by Nicklas Nordborg
Start the "Lab tracking protocol for FFPE/HE" wizard and click the …
7:52 AM Ticket #770 (Retraction wizard - Step 3: Destruction) updated by olle
(In [3338]) Refs #770. Retraction wizard updated in destruction part …
7:52 AM Changeset [3338] by olle
Refs #770. Retraction wizard updated in destruction part by commenting …

May 18, 2015:

4:22 PM Ticket #770 (Retraction wizard - Step 3: Destruction) updated by olle
(In [3337]) Refs #770. Retraction wizard updated with first version of …
4:22 PM Changeset [3337] by olle
Refs #770. Retraction wizard updated with first version of the …
4:17 PM Ticket #770 (Retraction wizard - Step 3: Destruction) updated by olle
Functional specification for the retraction destruction part: 1. …

May 13, 2015:

1:11 PM Ticket #777 (MeLuDI v.1.2.3 bug fixes and improvements) updated by olle
(In [3336]) Refs #777. MeLuDI Lab Tracking Sheet/Report layout …
1:11 PM Changeset [3336] by olle
Refs #777. MeLuDI Lab Tracking Sheet/Report layout update: a. …
1:08 PM Ticket #777 (MeLuDI v.1.2.3 bug fixes and improvements) updated by olle
Functional specification update: * MeLuDI Lab Tracking Sheet/Report …
12:03 PM Ticket #777 (MeLuDI v.1.2.3 bug fixes and improvements) updated by olle
(In [3335]) Refs #777. Bug fixed that prevented import of …
12:03 PM Changeset [3335] by olle
Refs #777. Bug fixed that prevented import of concentration values …
9:27 AM Ticket #770 (Retraction wizard - Step 3: Destruction) updated by olle
(In [3334]) Refs #770. Java class/file RetractionServlet.java in …
9:27 AM Changeset [3334] by olle
Refs #770. Java class/file RetractionServlet.java in …
8:12 AM Ticket #770 (Retraction wizard - Step 3: Destruction) updated by olle
(In [3333]) Refs #770. Java class/file RetractionServlet.java in …
8:12 AM Changeset [3333] by olle
Refs #770. Java class/file RetractionServlet.java in …

May 12, 2015:

1:32 PM Ticket #770 (Retraction wizard - Step 3: Destruction) updated by olle
Traceability note: * The retraction wizard was updated in Ticket …
12:42 PM Ticket #777 (MeLuDI v.1.2.3 bug fixes and improvements) updated by olle
(In [3332]) Refs #777. MeLuDI updated in step 2 of DNA/RNA …
12:42 PM Changeset [3332] by olle
Refs #777. MeLuDI updated in step 2 of DNA/RNA …
12:40 PM Ticket #777 (MeLuDI v.1.2.3 bug fixes and improvements) updated by olle
Functional specification update: * MeLuDI should be updated in step …
12:17 PM Ticket #777 (MeLuDI v.1.2.3 bug fixes and improvements) updated by olle
(In [3331]) Refs #777. Javascript file extraction_formcopy.js in …
12:17 PM Changeset [3331] by olle
Refs #777. Javascript file extraction_formcopy.js in …
9:12 AM Ticket #783 (Switch to Java 8) created by Nicklas Nordborg
BASE 3.6 is moving on to Java 8 (http://base.thep.lu.se/ticket/1926). …
9:10 AM Ticket #782 (Fix compilation error when compiling against BASE 3.6) created by Nicklas Nordborg
When compiling Reggie against the BASE 3.6 JAR files we get 2 errors …
8:51 AM Ticket #764 (Support for neoprep in the library preparation) closed by Nicklas Nordborg
fixed
8:51 AM Ticket #764 (Support for neoprep in the library preparation) updated by Nicklas Nordborg
(In [3330]) References #764: Support for neoprep in the library …
8:51 AM Changeset [3330] by Nicklas Nordborg
References #764: Support for neoprep in the library preparation …
8:14 AM Ticket #764 (Support for neoprep in the library preparation) updated by Nicklas Nordborg
Description changed
8:10 AM Ticket #773 (The mRNA wizard must be smarter when auto-selecting pre-normalized RNA) closed by Nicklas Nordborg
fixed
8:09 AM Ticket #762 (Pre-normalization changes due to NeoPrep) closed by Nicklas Nordborg
fixed
8:09 AM net.sf.basedb.reggie/notes34 edited by Nicklas Nordborg
Adding update notes related to ticket #762 (diff)

May 11, 2015:

4:36 PM Ticket #777 (MeLuDI v.1.2.3 bug fixes and improvements) updated by olle
(In [3329]) Refs #777. MeLuDI Lab Tracking Sheet/Report updated by …
4:36 PM Changeset [3329] by olle
Refs #777. MeLuDI Lab Tracking Sheet/Report updated by replacing the …
4:35 PM Ticket #777 (MeLuDI v.1.2.3 bug fixes and improvements) updated by olle
Functional specification update: * MeLuDI Lab Tracking Sheet/Report …
2:42 PM Ticket #777 (MeLuDI v.1.2.3 bug fixes and improvements) updated by olle
(In [3328]) Refs #777. MeLuDI Lab Tracking Sheet/Report table updated …
2:42 PM Changeset [3328] by olle
Refs #777. MeLuDI Lab Tracking Sheet/Report table updated by making …
1:37 PM Tickets #780,​781 batch updated by Nicklas Nordborg
Status changed
1:36 PM Ticket #776 (An old storage box position can be re-used for new specimens) closed by Nicklas Nordborg
fixed: (In [3327]) Fixes #776: An old storage box position can be re-used for …
1:36 PM Changeset [3327] by Nicklas Nordborg
Fixes #776: An old storage box position can be re-used for new …
1:32 PM Ticket #776 (An old storage box position can be re-used for new specimens) updated by Nicklas Nordborg
Status, Milestone changed
1:17 PM Ticket #777 (MeLuDI v.1.2.3 bug fixes and improvements) updated by olle
(In [3326]) Refs #777. MeLuDI Lab Tracking Sheet/Report table updated …
1:17 PM Changeset [3326] by olle
Refs #777. MeLuDI Lab Tracking Sheet/Report table updated by making …
12:58 PM Ticket #781 (Clean up code in retraction wizard) updated by Nicklas Nordborg
(In [3325]) References #781: Clean up code in retraction wizard …
12:58 PM Changeset [3325] by Nicklas Nordborg
References #781: Clean up code in retraction wizard Removed code that …
12:35 PM Ticket #777 (MeLuDI v.1.2.3 bug fixes and improvements) updated by olle
(In [3324]) Refs #777. MeLuDI updated in DNA/RNA …
12:35 PM Changeset [3324] by olle
Refs #777. MeLuDI updated in DNA/RNA registration/quantification …
11:29 AM Ticket #781 (Clean up code in retraction wizard) updated by Nicklas Nordborg
(In [3323]) References #781: Clean up code in retraction wizard …
11:29 AM Changeset [3323] by Nicklas Nordborg
References #781: Clean up code in retraction wizard Merged …
10:58 AM Ticket #780 (Redesign Reggie start page) updated by Nicklas Nordborg
(In [3322]) References #780: Redesign Reggie start page Updated start …
10:58 AM Changeset [3322] by Nicklas Nordborg
References #780: Redesign Reggie start page Updated start page to the …
10:58 AM reggie-redesign-2.png attached to Ticket #780 by Nicklas Nordborg
Second version
9:43 AM Ticket #777 (MeLuDI v.1.2.3 bug fixes and improvements) updated by olle
Functional specification update: * MeLuDI should be updated in …
9:32 AM Ticket #764 (Support for neoprep in the library preparation) updated by Nicklas Nordborg
(In [3321]) References #764: Support for neoprep in the library …
9:32 AM Changeset [3321] by Nicklas Nordborg
References #764: Support for neoprep in the library preparation …
9:05 AM Ticket #764 (Support for neoprep in the library preparation) updated by Nicklas Nordborg
(In [3320]) References #764: Support for neoprep in the library …
9:05 AM Changeset [3320] by Nicklas Nordborg
References #764: Support for neoprep in the library preparation …
8:38 AM Ticket #781 (Clean up code in retraction wizard) created by Nicklas Nordborg
The two servlets used by the retraction wizards …
7:58 AM Ticket #764 (Support for neoprep in the library preparation) updated by Nicklas Nordborg
(In [3319]) References #764: Support for neoprep in the library …
7:58 AM Changeset [3319] by Nicklas Nordborg
References #764: Support for neoprep in the library preparation …
Note: See TracTimeline for information about the timeline view.