Timeline



Feb 4, 2015:

6:23 PM Changeset [3113] by Jari Häkkinen
Make svndigest ignore branches directory structure
2:39 PM Ticket #730 (Set target molarity in "Create pooled libraries" wizard) closed by Nicklas Nordborg
fixed
11:06 AM Ticket #734 (The create new mRNA plate wizard should reset RNA marked for re-processing) closed by Nicklas Nordborg
fixed: (In [3112]) Fixes #734: The create new mRNA plate wizard should reset …
11:06 AM Changeset [3112] by Nicklas Nordborg
Fixes #734: The create new mRNA plate wizard should reset RNA marked …
10:36 AM Ticket #734 (The create new mRNA plate wizard should reset RNA marked for re-processing) created by Nicklas Nordborg
The auto-selection functionality contains an option for selecting RNA …
9:04 AM Ticket #731 (Installation wizard should enable AutoProcessing annotation for raw ...) closed by Nicklas Nordborg
fixed: (In [3111]) Fixes #731: Installation wizard should enable …
9:04 AM Changeset [3111] by Nicklas Nordborg
Fixes #731: Installation wizard should enable AutoProcessing
9:00 AM Ticket #732 (Software item on aligned sequences is not set) closed by Nicklas Nordborg
fixed: (In [3110]) Fixes #732: Software item on aligned sequences is not set …
9:00 AM Changeset [3110] by Nicklas Nordborg
Fixes #732: Software item on aligned sequences is not set There was …
8:55 AM Ticket #733 (The create pools wizard create pools with roman numerals as name) closed by Nicklas Nordborg
fixed: (In [3109]) Fixes #733: The create pools wizard create pools with …
8:55 AM Changeset [3109] by Nicklas Nordborg
Fixes #733: The create pools wizard create pools with roman numerals …
8:32 AM Ticket #733 (The create pools wizard create pools with roman numerals as name) updated by Nicklas Nordborg
I am not able to directly reproduce this, but there is a possible race …

Feb 3, 2015:

3:51 PM Ticket #733 (The create pools wizard create pools with roman numerals as name) updated by Nicklas Nordborg
Summary changed
3:51 PM Ticket #733 (The create pools wizard create pools with roman numerals as name) created by Nicklas Nordborg
The wizard display the names that should be used, but seems not to …
3:49 PM Ticket #732 (Software item on aligned sequences is not set) created by Nicklas Nordborg
The selected software item in the 'Start masking and alignment' wizard …

Feb 2, 2015:

11:15 AM Ticket #731 (Installation wizard should enable AutoProcessing annotation for raw ...) created by Nicklas Nordborg
Trying to start a new cufflinks job with the "Auto-confirm" option in …

Jan 28, 2015:

12:51 PM PluginDownload edited by Nicklas Nordborg
Released Print package 1.2 (diff)

Jan 27, 2015:

1:16 PM Ticket #730 (Set target molarity in "Create pooled libraries" wizard) updated by Nicklas Nordborg
(In [3108]) References #730: Set target molarity in "Create pooled …
1:16 PM Changeset [3108] by Nicklas Nordborg
References #730: Set target molarity in "Create pooled libraries" …
8:39 AM Ticket #730 (Set target molarity in "Create pooled libraries" wizard) updated by Nicklas Nordborg
(In [3107]) References #730: Set target molarity in "Create pooled …
8:39 AM Changeset [3107] by Nicklas Nordborg
References #730: Set target molarity in "Create pooled libraries" …
7:53 AM Ticket #730 (Set target molarity in "Create pooled libraries" wizard) updated by Nicklas Nordborg
Status changed

Jan 26, 2015:

2:53 PM Ticket #730 (Set target molarity in "Create pooled libraries" wizard) created by Nicklas Nordborg
In the current wizard, the target molarity is fixed at 2nM. This was …
1:42 PM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by olle
(In [3106]) Refs #725. Bug not allowing null values for the …
1:42 PM Changeset [3106] by olle
Refs #725. Bug not allowing null values for the estimated part of …

Jan 23, 2015:

11:01 AM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by olle
(In [3105]) Refs #725. Sample and extract registration wizards updated …
11:01 AM Changeset [3105] by olle
Refs #725. Sample and extract registration wizards updated to support …
9:44 AM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by olle
(In [3104]) Refs #725. Bug fixed in wizard for registering a new case …
9:44 AM Changeset [3104] by olle
Refs #725. Bug fixed in wizard for registering a new case without …
9:40 AM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by olle
Bug to be fixed: * The wizard for registering a new case without …

Jan 22, 2015:

8:58 AM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by olle
(In [3103]) Refs #725. MeLuDi updated to display a counter value next …
8:58 AM Changeset [3103] by olle
Refs #725. MeLuDi updated to display a counter value next to the …
8:53 AM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by olle
Functional specification update: * MeLuDi should be updated to …

Jan 21, 2015:

3:49 PM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by olle
(In [3102]) Refs #725. MeLuDi updated in servlets to not use full …
3:49 PM Changeset [3102] by olle
Refs #725. MeLuDi updated in servlets to not use full class name …
3:38 PM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by olle
(In [3101]) Refs #725. MeLuDi updated in servlets managing items to …
3:37 PM Changeset [3101] by olle
Refs #725. MeLuDi updated in servlets managing items to call …
2:14 PM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by olle
(In [3100]) Refs #725. MeLuDi updated with a Counter service of the …
2:14 PM Changeset [3100] by olle
Refs #725. MeLuDi updated with a Counter service of the same type as …
2:13 PM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by olle
Functional specification update: * MeLuDi should be updated with a …
8:01 AM Ticket #729 (Check YubiKey password before user password) created by Nicklas Nordborg
The current implementation we first check if the regular user password …

Jan 20, 2015:

9:00 AM Changeset [3099] by Nicklas Nordborg
Updating Picard wrapper script to make it compatible with Picard 1.128 …

Jan 19, 2015:

3:01 PM reggie-3.0.png attached to net.sf.basedb.reggie/HistoryOfReggie by Nicklas Nordborg
Reggie 3.0
3:00 PM net.sf.basedb.reggie/HistoryOfReggie edited by Nicklas Nordborg
(diff)
2:56 PM PluginDownload edited by Nicklas Nordborg
Released Reggie 3.0 (diff)
2:54 PM Changeset [3098] by Nicklas Nordborg
Preparing for future release Reggie 3.1
2:52 PM Milestone Reggie v3.0 completed
Improvements towards streamlining secondary analysis. See …
2:51 PM Ticket #723 (Retraction wizard - Step 2: Follow up) closed by Nicklas Nordborg
fixed
2:51 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 3.0 (diff)
2:50 PM reggie-3.0.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 3.0
2:47 PM Changeset [3097] by Nicklas Nordborg
Tagging Reggie 3.0
2:47 PM Changeset [3096] by Nicklas Nordborg
Preparing to release Reggie 3.0
2:44 PM Changeset [3095] by Nicklas Nordborg
Removing debug code.
2:34 PM Changeset [3094] by Nicklas Nordborg
Fixing typo.
2:16 PM Changeset [3093] by Nicklas Nordborg
Removing unused code.
2:11 PM Changeset [3092] by Nicklas Nordborg
Removing unused code.

Jan 15, 2015:

2:41 PM Ticket #723 (Retraction wizard - Step 2: Follow up) updated by olle
(In [3091]) Refs #723. Retraction follow-up wizard updated by using …
2:41 PM Changeset [3091] by olle
Refs #723. Retraction follow-up wizard updated by using shorter names …
2:15 PM Ticket #723 (Retraction wizard - Step 2: Follow up) updated by olle
(In [3090]) Refs #723. Retraction follow-up wizard updated by using …
2:15 PM Changeset [3090] by olle
Refs #723. Retraction follow-up wizard updated by using Javascript …
1:52 PM Ticket #723 (Retraction wizard - Step 2: Follow up) updated by olle
(In [3089]) Refs #723. Retraction follow-up wizard updated to disable …
1:52 PM Changeset [3089] by olle
Refs #723. Retraction follow-up wizard updated to disable step 1 part …
11:46 AM Ticket #723 (Retraction wizard - Step 2: Follow up) updated by olle
(In [3088]) Refs #723. Retraction follow-up wizard updated to disable …
11:46 AM Changeset [3088] by olle
Refs #723. Retraction follow-up wizard updated to disable step 1 part …
10:47 AM Ticket #723 (Retraction wizard - Step 2: Follow up) updated by olle
(In [3087]) Refs #723. Retraction follow-up wizard updated by removal …
10:47 AM Changeset [3087] by olle
Refs #723. Retraction follow-up wizard updated by removal of CSS file …
9:53 AM Ticket #723 (Retraction wizard - Step 2: Follow up) updated by olle
(In [3086]) Refs #723. Retraction follow-up wizard updated to use own …
9:53 AM Changeset [3086] by olle
Refs #723. Retraction follow-up wizard updated to use own CSS file, in …
8:39 AM Ticket #723 (Retraction wizard - Step 2: Follow up) updated by olle
(In [3085]) Refs #723. First version of second step of the retraction …
8:39 AM Changeset [3085] by olle
Refs #723. First version of second step of the retraction wizard, …
8:35 AM Changeset [3084] by Nicklas Nordborg
Preparing for future release Print package 1.3
8:34 AM Milestone Print package v1.2 completed
See Print package extension page for more …
8:34 AM net.sf.basedb.print edited by Nicklas Nordborg
Released Print package 1.2 (diff)
8:32 AM base-print-1.2.tar.gz attached to net.sf.basedb.print by Nicklas Nordborg
Print package 1.2
8:32 AM Changeset [3083] by Nicklas Nordborg
Tagging Print package 1.2
8:32 AM Changeset [3082] by Nicklas Nordborg
Preparing to release Print package 1.2.
8:30 AM Ticket #728 (Get rid of SQLite) created by Nicklas Nordborg
In #706 we moved the labenv database from SQLite into the BASE …
8:27 AM PluginDownload edited by Nicklas Nordborg
Released Labenv 1.3 (diff)
8:26 AM PluginDownload edited by Nicklas Nordborg
Released example code 1.7 (diff)
8:25 AM Changeset [3081] by Nicklas Nordborg
Preparing for future release of labenv 1.4
8:25 AM Milestone LabEnv v1.3 completed
Further update of the LabEnv extension to BASE, a package allowing …
8:24 AM net.sf.basedb.labenv edited by Nicklas Nordborg
Released Labenv 1.3 (diff)
8:19 AM labenv-1.3.tar.gz attached to net.sf.basedb.labenv by Nicklas Nordborg
Labenv 1.3
8:18 AM Changeset [3080] by Nicklas Nordborg
Tagging Labenv 1.3
8:18 AM Changeset [3079] by Nicklas Nordborg
Preparing to release Labenv 1.3
8:13 AM Ticket #706 (Update LabEnv to use BASE database capabilties instead of SQLite) closed by Nicklas Nordborg
fixed: Have tested this for some time now and it seems to be ok.
8:08 AM Changeset [3078] by Nicklas Nordborg
Preparing for future release example code 1.8
8:06 AM Milestone Example code v1.7 completed
For more information see [wiki:net.sf.basedb.examplecode Example code …
8:05 AM net.sf.basedb.examplecode edited by Nicklas Nordborg
Released example code 1.7 (diff)
8:04 AM Changeset [3077] by Nicklas Nordborg
Tagging example code 1.7
8:03 AM base-examples-1.7.tar.gz attached to net.sf.basedb.examplecode by Nicklas Nordborg
Example code 1.7
8:03 AM Changeset [3076] by Nicklas Nordborg
Preparing to release Example code 1.7

Jan 14, 2015:

4:44 PM Ticket #723 (Retraction wizard - Step 2: Follow up) updated by olle
Design specification for the retraction follow-up step: 1. JSP file …
2:37 PM Changeset [3075] by Nicklas Nordborg
Preparing for future release Skin collection 1.2
2:36 PM Milestone Skin-collection 1.1 completed
See Skin collection extension page
2:35 PM PluginDownload edited by Nicklas Nordborg
Released skin collection 1.1 (diff)
2:35 PM net.sf.basedb.skincollection edited by Nicklas Nordborg
Released skin collection 1.1 (diff)
2:33 PM skin-collection-1.1.tar.gz attached to net.sf.basedb.skincollection by Nicklas Nordborg
Skin collection 1.1
2:33 PM Changeset [3074] by Nicklas Nordborg
Tagging skin collection 1.1.
2:32 PM Changeset [3073] by Nicklas Nordborg
Preparing to release skin collection 1.1.

Jan 13, 2015:

3:43 PM Ticket #717 (Auto-confirmation service) updated by Nicklas Nordborg
(In [3072]) References #717: Auto-confirmation service Added a …
3:43 PM Changeset [3072] by Nicklas Nordborg
References #717: Auto-confirmation service Added a comment to …

Jan 12, 2015:

2:47 PM Ticket #717 (Auto-confirmation service) closed by Nicklas Nordborg
fixed
11:31 AM Ticket #726 (Improve performance of counter on index page) closed by Nicklas Nordborg
fixed
11:30 AM Ticket #702 (Use skin features in BASE 3.4) closed by Nicklas Nordborg
fixed
10:53 AM Ticket #717 (Auto-confirmation service) updated by Nicklas Nordborg
(In [3071]) References #717: Auto-confirmation service Store priority …
10:53 AM Changeset [3071] by Nicklas Nordborg
References #717: Auto-confirmation service Store priority and …

Jan 9, 2015:

11:23 AM Ticket #717 (Auto-confirmation service) updated by Nicklas Nordborg
(In [3070]) References #717: Auto-confirmation service Implemented …
11:23 AM Changeset [3070] by Nicklas Nordborg
References #717: Auto-confirmation service Implemented …
8:24 AM Ticket #717 (Auto-confirmation service) updated by Nicklas Nordborg
(In [3069]) References #717: Auto-confirmation service Implemented …
8:24 AM Changeset [3069] by Nicklas Nordborg
References #717: Auto-confirmation service Implemented …

Jan 8, 2015:

10:53 AM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by olle
(In [3068]) Refs #725. JSP file case_summary.jsp in …
10:53 AM Changeset [3068] by olle
Refs #725. JSP file case_summary.jsp in resources/reports/ updated …
10:33 AM Ticket #725 (MeLuDi v.1.1 bug fixes and improvements) updated by olle
(In [3067]) Refs #725. Specimen tube registration updated to include …
10:33 AM Changeset [3067] by olle
Refs #725. Specimen tube registration updated to include an input …

Jan 7, 2015:

11:33 AM Changeset [3066] by Nicklas Nordborg
Merge Reggie 2.18.2 to trunk.
11:32 AM Changeset [3065] by Nicklas Nordborg
Preparing for future release of Reggie 2.18.3
11:29 AM Milestone Reggie v2.18.2 completed
Bug fixes for Reggie 2.18.1. See [wiki:net.sf.basedb.reggie Reggie …
11:29 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 2.18.2 (diff)
11:28 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 2.18.2 (diff)
11:27 AM reggie-2.18.2.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 2.18.2
11:25 AM Changeset [3064] by Nicklas Nordborg
Tagging Reggie 2.18.2
11:25 AM Changeset [3063] by Nicklas Nordborg
Preparing to release Reggie 2.18.2
11:22 AM Ticket #727 (RNAQC importer says "No 'RNA Quality Score' value found....; using ...) updated by Nicklas Nordborg
(In [3062]) References #727: RNAQC importer says "No 'RNA Quality …
11:22 AM Changeset [3062] by Nicklas Nordborg
References #727: RNAQC importer says "No 'RNA Quality Score' value …
11:16 AM Ticket #727 (RNAQC importer says "No 'RNA Quality Score' value found....; using ...) closed by Nicklas Nordborg
fixed: (In [3061]) Fixes #727: RNAQC importer says "No 'RNA Quality Score' …
11:16 AM Changeset [3061] by Nicklas Nordborg
Fixes #727: RNAQC importer says "No 'RNA Quality Score' value …
11:09 AM Ticket #727 (RNAQC importer says "No 'RNA Quality Score' value found....; using ...) updated by Nicklas Nordborg
I think I found the cause of this. The background is that #669
10:55 AM no_rqs.png attached to Ticket #727 by Nicklas Nordborg
10:54 AM Ticket #727 (RNAQC importer says "No 'RNA Quality Score' value found....; using ...) created by Nicklas Nordborg
The 'Import RQS scores from Caliper well table file' wizard seems to …
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