Timeline


and

Mar 6, 2015:

4:06 PM Changeset [3176] by olle
Refs #725. MeLuDi updated with basic functionality for the DNA/RNA …
3:23 PM Changeset [3175] by jari
Fixing typo.
1:42 PM net.sf.basedb.reggie/HistoryOfReggie edited by nicklas
Added Reggie 3.2 screenshot (diff)
1:41 PM reggie-3.2.png attached to net.sf.basedb.reggie/HistoryOfReggie by nicklas
Reggie 3.2
1:36 PM Changeset [3174] by nicklas
Preparing for future release Reggie 3.3
1:34 PM Milestone Reggie v3.2 completed
See Reggie extension page for more information.
1:33 PM net.sf.basedb.reggie/notes32 edited by nicklas
Added link to pipeline scripts (diff)
1:32 PM PluginDownload edited by nicklas
Released Reggie 3.2 (diff)
1:30 PM net.sf.basedb.reggie edited by nicklas
Released Reggie 3.2 (diff)
1:25 PM reggie-3.2.tar.gz attached to net.sf.basedb.reggie by nicklas
Reggie 3.2
1:23 PM Changeset [3173] by nicklas
Tagging Reggie 3.2
1:23 PM Changeset [3172] by nicklas
Preparing to release Reggie 3.2
11:17 AM Ticket #752 (Schedule new RNAQC from Flagged RNA wizard) created by nicklas
RNA items may be flagged due to low RQS/RIN value. It would be useful …
9:28 AM Ticket #751 (Set max-base-version to 3.5.0) closed by nicklas
fixed: (In [3171]) Fixes #751: Set max-base-version to 3.5.0
9:28 AM Changeset [3171] by nicklas
Fixes #751: Set max-base-version to 3.5.0
9:27 AM Ticket #751 (Set max-base-version to 3.5.0) created by nicklas
See #750 for information about upcoming changes to BASE 3.5. Changes …
9:25 AM Ticket #750 (Changes required for BASE version 3.5) created by nicklas
BASE 3.5 will not be binary compatible with earlier BASE 3.x versions …
9:17 AM net.sf.basedb.reggie/notes32 created by nicklas
Update notes for Reggie 3.2
8:58 AM net.sf.basedb.reggie edited by nicklas
Preparing for release by adding a link to update notes for reggie 3.2 (diff)
8:55 AM Ticket #455 (Flagged RNA re-processing wizard) closed by nicklas
fixed
8:54 AM Ticket #740 (Add support for reprocessing specimen) closed by nicklas
fixed
8:53 AM Changeset [3170] by nicklas
References #740: Add support for reprocessing specimen Limit width of …
8:31 AM Ticket #746 (IHC-quality annotation) closed by nicklas
fixed: (In [3169]) Fixes #746: IHC-quality annotation Added IHCQuality
8:31 AM Changeset [3169] by nicklas
Fixes #746: IHC-quality annotation Added IHCQuality annotation type …

Mar 5, 2015:

2:44 PM Ticket #748 (DNA/RNA/FlowThrough registration should have an option to load latest ...) closed by nicklas
fixed: (In [3168]) Fixes #748: DNA/RNA/FlowThrough registration should have …
2:44 PM Changeset [3168] by nicklas
Fixes #748: DNA/RNA/FlowThrough registration should have an option to …
2:27 PM Ticket #749 (Allow extraction of less than 12 samples) created by nicklas
The current implementation of the DNA/RNA/FlowThrough registration …
10:31 AM Ticket #748 (DNA/RNA/FlowThrough registration should have an option to load latest ...) created by nicklas
The registration form should be empty to begin with but there should …
10:28 AM Ticket #747 (Label file generated by the partition wizard should have even number ...) closed by nicklas
fixed: (In [3167]) Fixes #747: Label file generated by the partition wizard …
10:28 AM Changeset [3167] by nicklas
Fixes #747: Label file generated by the partition wizard should have …
9:26 AM Ticket #747 (Label file generated by the partition wizard should have even number ...) created by nicklas
The label file is divided into two sections. The first section is the …
8:41 AM Changeset [3166] by nicklas
References #455: Flagged RNA re-processing wizard Cleaning up the …
7:59 AM Changeset [3165] by nicklas
References #455: Flagged RNA re-processing wizard Added 'Create …

Mar 4, 2015:

6:49 PM net.sf.basedb.illumina edited by jari
Changelog for v1.7 should point at milestone for v1.7 (diff)
1:42 PM Changeset [3164] by nicklas
References #455: Flagged RNA re-processing wizard Added 'Re-process …
1:08 PM Changeset [3163] by nicklas
References #455: Flagged RNA re-processing wizard Added PrepCurator
11:37 AM Changeset [3162] by nicklas
References #455: Flagged RNA re-processing wizard Added 'Flagged …
10:44 AM Changeset [3161] by nicklas
References #455: Flagged RNA re-processing wizard Added 'Unflag' …
9:08 AM Changeset [3160] by nicklas
References #740: Add support for reprocessing specimen Typo.
9:07 AM Ticket #746 (IHC-quality annotation) created by nicklas
#736 added support for annotating slides with an IHC annotation. For …
9:03 AM Changeset [3159] by olle
Refs #725. Specimen tube registration without and with patient info …
9:01 AM Changeset [3158] by nicklas
References #455: Flagged RNA re-processing wizard Started with this …
8:36 AM Changeset [3157] by olle
Refs #725. Bug fixed in Javascript file persinfo.js in …

Mar 3, 2015:

7:31 AM Changeset [3156] by olle
Refs #725. Bug fixed in case registration with patient info when …

Feb 27, 2015:

10:38 AM Changeset [3155] by nicklas
References #740: Add support for reprocessing specimen Gray …
10:37 AM Ticket #744 (Lab protocol for RNAQC on BioAnalyzer) closed by nicklas
fixed: (In [3154]) Fixes #744: Lab protocol for RNAQC on BioAnalyzer?
10:37 AM Changeset [3154] by nicklas
Fixes #744: Lab protocol for RNAQC on BioAnalyzer?
8:04 AM Changeset [3153] by nicklas
References #740: Add support for reprocessing specimen Adjustments to …

Feb 26, 2015:

1:55 PM Ticket #745 (Incorrect QiaCube positions in DNA/RNA/FlowThrough registration wizard) closed by nicklas
fixed: (In [3152]) Fixes #745: Incorrect QiaCube? positions in …
1:55 PM Changeset [3152] by nicklas
Fixes #745: Incorrect QiaCube? positions in DNA/RNA/FlowThrough …
1:26 PM Changeset [3151] by nicklas
References #740: Add support for reprocessing specimen Some minor …
1:10 PM Changeset [3150] by nicklas
References #740: Add support for reprocessing specimen Registration …
10:59 AM Ticket #745 (Incorrect QiaCube positions in DNA/RNA/FlowThrough registration wizard) created by nicklas
The DNA/RNA/FlowThrough registration wizard only generate correct …
9:12 AM Changeset [3149] by nicklas
References #740: Add support for reprocessing specimen Loading new …
7:36 AM Changeset [3148] by olle
Refs #725. Case registration with and without patient info updated to …

Feb 25, 2015:

2:04 PM Changeset [3147] by nicklas
References #740: Add support for reprocessing specimen Comparing …
1:08 PM Changeset [3146] by nicklas
References #740: Add support for reprocessing specimen Label …
11:20 AM Changeset [3145] by nicklas
References #740: Add support for reprocessing specimen Started to …

Feb 24, 2015:

2:03 PM Changeset [3144] by nicklas
References #740: Add support for reprocessing specimen Adds counter …
12:48 PM Ticket #744 (Lab protocol for RNAQC on BioAnalyzer) created by nicklas
We need wizard for creating a lab protocol when running RNAQC on …
12:35 PM Ticket #741 (AutoProcessing flag remains set on raw bioassays) closed by nicklas
fixed: (In [3143]) Fixes #741: AutoProcessing? flag remains set on raw …
12:35 PM Changeset [3143] by nicklas
Fixes #741: AutoProcessing? flag remains set on raw bioassays The …
11:28 AM Ticket #739 (Gene report doesn't pick up default path to template.pdf) closed by nicklas
fixed: (In [3142]) Fixes #739: Gene report doesn't pick up default path to …
11:28 AM Changeset [3142] by nicklas
Fixes #739: Gene report doesn't pick up default path to template.pdf …
11:06 AM Ticket #743 (The second trimmomatic step in demux script may not include options) closed by nicklas
fixed: (In [3141]) Fixes #743: The second trimmomatic step in demux script …
11:06 AM Changeset [3141] by nicklas
Fixes #743: The second trimmomatic step in demux script may not …
11:06 AM Ticket #742 (Detect tiles with empty barcode files) closed by nicklas
fixed: (In [3140]) Fixes #742: Detect tiles with empty barcode files The …
11:06 AM Changeset [3140] by nicklas
Fixes #742: Detect tiles with empty barcode files The demux script …
10:55 AM Ticket #743 (The second trimmomatic step in demux script may not include options) created by nicklas
When generating the script for the second trimmomatic step the options …

Feb 23, 2015:

1:04 PM Ticket #742 (Detect tiles with empty barcode files) created by nicklas
The first step when demuxing is to call `picard …

Feb 20, 2015:

12:51 PM Ticket #741 (AutoProcessing flag remains set on raw bioassays) created by nicklas
The secondary analysis auto-confirmation wizard managed to process a …

Feb 19, 2015:

8:18 AM Ticket #740 (Add support for reprocessing specimen) created by nicklas
It should be possible to reprocess specimen items that has already …

Feb 18, 2015:

11:20 AM Ticket #739 (Gene report doesn't pick up default path to template.pdf) created by nicklas
In reggie-config.xml there is a setting for specifying the path to the …

Feb 16, 2015:

3:10 PM Changeset [3139] by olle
Refs #725. P Project focus updated with new option "GIST …

Feb 11, 2015:

2:45 PM Changeset [3138] by nicklas
References #738: Remove Cufflinks code from AlignJobCreator? Removing …
2:36 PM Ticket #738 (Remove Cufflinks code from AlignJobCreator) closed by nicklas
fixed: (In [3137]) Fixes #738: Remove Cufflinks code from AlignJobCreator?
2:36 PM Changeset [3137] by nicklas
Fixes #738: Remove Cufflinks code from AlignJobCreator?
2:36 PM Ticket #738 (Remove Cufflinks code from AlignJobCreator) created by nicklas
The class that is responsible for creating and handling alignment jobs …
8:06 AM Changeset [3136] by nicklas
Preparing for future release YubiKey 1.3
8:05 AM Milestone YubiKey v1.2 completed
See YubiKey authentication extension for …
8:04 AM PluginDownload edited by nicklas
Released YubiKey? 1.2 (diff)
8:03 AM net.sf.basedb.yubikey edited by nicklas
Released YubiKey? 1.2 (diff)
8:02 AM yubikey-1.2.tar.gz attached to net.sf.basedb.yubikey by nicklas
YubiKey? 1.2
8:01 AM Changeset [3135] by nicklas
Tagging YubiKey 1.2
8:01 AM Changeset [3134] by nicklas
Preparing to release YubiKey 1.2

Feb 10, 2015:

3:50 PM Ticket #729 (Check YubiKey password before user password) closed by nicklas
fixed: (In [3133]) Fixes #729: Check YubiKey? password before user password …
3:50 PM Changeset [3133] by nicklas
Fixes #729: Check YubiKey? password before user password Re-ordered …
11:37 AM net.sf.basedb.reggie/HistoryOfReggie edited by nicklas
Added Reggie 3.1 screenshot (diff)
11:37 AM reggie-3.1.png attached to net.sf.basedb.reggie/HistoryOfReggie by nicklas
Reggie 3.1
11:30 AM Changeset [3132] by nicklas
Preparing for future release Reggie 3.2
11:28 AM Milestone Reggie v3.1 completed
See Reggie extension page for more information.
11:28 AM PluginDownload edited by nicklas
Released Reggie 3.1 (diff)
11:27 AM net.sf.basedb.reggie edited by nicklas
Released Reggie 3.1 (diff)
11:26 AM reggie-3.1.tar.gz attached to net.sf.basedb.reggie by nicklas
Reggie 3.1
11:23 AM Changeset [3131] by nicklas
Tagging Reggie 3.1
11:23 AM Changeset [3130] by nicklas
Preparing to release Reggie 3.1
11:06 AM Ticket #629 (Use annotations on protocols in the demux and mask/align step to set ...) closed by nicklas
fixed
10:45 AM Ticket #736 (Some HE glass may be stained with something else than HE) closed by nicklas
fixed
10:44 AM Changeset [3129] by nicklas
References #629: Use annotations on protocols in the demux and …
10:10 AM Changeset [3128] by nicklas
References #629: Use annotations on protocols in the demux and …
8:48 AM Changeset [3127] by nicklas
Fixes #737: Show last update date+time for counters Moved the notice …
8:19 AM Changeset [3126] by nicklas
References #736: Some HE glass may be stained with something else than …

Feb 9, 2015:

2:46 PM Changeset [3125] by nicklas
References #736: Some HE glass may be stained with something else than …
12:33 PM Ticket #737 (Show last update date+time for counters) closed by nicklas
fixed: (In [3124]) Fixes #737: Show last update date+time for counters Added …
12:33 PM Changeset [3124] by nicklas
Fixes #737: Show last update date+time for counters Added a short …
11:36 AM Ticket #737 (Show last update date+time for counters) created by nicklas
The counters on the main page are no longer updated in real time (see …
9:26 AM Changeset [3123] by olle
Refs #725. Specimen tube registration updated in the set of mutation …

Feb 6, 2015:

3:22 PM Changeset [3122] by olle
Refs #725. MeLuDi updated to use BASE version "3.4.0" instead of …
3:02 PM Changeset [3121] by nicklas
References #736: Some HE glass may be stained with something else than …
2:48 PM Changeset [3120] by olle
Refs #725. Case summary updated further to ensure that titles fit on a …
1:42 PM Ticket #736 (Some HE glass may be stained with something else than HE) created by nicklas
The number of HE glass slides created are registered with the …
1:33 PM Ticket #735 (Can't modify number of slides created in the HE glass registration wizard) closed by nicklas
fixed: (In [3119]) Fixes #735: Can't modify number of slides created in the …
1:33 PM Changeset [3119] by nicklas
Fixes #735: Can't modify number of slides created in the HE glass …
1:17 PM Ticket #735 (Can't modify number of slides created in the HE glass registration wizard) created by nicklas
If the default value for HE glass slides (=2) is modified the wizard …
1:15 PM Changeset [3118] by nicklas
References #629: Use annotations on protocols in the demux and …
11:38 AM Changeset [3117] by nicklas
References #629: Use annotations on protocols in the demux and …
11:04 AM Changeset [3116] by nicklas
References #629: Use annotations on protocols in the demux and …
8:46 AM Changeset [3115] by nicklas
References #629: Use annotations on protocols in the demux and …

Feb 5, 2015:

1:21 PM Changeset [3114] by nicklas
References #629: Use annotations on protocols in the demux and …

Feb 4, 2015:

6:23 PM Changeset [3113] by jari
Make svndigest ignore branches directory structure
2:39 PM Ticket #730 (Set target molarity in "Create pooled libraries" wizard) closed by nicklas
fixed
11:06 AM Ticket #734 (The create new mRNA plate wizard should reset RNA marked for re-processing) closed by nicklas
fixed: (In [3112]) Fixes #734: The create new mRNA plate wizard should reset …
11:06 AM Changeset [3112] by nicklas
Fixes #734: The create new mRNA plate wizard should reset RNA marked …
10:36 AM Ticket #734 (The create new mRNA plate wizard should reset RNA marked for re-processing) created by nicklas
The auto-selection functionality contains an option for selecting RNA …
9:04 AM Ticket #731 (Installation wizard should enable AutoProcessing annotation for raw ...) closed by nicklas
fixed: (In [3111]) Fixes #731: Installation wizard should enable …
9:04 AM Changeset [3111] by nicklas
Fixes #731: Installation wizard should enable AutoProcessing?
9:00 AM Ticket #732 (Software item on aligned sequences is not set) closed by nicklas
fixed: (In [3110]) Fixes #732: Software item on aligned sequences is not set …
9:00 AM Changeset [3110] by nicklas
Fixes #732: Software item on aligned sequences is not set There was …
8:55 AM Ticket #733 (The create pools wizard create pools with roman numerals as name) closed by nicklas
fixed: (In [3109]) Fixes #733: The create pools wizard create pools with …
8:55 AM Changeset [3109] by nicklas
Fixes #733: The create pools wizard create pools with roman numerals …
Note: See TracTimeline for information about the timeline view.