Timeline
Mar 18, 2015:
- 3:15 PM Milestone MeLuDi v1.2 completed
- Updates of the MeLuDi extension to BASE, a package of registration …
- 3:13 PM Ticket #759 (MeLuDi v.1.2 bug fixes and improvements) created by
- This ticket covers bug fixes and improvements to MeLuDi v.1.2.
- 3:03 PM PluginDownload edited by
- Added information on MeLuDi 1.2 (diff)
- 2:59 PM net.sf.basedb.meludi edited by
- Added information on MeLuDi 1.2 (diff)
- 2:58 PM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) closed by
- fixed: Ticket closed as MeLuDi version 1.2 has been created.
- 2:36 PM Changeset [3192] by
- Tagging release 1.2
- 2:20 PM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by
-
(In [3191]) Refs #725. Javascript file
case_summary.jsin … - 2:20 PM Changeset [3191] by
-
Refs #725. Javascript file
case_summary.jsinresources/reports/… - 2:09 PM Ticket #758 (Open grid sceduler jobs with no job id in BASE) created by
- For some reason a (cufflinks) job was submitted to the cluster but no …
- 1:52 PM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by
-
(In [3190]) Refs #725. Outermost
READMEfile updated for MeLuDi 1.2. - 1:52 PM Changeset [3190] by
-
Refs #725. Outermost
READMEfile updated for MeLuDi 1.2. - 1:30 PM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by
- (In [3189]) Refs #725. Updates due to version number change to …
- 1:30 PM Changeset [3189] by
-
Refs #725. Updates due to version number change to "
1.2". 1. … - 1:17 PM Ticket #757 (Some latest RNAQC items are not fetched in the Flagged RNA wizard) closed by
- fixed: (In [3188]) Fixes #757: Some latest RNAQC items are not fetched in the …
- 1:17 PM Changeset [3188] by
- Fixes #757: Some latest RNAQC items are not fetched in the Flagged RNA …
- 1:14 PM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by
- (In [3187]) Refs #725. Java servlet class/file …
- 1:14 PM Changeset [3187] by
-
Refs #725. Java servlet class/file
ExtractionServlet.javain … - 12:02 PM Ticket #757 (Some latest RNAQC items are not fetched in the Flagged RNA wizard) updated by
- (In [3186]) References #757: Some latest RNAQC items are not fetched …
- 12:02 PM Changeset [3186] by
- References #757: Some latest RNAQC items are not fetched in the …
- 11:52 AM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by
-
(In [3185]) Refs #725. Javascript file
meludi-2.jsinresources/… - 11:52 AM Changeset [3185] by
-
Refs #725. Javascript file
meludi-2.jsinresources/updated in … - 11:25 AM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by
-
(In [3184]) Refs #725. CSS file
meludi-2.cssinresources/css/… - 11:25 AM Changeset [3184] by
-
Refs #725. CSS file
meludi-2.cssinresources/css/updated with … - 10:09 AM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by
- (In [3183]) Refs #725. MeLuDi updated in the "DNA/RNA …
- 10:09 AM Changeset [3183] by
- Refs #725. MeLuDi updated in the "DNA/RNA …
- 9:50 AM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by
- Functional specification update of "DNA/RNA …
- 9:22 AM Ticket #756 (Display numbers with two decimals in the Flagged RNA wizard) closed by
- fixed: (In [3182]) Fixes #756: Display numbers with two decimals in the …
- 9:22 AM Changeset [3182] by
- Fixes #756: Display numbers with two decimals in the Flagged RNA …
- 8:36 AM Ticket #755 (Display unit for PF_READS in "Confirm demux" wizard) closed by
- fixed: (In [3181]) Fixes #755: Display unit for PF_READS in "Confirm demux" wizard
- 8:36 AM Changeset [3181] by
- Fixes #755: Display unit for PF_READS in "Confirm demux" wizard
- 7:49 AM Ticket #757 (Some latest RNAQC items are not fetched in the Flagged RNA wizard) created by
- The common pattern seems to be that the missing RNAQC items are not …
Mar 17, 2015:
- 11:56 AM Ticket #756 (Display numbers with two decimals in the Flagged RNA wizard) created by
- All numbers in the Flagged RNA wizard are typically displayed with …
- 11:54 AM Ticket #755 (Display unit for PF_READS in "Confirm demux" wizard) created by
- This value is currently displayed without unit.
- 11:51 AM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by
- (In [3180]) Refs #725. MeLuDi updated in the functionality for the …
- 11:51 AM Changeset [3180] by
- Refs #725. MeLuDi updated in the functionality for the DNA/RNA …
Mar 16, 2015:
- 8:07 AM net.sf.basedb.meludi.notes1_2 edited by
- Added note about adding extraction protocols. (diff)
Mar 12, 2015:
- 3:43 PM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by
- Design specification update: 1. Java class/file …
- 11:27 AM net.sf.basedb.meludi.notes1_2 created by
- First version of the MeLuDi 1.2 update notes page.
- 9:05 AM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by
- Functional specification updates for DNA/RNA extraction wizard(s) with …
Mar 9, 2015:
- 3:51 PM Ticket #753 (Case summary breaks if no stained histology has GoodStain) closed by
- fixed
- 3:51 PM Ticket #754 (Make case summary display more tolerant aginst problems) closed by
- fixed: (In [3179]) Fixes #754: Make case summary display more tolerant aginst …
- 3:51 PM Changeset [3179] by
- Fixes #754: Make case summary display more tolerant aginst problems …
- 3:49 PM Ticket #754 (Make case summary display more tolerant aginst problems) created by
- See #753 for a recent problem. It would be nice if the case summary …
- 3:46 PM Ticket #753 (Case summary breaks if no stained histology has GoodStain) updated by
- (In [3178]) References #753: Case summary breaks if no stained …
- 3:46 PM Changeset [3178] by
- References #753: Case summary breaks if no stained histology has …
- 2:20 PM Ticket #753 (Case summary breaks if no stained histology has GoodStain) updated by
-
Status, Milestone changed
- 2:20 PM Ticket #753 (Case summary breaks if no stained histology has GoodStain) created by
- Left column display ok down to Histology section. The "Score" section …
- 9:06 AM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by
- (In [3177]) Refs #725. Wizards "Lab tracking protocol for Allprep …
- 9:06 AM Changeset [3177] by
- Refs #725. Wizards "Lab tracking protocol for Allprep isolation" and …
Mar 6, 2015:
- 4:06 PM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by
- (In [3176]) Refs #725. MeLuDi updated with basic functionality for …
- 4:06 PM Changeset [3176] by
- Refs #725. MeLuDi updated with basic functionality for the DNA/RNA …
- 3:23 PM Changeset [3175] by
- Fixing typo.
- 3:22 PM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by
- Design specification updates related to the functional specification …
- 1:42 PM net.sf.basedb.reggie/HistoryOfReggie edited by
- Added Reggie 3.2 screenshot (diff)
- 1:36 PM Changeset [3174] by
- Preparing for future release Reggie 3.3
- 1:34 PM Milestone Reggie v3.2 completed
- See Reggie extension page for more information.
- 1:33 PM net.sf.basedb.reggie/notes32 edited by
- Added link to pipeline scripts (diff)
- 1:32 PM PluginDownload edited by
- Released Reggie 3.2 (diff)
- 1:30 PM net.sf.basedb.reggie edited by
- Released Reggie 3.2 (diff)
- 1:23 PM Changeset [3173] by
- Tagging Reggie 3.2
- 1:23 PM Changeset [3172] by
- Preparing to release Reggie 3.2
- 11:17 AM Ticket #752 (Schedule new RNAQC from Flagged RNA wizard) created by
- RNA items may be flagged due to low RQS/RIN value. It would be useful …
- 9:28 AM Ticket #751 (Set max-base-version to 3.5.0) closed by
- fixed: (In [3171]) Fixes #751: Set max-base-version to 3.5.0
- 9:28 AM Changeset [3171] by
- Fixes #751: Set max-base-version to 3.5.0
- 9:27 AM Ticket #750 (Changes required for BASE version 3.5) updated by
-
Description changed
- 9:27 AM Ticket #751 (Set max-base-version to 3.5.0) created by
- See #750 for information about upcoming changes to BASE 3.5. Changes …
- 9:25 AM Ticket #750 (Changes required for BASE version 3.5) created by
- BASE 3.5 will not be binary compatible with earlier BASE 3.x versions …
- 9:17 AM net.sf.basedb.reggie/notes32 created by
- Update notes for Reggie 3.2
- 8:58 AM net.sf.basedb.reggie edited by
- Preparing for release by adding a link to update notes for reggie 3.2 (diff)
- 8:55 AM Ticket #455 (Flagged RNA re-processing wizard) closed by
- fixed
- 8:54 AM Ticket #740 (Add support for reprocessing specimen) closed by
- fixed
- 8:53 AM Ticket #740 (Add support for reprocessing specimen) updated by
- (In [3170]) References #740: Add support for reprocessing specimen …
- 8:53 AM Changeset [3170] by
- References #740: Add support for reprocessing specimen Limit width of …
- 8:31 AM Ticket #746 (IHC-quality annotation) closed by
-
fixed: (In [3169]) Fixes #746: IHC-quality annotation
Added
IHCQuality… - 8:31 AM Changeset [3169] by
-
Fixes #746: IHC-quality annotation
Added
IHCQualityannotation type …
Mar 5, 2015:
- 2:45 PM Ticket #746 (IHC-quality annotation) updated by
-
Status changed
- 2:44 PM Ticket #748 (DNA/RNA/FlowThrough registration should have an option to load latest ...) closed by
- fixed: (In [3168]) Fixes #748: DNA/RNA/FlowThrough registration should have …
- 2:44 PM Changeset [3168] by
- Fixes #748: DNA/RNA/FlowThrough registration should have an option to …
- 2:27 PM Ticket #749 (Allow extraction of less than 12 samples) created by
- The current implementation of the DNA/RNA/FlowThrough registration …
- 10:31 AM Ticket #748 (DNA/RNA/FlowThrough registration should have an option to load latest ...) created by
- The registration form should be empty to begin with but there should …
- 10:28 AM Ticket #747 (Label file generated by the partition wizard should have even number ...) closed by
- fixed: (In [3167]) Fixes #747: Label file generated by the partition wizard …
- 10:28 AM Changeset [3167] by
- Fixes #747: Label file generated by the partition wizard should have …
- 9:26 AM Ticket #747 (Label file generated by the partition wizard should have even number ...) created by
- The label file is divided into two sections. The first section is the …
- 8:41 AM Ticket #455 (Flagged RNA re-processing wizard) updated by
- (In [3166]) References #455: Flagged RNA re-processing wizard …
- 8:41 AM Changeset [3166] by
- References #455: Flagged RNA re-processing wizard Cleaning up the …
- 7:59 AM Ticket #455 (Flagged RNA re-processing wizard) updated by
- (In [3165]) References #455: Flagged RNA re-processing wizard Added …
- 7:59 AM Changeset [3165] by
- References #455: Flagged RNA re-processing wizard Added 'Create …
Mar 4, 2015:
- 6:49 PM net.sf.basedb.illumina edited by
- Changelog for v1.7 should point at milestone for v1.7 (diff)
- 1:42 PM Ticket #455 (Flagged RNA re-processing wizard) updated by
- (In [3164]) References #455: Flagged RNA re-processing wizard Added …
- 1:42 PM Changeset [3164] by
- References #455: Flagged RNA re-processing wizard Added 'Re-process …
- 1:08 PM Ticket #455 (Flagged RNA re-processing wizard) updated by
- (In [3163]) References #455: Flagged RNA re-processing wizard Added …
- 1:08 PM Changeset [3163] by
-
References #455: Flagged RNA re-processing wizard
Added
PrepCurator… - 11:37 AM Ticket #455 (Flagged RNA re-processing wizard) updated by
- (In [3162]) References #455: Flagged RNA re-processing wizard Added …
- 11:37 AM Changeset [3162] by
- References #455: Flagged RNA re-processing wizard Added 'Flagged …
- 10:44 AM Ticket #455 (Flagged RNA re-processing wizard) updated by
- (In [3161]) References #455: Flagged RNA re-processing wizard Added …
- 10:44 AM Changeset [3161] by
- References #455: Flagged RNA re-processing wizard Added 'Unflag' …
- 9:08 AM Ticket #740 (Add support for reprocessing specimen) updated by
- (In [3160]) References #740: Add support for reprocessing specimen Typo.
- 9:08 AM Changeset [3160] by
- References #740: Add support for reprocessing specimen Typo.
- 9:07 AM Ticket #746 (IHC-quality annotation) created by
- #736 added support for annotating slides with an IHC annotation. For …
- 9:03 AM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by
- (In [3159]) Refs #725. Specimen tube registration without and with …
- 9:03 AM Changeset [3159] by
- Refs #725. Specimen tube registration without and with patient info …
- 9:01 AM Ticket #455 (Flagged RNA re-processing wizard) updated by
- (In [3158]) References #455: Flagged RNA re-processing wizard Started …
- 9:01 AM Changeset [3158] by
- References #455: Flagged RNA re-processing wizard Started with this …
- 8:36 AM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by
-
(In [3157]) Refs #725. Bug fixed in Javascript file
persinfo.jsin … - 8:36 AM Changeset [3157] by
-
Refs #725. Bug fixed in Javascript file
persinfo.jsin …
Mar 3, 2015:
- 7:31 AM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by
- (In [3156]) Refs #725. Bug fixed in case registration with patient …
- 7:31 AM Changeset [3156] by
- Refs #725. Bug fixed in case registration with patient info when …
Feb 27, 2015:
- 2:15 PM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by
- Functional specification updates for DNA/RNA extraction wizard(s): * …
- 10:40 AM Ticket #455 (Flagged RNA re-processing wizard) updated by
-
Status changed
- 10:38 AM Ticket #740 (Add support for reprocessing specimen) updated by
- (In [3155]) References #740: Add support for reprocessing specimen …
- 10:38 AM Changeset [3155] by
- References #740: Add support for reprocessing specimen Gray …
- 10:37 AM Ticket #744 (Lab protocol for RNAQC on BioAnalyzer) closed by
- fixed: (In [3154]) Fixes #744: Lab protocol for RNAQC on BioAnalyzer
- 10:37 AM Changeset [3154] by
- Fixes #744: Lab protocol for RNAQC on BioAnalyzer
- 8:10 AM Ticket #744 (Lab protocol for RNAQC on BioAnalyzer) updated by
-
Status changed
- 8:04 AM Ticket #740 (Add support for reprocessing specimen) updated by
- (In [3153]) References #740: Add support for reprocessing specimen …
- 8:04 AM Changeset [3153] by
- References #740: Add support for reprocessing specimen Adjustments to …
Feb 26, 2015:
- 1:55 PM Ticket #745 (Incorrect QiaCube positions in DNA/RNA/FlowThrough registration wizard) closed by
- fixed: (In [3152]) Fixes #745: Incorrect QiaCube positions in …
- 1:55 PM Changeset [3152] by
- Fixes #745: Incorrect QiaCube positions in DNA/RNA/FlowThrough …
- 1:26 PM Ticket #740 (Add support for reprocessing specimen) updated by
- (In [3151]) References #740: Add support for reprocessing specimen …
- 1:26 PM Changeset [3151] by
- References #740: Add support for reprocessing specimen Some minor …
- 1:10 PM Ticket #740 (Add support for reprocessing specimen) updated by
- (In [3150]) References #740: Add support for reprocessing specimen …
- 1:10 PM Changeset [3150] by
- References #740: Add support for reprocessing specimen Registration …
- 10:59 AM Ticket #745 (Incorrect QiaCube positions in DNA/RNA/FlowThrough registration wizard) created by
- The DNA/RNA/FlowThrough registration wizard only generate correct …
- 9:12 AM Ticket #740 (Add support for reprocessing specimen) updated by
- (In [3149]) References #740: Add support for reprocessing specimen …
- 9:12 AM Changeset [3149] by
- References #740: Add support for reprocessing specimen Loading new …
- 7:36 AM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by
- (In [3148]) Refs #725. Case registration with and without patient info …
- 7:36 AM Changeset [3148] by
- Refs #725. Case registration with and without patient info updated to …
Feb 25, 2015:
- 2:11 PM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by
- Functional specification update: * Case registration with and …
- 2:04 PM Ticket #740 (Add support for reprocessing specimen) updated by
- (In [3147]) References #740: Add support for reprocessing specimen …
- 2:04 PM Changeset [3147] by
- References #740: Add support for reprocessing specimen Comparing …
- 1:08 PM Ticket #740 (Add support for reprocessing specimen) updated by
- (In [3146]) References #740: Add support for reprocessing specimen …
- 1:08 PM Changeset [3146] by
- References #740: Add support for reprocessing specimen Label …
- 11:20 AM Ticket #740 (Add support for reprocessing specimen) updated by
- (In [3145]) References #740: Add support for reprocessing specimen …
- 11:20 AM Changeset [3145] by
- References #740: Add support for reprocessing specimen Started to …
Feb 24, 2015:
- 2:03 PM Ticket #740 (Add support for reprocessing specimen) updated by
- (In [3144]) References #740: Add support for reprocessing specimen …
- 2:03 PM Changeset [3144] by
- References #740: Add support for reprocessing specimen Adds counter …
- 12:50 PM Ticket #740 (Add support for reprocessing specimen) updated by
-
Status changed
- 12:49 PM Ticket #744 (Lab protocol for RNAQC on BioAnalyzer) updated by
-
Priority, Type, Component, Owner, Milestone changed
- 12:48 PM Ticket #744 (Lab protocol for RNAQC on BioAnalyzer) created by
- We need wizard for creating a lab protocol when running RNAQC on …
- 12:35 PM Ticket #741 (AutoProcessing flag remains set on raw bioassays) closed by
- fixed: (In [3143]) Fixes #741: AutoProcessing flag remains set on raw …
- 12:35 PM Changeset [3143] by
- Fixes #741: AutoProcessing flag remains set on raw bioassays The …
- 11:55 AM Ticket #741 (AutoProcessing flag remains set on raw bioassays) updated by
-
I think this is a side-effect of #722. The
AutoProcessing=ReProcess… - 11:28 AM Ticket #739 (Gene report doesn't pick up default path to template.pdf) closed by
- fixed: (In [3142]) Fixes #739: Gene report doesn't pick up default path to …
- 11:28 AM Changeset [3142] by
- Fixes #739: Gene report doesn't pick up default path to template.pdf …
- 11:06 AM Ticket #743 (The second trimmomatic step in demux script may not include options) closed by
- fixed: (In [3141]) Fixes #743: The second trimmomatic step in demux script …
- 11:06 AM Changeset [3141] by
- Fixes #743: The second trimmomatic step in demux script may not …
- 11:06 AM Ticket #742 (Detect tiles with empty barcode files) closed by
- fixed: (In [3140]) Fixes #742: Detect tiles with empty barcode files The …
- 11:06 AM Changeset [3140] by
- Fixes #742: Detect tiles with empty barcode files The demux script …
- 10:55 AM Ticket #743 (The second trimmomatic step in demux script may not include options) created by
- When generating the script for the second trimmomatic step the options …
Feb 23, 2015:
- 1:04 PM Ticket #742 (Detect tiles with empty barcode files) created by
- The first step when demuxing is to call `picard …
Feb 20, 2015:
- 12:51 PM Ticket #741 (AutoProcessing flag remains set on raw bioassays) created by
- The secondary analysis auto-confirmation wizard managed to process a …
Feb 19, 2015:
- 2:52 PM Ticket #740 (Add support for reprocessing specimen) updated by
-
Description changed
- 9:30 AM Ticket #455 (Flagged RNA re-processing wizard) updated by
- We should start with implementing support for repartitioning from the …
- 8:36 AM Ticket #455 (Flagged RNA re-processing wizard) updated by
-
Milestone, Description changed
- 8:18 AM Ticket #740 (Add support for reprocessing specimen) created by
- It should be possible to reprocess specimen items that has already …
Feb 18, 2015:
- 11:20 AM Ticket #739 (Gene report doesn't pick up default path to template.pdf) created by
- In reggie-config.xml there is a setting for specifying the path to the …
Feb 16, 2015:
- 3:10 PM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by
- (In [3139]) Refs #725. Project focus updated with new option "GIST …
- 3:10 PM Changeset [3139] by
- Refs #725. P Project focus updated with new option "GIST …
- 3:05 PM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by
- Functional specification update: * Project focus should have a new …
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