Timeline



Dec 17, 2014:

2:32 PM Ticket #723 (Retraction wizard - Step 2: Follow up) updated by olle
Traceability note: * The retraction wizard was introduced in Ticket …
2:30 PM Ticket #723 (Retraction wizard - Step 2: Follow up) updated by olle
Status changed
Ticket accepted.
2:30 PM Ticket #723 (Retraction wizard - Step 2: Follow up) created by olle
The first step of the retraction wizard was concerned with marking …
1:31 PM Tickets #717,​722 batch updated by Nicklas Nordborg
fixed: (In [3051]) Fixes #722 and references #717. Thanks to the new …
1:31 PM Changeset [3051] by Nicklas Nordborg
Fixes #722 and references #717. Thanks to the new auto-confirmation …
1:08 PM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
(In [3050]) Refs #718. MeLuDi updated by removal of annotation types …
1:08 PM Changeset [3050] by olle
Refs #718. MeLuDi updated by removal of annotation types …
12:56 PM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
Design update: * Annotation type AnnotationType.FLAG should be …
12:32 PM Ticket #717 (Auto-confirmation service) updated by Nicklas Nordborg
(In [3049]) References #717: Auto-confirmation service Implemented …
12:32 PM Changeset [3049] by Nicklas Nordborg
References #717: Auto-confirmation service Implemented the next step …
9:54 AM Ticket #722 (The count for Gene report wizard doesn't decrease after starting gene ...) updated by Nicklas Nordborg
(In [3048]) References #722: The count for Gene report wizard doesn't …
9:54 AM Changeset [3048] by Nicklas Nordborg
References #722: The count for Gene report wizard doesn't decrease …
9:31 AM Ticket #722 (The count for Gene report wizard doesn't decrease after starting gene ...) created by Nicklas Nordborg
The counter checks the number of raw bioassays that doesn't have a …

Dec 16, 2014:

3:40 PM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
(In [3047]) Refs #718. Java servlet classes/files …
3:40 PM Changeset [3047] by olle
Refs #718. Java servlet classes/files CaseSummaryServlet.java, …
2:46 PM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
(In [3046]) Refs #718. Java class/file ReportTableUtil.java and Java …
2:46 PM Changeset [3046] by olle
Refs #718. Java class/file ReportTableUtil.java and Java servlet …
2:15 PM Ticket #721 (Item not found: BioMaterialList[id=0] when trying to download HE glass ...) updated by Nicklas Nordborg
Seems like this was broken in [2970] which modified the code for …
2:04 PM Ticket #721 (Item not found: BioMaterialList[id=0] when trying to download HE glass ...) created by Nicklas Nordborg
The "Lab tracking protocol for FFPE/HE" wizard fails when using the …
11:36 AM Ticket #720 (Change major Reggie version to 3) closed by Nicklas Nordborg
fixed: (In [3045]) Fixes #720: Change major Reggie version to 3
11:36 AM Changeset [3045] by Nicklas Nordborg
Fixes #720: Change major Reggie version to 3
11:33 AM Ticket #720 (Change major Reggie version to 3) created by Nicklas Nordborg
It was decided that the next Reggie version will be Reggie 3.0 instead …
8:44 AM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
(In [3044]) Refs #718. Currently unused subtype items have been …
8:44 AM Changeset [3044] by olle
Refs #718. Currently unused subtype items have been removed or …
8:23 AM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
(In [3043]) Refs #718. Java class/file SpecimenTubeServlet.java in …
8:23 AM Changeset [3043] by olle
Refs #718. Java class/file SpecimenTubeServlet.java in …
8:14 AM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
(In [3042]) Refs #718. MeLuDi updated to allow gaps in the pattern of …
8:14 AM Changeset [3042] by olle
Refs #718. MeLuDi updated to allow gaps in the pattern of used wells …
8:12 AM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
Design update to allow gaps in the pattern of used wells in a bioplate …
7:57 AM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
Functional specification update: * When searching for a free well …

Dec 15, 2014:

12:50 PM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
(In [3041]) Refs #718. Case summary input field hint and notification …
12:50 PM Changeset [3041] by olle
Refs #718. Case summary input field hint and notification message …
8:59 AM Ticket #717 (Auto-confirmation service) updated by Nicklas Nordborg
Status changed
8:37 AM Changeset [3040] by Nicklas Nordborg
Merge Reggie 2.18.1 to the trunk.
8:30 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 2.18.1 (diff)
8:29 AM Changeset [3039] by Nicklas Nordborg
Preparing for future release Reggie 2.18.2
8:27 AM Milestone Reggie v2.18.1 completed
Bug fixes for Reggie 2.18. See [wiki:net.sf.basedb.reggie Reggie …
8:26 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 2.18.1 (diff)
8:25 AM reggie-2.18.1.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 2.18.1
8:23 AM Changeset [3038] by Nicklas Nordborg
Tagging Reggie 2.18.1
8:23 AM Changeset [3037] by Nicklas Nordborg
Preparing to release Reggie 2.18.1
8:20 AM Ticket #719 (NullPointerException in extraction registration wizard) closed by Nicklas Nordborg
fixed: (In [3036]) Fixes #719: NullPointerException in extraction …
8:20 AM Changeset [3036] by Nicklas Nordborg
Fixes #719: NullPointerException in extraction registration wizard
8:19 AM npe.jpg attached to Ticket #719 by Nicklas Nordborg
8:17 AM Ticket #719 (NullPointerException in extraction registration wizard) created by Nicklas Nordborg
When the "PreNormalize" option is NOT selected. See image. The only …

Dec 12, 2014:

3:38 PM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
(In [3035]) Refs #718. Outermost Ant build file build.xml in /
3:38 PM Changeset [3035] by olle
Refs #718. Outermost Ant build file build.xml in / updated by …
3:31 PM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
Traceability note: * MeLuDi v.1.0 was introduced in Ticket #690
3:30 PM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) updated by olle
Status changed
Ticket accepted.
3:29 PM Ticket #718 (MeLuDi v.1.0 bug fixes and improvements) created by olle
This ticket covers bug fixes and improvements to MeLuDi v.1.0.
2:55 PM Ticket #717 (Auto-confirmation service) updated by Nicklas Nordborg
(In [3034]) References #717: Auto-confirmation service Stared to …
2:54 PM Changeset [3034] by Nicklas Nordborg
References #717: Auto-confirmation service Stared to implement actual …
12:44 PM Ticket #717 (Auto-confirmation service) updated by Nicklas Nordborg
(In [3033]) References #717: Auto-confirmation service Refactor …
12:44 PM Changeset [3033] by Nicklas Nordborg
References #717: Auto-confirmation service Refactor session control …
10:41 AM Ticket #717 (Auto-confirmation service) updated by Nicklas Nordborg
(In [3032]) References #717: Auto-confirmation service Added …
10:41 AM Changeset [3032] by Nicklas Nordborg
References #717: Auto-confirmation service Added AutoConfirmService
7:54 AM Milestone MeLuDi v1.0 completed
The first release of the MeLuDi extension to BASE, a package of …
7:48 AM PluginDownload edited by olle
Added information on MeLuDi 1.0 (diff)
7:32 AM Changeset [3031] by olle
Tagging release MeLuDi 1.0

Dec 11, 2014:

4:48 PM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) closed by olle
fixed: Ticket closed as MeLuDi version 1.0 has been created.
4:34 PM net.sf.basedb.meludi edited by olle
MeLuDi BASE extension version 1.0 (diff)
4:24 PM meludi-1.0.tar.gz attached to net.sf.basedb.meludi by olle
MeLuDi BASE extension package version 1.0
4:00 PM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
(In [3030]) Refs #690. Javascript file labelgeneration.js in …
4:00 PM Changeset [3030] by olle
Refs #690. Javascript file labelgeneration.js in …
3:43 PM Ticket #717 (Auto-confirmation service) updated by Nicklas Nordborg
(In [3029]) References #717: Auto-confirmation service Added …
3:43 PM Changeset [3029] by Nicklas Nordborg
References #717: Auto-confirmation service Added "Auto-confirm" …
3:04 PM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
(In [3028]) Refs #690. MeLuDi BASE extension updated to version 1.0: …
3:04 PM Changeset [3028] by olle
Refs #690. MeLuDi BASE extension updated to version 1.0: A. New and …
3:01 PM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
Design update: A. New and changed reference items. 1. New annotation …
1:53 PM Ticket #717 (Auto-confirmation service) created by Nicklas Nordborg
For the secondary analysis we should implement an auto-confirmation …
1:39 PM Ticket #716 (Add support for Reggie to the gold skin) closed by Nicklas Nordborg
fixed: (In [3027]) Fixes #716: Add support for Reggie to the gold skin The …
1:39 PM Changeset [3027] by Nicklas Nordborg
Fixes #716: Add support for Reggie to the gold skin The major visible …
1:36 PM Ticket #716 (Add support for Reggie to the gold skin) created by Nicklas Nordborg
Most parts of Reggie use classes, etc. defined in BASE, there are a …
1:34 PM Ticket #702 (Use skin features in BASE 3.4) updated by Nicklas Nordborg
(In [3026]) References #702: Use skin features in BASE 3.4 Turned out …
1:34 PM Changeset [3026] by Nicklas Nordborg
References #702: Use skin features in BASE 3.4 Turned out that color …
1:30 PM Ticket #702 (Use skin features in BASE 3.4) updated by Nicklas Nordborg
Status changed

Dec 9, 2014:

3:08 PM Ticket #711 (The 'Confirm sequencing completed' wizard should not set ...) closed by Nicklas Nordborg
fixed: (In [3025]) Fixes #711: The 'Confirm sequencing completed' wizard …
3:08 PM Changeset [3025] by Nicklas Nordborg
Fixes #711: The 'Confirm sequencing completed' wizard should not set …
2:58 PM Ticket #710 (Flow cells can be counted multiple times for 'Register sequencing started') closed by Nicklas Nordborg
fixed: (In [3024]) Fixes #710: Flow cells can be counted multiple times for …
2:58 PM Changeset [3024] by Nicklas Nordborg
Fixes #710: Flow cells can be counted multiple times for 'Register …
2:43 PM Ticket #713 (Comment for bioplate in RNA dilution registration is not updated) closed by Nicklas Nordborg
fixed: (In [3023]) Fixes #713: Comment for bioplate in RNA dilution …
2:43 PM Changeset [3023] by Nicklas Nordborg
Fixes #713: Comment for bioplate in RNA dilution registration is not …
11:43 AM Ticket #706 (Update LabEnv to use BASE database capabilties instead of SQLite) updated by Nicklas Nordborg
(In [3022]) References #706: Update LabEnv to use BASE database …
11:42 AM Changeset [3022] by Nicklas Nordborg
References #706: Update LabEnv to use BASE database capabilties …
10:17 AM Ticket #706 (Update LabEnv to use BASE database capabilties instead of SQLite) updated by Nicklas Nordborg
(In [3021]) References #706: Update LabEnv to use BASE database …
10:17 AM Changeset [3021] by Nicklas Nordborg
References #706: Update LabEnv to use BASE database capabilties …
8:40 AM Ticket #715 (Do not query the sensor for it's name every time) closed by Nicklas Nordborg
fixed: (In [3020]) Fixes #715: Do not query the sensor for it's name every time
8:40 AM Changeset [3020] by Nicklas Nordborg
Fixes #715: Do not query the sensor for it's name every time
8:40 AM Ticket #715 (Do not query the sensor for it's name every time) created by Nicklas Nordborg
Every time a sensor is queried for the current temperature and …
8:29 AM Ticket #714 (Get rid of warning messages from HttpMethodBase) closed by Nicklas Nordborg
fixed: (In [3019]) Fixes #714: Get rid of warning messages from …
8:29 AM Changeset [3019] by Nicklas Nordborg
Fixes #714: Get rid of warning messages from HttpMethodBase Reading …
7:54 AM Ticket #714 (Get rid of warning messages from HttpMethodBase) updated by Nicklas Nordborg
Description changed
7:53 AM Ticket #714 (Get rid of warning messages from HttpMethodBase) created by Nicklas Nordborg
Every time a request is made to one of the sensors a warning message …
7:44 AM Ticket #706 (Update LabEnv to use BASE database capabilties instead of SQLite) updated by Nicklas Nordborg
(In [3018]) References #706: Update LabEnv to use BASE database …
7:44 AM Changeset [3018] by Nicklas Nordborg
References #706: Update LabEnv to use BASE database capabilties …

Dec 8, 2014:

1:46 PM Ticket #706 (Update LabEnv to use BASE database capabilties instead of SQLite) updated by Nicklas Nordborg
(In [3017]) References #706: Update LabEnv to use BASE database …
1:46 PM Changeset [3017] by Nicklas Nordborg
References #706: Update LabEnv to use BASE database capabilties …
1:35 PM Ticket #608 (Update Labenv to new scripting pattern) closed by olle
fixed: Ticket closed as the requested modifications have been added. If …
8:00 AM Ticket #713 (Comment for bioplate in RNA dilution registration is not updated) updated by Nicklas Nordborg
Milestone changed
8:00 AM Ticket #711 (The 'Confirm sequencing completed' wizard should not set ...) updated by Nicklas Nordborg
Milestone changed
7:59 AM Ticket #710 (Flow cells can be counted multiple times for 'Register sequencing started') updated by Nicklas Nordborg
Milestone changed
7:58 AM Changeset [3016] by Nicklas Nordborg
Preparing bugfix branch for Reggie 2.18
7:56 AM Changeset [3015] by Nicklas Nordborg
Creating bugfix branch for Reggie 2.18
7:52 AM Ticket #713 (Comment for bioplate in RNA dilution registration is not updated) created by Nicklas Nordborg
When starting the wizard, the bioplate comment is set to the …

Dec 5, 2014:

1:10 PM Ticket #706 (Update LabEnv to use BASE database capabilties instead of SQLite) updated by Nicklas Nordborg
(In [3014]) References #706: Update LabEnv to use BASE database …
1:10 PM Changeset [3014] by Nicklas Nordborg
References #706: Update LabEnv to use BASE database capabilties …
12:31 PM Ticket #606 (Switch to JDOM 2) closed by Nicklas Nordborg
fixed
12:31 PM Ticket #706 (Update LabEnv to use BASE database capabilties instead of SQLite) updated by Nicklas Nordborg
Status, Owner, Milestone changed
12:31 PM Ticket #606 (Switch to JDOM 2) updated by Nicklas Nordborg
(In [3013]) References #606: Switch to JDOM 2 New JDOM 2.0.5 replaces …
12:31 PM Changeset [3013] by Nicklas Nordborg
References #606: Switch to JDOM 2 New JDOM 2.0.5 replaces 1.1.3. Also …
11:50 AM Ticket #606 (Switch to JDOM 2) updated by Nicklas Nordborg
(In [3012]) References #606: Switch to JDOM 2 Switched to depend on …
11:50 AM Changeset [3012] by Nicklas Nordborg
References #606: Switch to JDOM 2 Switched to depend on BASE 3.4
11:48 AM Ticket #608 (Update Labenv to new scripting pattern) updated by Nicklas Nordborg
(In [3011]) References #608: Update Labenv to new scripting pattern …
11:48 AM Changeset [3011] by Nicklas Nordborg
References #608: Update Labenv to new scripting pattern The "LabEnv" …
11:39 AM Ticket #606 (Switch to JDOM 2) updated by Nicklas Nordborg
Status, Owner, Milestone changed
11:06 AM Ticket #712 (The 'Skin options' menu is only visible for root user) closed by Nicklas Nordborg
fixed: (In [3010]) Fixes #712: The 'Skin options' menu is only visible for …
11:06 AM Changeset [3010] by Nicklas Nordborg
Fixes #712: The 'Skin options' menu is only visible for root user
11:06 AM Ticket #712 (The 'Skin options' menu is only visible for root user) created by Nicklas Nordborg
The menu item is configured to be visible for users with WRITE …

Dec 4, 2014:

2:04 PM Ticket #711 (The 'Confirm sequencing completed' wizard should not set ...) updated by Nicklas Nordborg
Summary changed
2:04 PM Ticket #711 (The 'Confirm sequencing completed' wizard should not set ...) created by Nicklas Nordborg
This flag may already be present from the previous (Register …
1:59 PM Ticket #710 (Flow cells can be counted multiple times for 'Register sequencing started') created by Nicklas Nordborg
The counter next to the 'Register sequencing started' wizard can count …
12:41 PM Ticket #605 (Switch to JDOM 2) closed by Nicklas Nordborg
fixed: (In [3009]) Fixes #605: Switch to JDOM 2
12:41 PM Changeset [3009] by Nicklas Nordborg
Fixes #605: Switch to JDOM 2
11:02 AM Ticket #709 (Depend on BASE 3.4) closed by Nicklas Nordborg
fixed: (In [3008]) Fixes #709: Depend on BASE 3.4 Updated to BASE version …
11:02 AM Changeset [3008] by Nicklas Nordborg
Fixes #709: Depend on BASE 3.4 Updated to BASE version 3.4.0. Removed …
10:57 AM Ticket #605 (Switch to JDOM 2) updated by Nicklas Nordborg
Status changed
10:57 AM Ticket #709 (Depend on BASE 3.4) updated by Nicklas Nordborg
Status changed
10:56 AM Ticket #702 (Use skin features in BASE 3.4) updated by Nicklas Nordborg
Description, Milestone changed
10:55 AM Ticket #709 (Depend on BASE 3.4) created by Nicklas Nordborg
Time to move on to the upcoming BASE version. Also means that we can …
10:54 AM Ticket #605 (Switch to JDOM 2) updated by Nicklas Nordborg
Milestone changed
10:32 AM PluginDownload edited by Nicklas Nordborg
Released skin collection 1.0 (diff)
10:23 AM Milestone Skin-collection 1.0 completed
See Skin collection extension page
10:02 AM Changeset [3007] by Nicklas Nordborg
Preparing for future release Skin collection 1.1
10:00 AM net.sf.basedb.skincollection edited by Nicklas Nordborg
Released skin collection 1.0 (diff)
9:56 AM skin-collection-1.0.tar.gz attached to net.sf.basedb.skincollection by Nicklas Nordborg
Skin collection 1.0
9:55 AM Changeset [3006] by Nicklas Nordborg
Tagging skin collection 1.0.
9:54 AM Changeset [3005] by Nicklas Nordborg
Preparing to release skin collection 1.0
9:15 AM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
Updated input options via check boxes/menus: || Input name || …
9:08 AM Changeset [3004] by Nicklas Nordborg
Preparing for future release Reggie 2.19
9:06 AM net.sf.basedb.reggie/HistoryOfReggie edited by Nicklas Nordborg
Added Reggie 2.18 screenshot (diff)
9:06 AM reggie-2.18.png attached to net.sf.basedb.reggie/HistoryOfReggie by Nicklas Nordborg
Reggie 2.18
8:58 AM Milestone Reggie v2.18 completed
Improvements towards streamlining lab work for "real-time" sample …
8:57 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 2.18 (diff)
8:57 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 2.18 (diff)
8:54 AM reggie-2.18.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 2.18
8:54 AM Ticket #674 (Generate document with report of sequencing results) closed by Nicklas Nordborg
fixed
8:53 AM Changeset [3003] by Nicklas Nordborg
Tagging Reggie 2.18
8:52 AM Ticket #674 (Generate document with report of sequencing results) updated by Nicklas Nordborg
(In [3002]) References #674: Generate document with report of …
8:52 AM Changeset [3002] by Nicklas Nordborg
References #674: Generate document with report of sequencing results …
8:17 AM Changeset [3001] by Nicklas Nordborg
Preparing to release Reggie 2.18
8:13 AM Milestone Reggie v2.17.3 completed
Bug fixes for Reggie 2.17.2. See [wiki:net.sf.basedb.reggie Reggie …
8:12 AM Changeset [3000] by Nicklas Nordborg
Merge unreleased changes on 2.17-stable (#700) to trunk.

Dec 3, 2014:

4:38 PM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
Background information update: 1. If tube content is …
1:34 PM Ticket #674 (Generate document with report of sequencing results) updated by Nicklas Nordborg
(In [2999]) References #674: Generate document with report of …
1:34 PM Changeset [2999] by Nicklas Nordborg
References #674: Generate document with report of sequencing results …
1:27 PM Ticket #674 (Generate document with report of sequencing results) updated by Nicklas Nordborg
(In [2998]) References #674: Generate document with report of …
1:27 PM Changeset [2998] by Nicklas Nordborg
References #674: Generate document with report of sequencing results …
1:10 PM Ticket #674 (Generate document with report of sequencing results) updated by Nicklas Nordborg
(In [2997]) References #674: Generate document with report of …
1:10 PM Changeset [2997] by Nicklas Nordborg
References #674: Generate document with report of sequencing results …
1:08 PM Changeset [2996] by Nicklas Nordborg
Revert [2995] since it was missing a commit message.
1:05 PM Changeset [2995] by Nicklas Nordborg
8:16 AM Ticket #608 (Update Labenv to new scripting pattern) updated by olle
(In [2994]) Refs #608. LabEnv updated to new scripting pattern: 1. …
8:16 AM Changeset [2994] by olle
Refs #608. LabEnv updated to new scripting pattern: 1. XML …
8:14 AM Ticket #674 (Generate document with report of sequencing results) updated by Nicklas Nordborg
(In [2993]) References #674: Generate document with report of …
8:14 AM Changeset [2993] by Nicklas Nordborg
References #674: Generate document with report of sequencing results …
7:57 AM Ticket #608 (Update Labenv to new scripting pattern) updated by olle
(In [2992]) Refs #608. LabEnv updated to new scripting pattern: 1. …
7:57 AM Changeset [2992] by olle
Refs #608. LabEnv updated to new scripting pattern: 1. XML …

Dec 2, 2014:

2:08 PM Ticket #674 (Generate document with report of sequencing results) updated by Nicklas Nordborg
(In [2991]) References #674: Generate document with report of …
2:08 PM Changeset [2991] by Nicklas Nordborg
References #674: Generate document with report of sequencing results …
12:49 PM Ticket #674 (Generate document with report of sequencing results) updated by Nicklas Nordborg
(In [2990]) References #674: Generate document with report of …
12:49 PM Changeset [2990] by Nicklas Nordborg
References #674: Generate document with report of sequencing results …
12:17 PM Ticket #608 (Update Labenv to new scripting pattern) updated by olle
(In [2989]) Refs #608. LabEnv updated to new scripting pattern: 1. …
12:16 PM Changeset [2989] by olle
Refs #608. LabEnv updated to new scripting pattern: 1. XML …
10:48 AM Ticket #674 (Generate document with report of sequencing results) updated by Nicklas Nordborg
(In [2988]) References #674: Generate document with report of …
10:48 AM Changeset [2988] by Nicklas Nordborg
References #674: Generate document with report of sequencing results …
10:14 AM Ticket #608 (Update Labenv to new scripting pattern) updated by olle
Design discussion: 1. Each JSP file should be modified to not …

Dec 1, 2014:

1:39 PM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
(In [2987]) Refs #690. Plug-in configuration XML file …
1:39 PM Changeset [2987] by olle
Refs #690. Plug-in configuration XML file plugin-configurations.xml
11:53 AM Ticket #708 (Add example skin) updated by Nicklas Nordborg
(In [2986]) Fixes #708: Add example skin BASE 3.4 JAR files.
11:53 AM Changeset [2986] by Nicklas Nordborg
Fixes #708: Add example skin BASE 3.4 JAR files.

Nov 28, 2014:

1:43 PM Ticket #708 (Add example skin) closed by Nicklas Nordborg
fixed: (In [2985]) Fixes #708: Add example skin Added the "Pink Panther" …
1:43 PM Changeset [2985] by Nicklas Nordborg
Fixes #708: Add example skin Added the "Pink Panther" skin. It's not …
1:22 PM Ticket #708 (Add example skin) created by Nicklas Nordborg
It would be nice to have a simple example skin that demonstrates a few …

Nov 27, 2014:

1:37 PM Changeset [2984] by Nicklas Nordborg
Removing explicit reference to JRE6 to make Eclipse stop complaining …
1:34 PM Ticket #707 (Switch to Slf4j) closed by Nicklas Nordborg
fixed: (In [2983]) Fixes #707: Switch to Slf4j
1:34 PM Changeset [2983] by Nicklas Nordborg
Fixes #707: Switch to Slf4j
1:34 PM Ticket #707 (Switch to Slf4j) created by Nicklas Nordborg
We don't use any logging in the example code, but since the BASE core …
1:24 PM Ticket #606 (Switch to JDOM 2) updated by Nicklas Nordborg
Milestone changed
1:24 PM Ticket #706 (Update LabEnv to use BASE database capabilties instead of SQLite) updated by Nicklas Nordborg
Milestone changed
1:22 PM Ticket #706 (Update LabEnv to use BASE database capabilties instead of SQLite) updated by Nicklas Nordborg
Description changed
1:22 PM Ticket #706 (Update LabEnv to use BASE database capabilties instead of SQLite) updated by Nicklas Nordborg
Description changed
1:22 PM Ticket #706 (Update LabEnv to use BASE database capabilties instead of SQLite) created by Nicklas Nordborg
The LabEnv extension currently uses an SQLite database for storing …

Nov 25, 2014:

3:26 PM Ticket #696 (Implement some skin examples for BASE) updated by Nicklas Nordborg
(In [2982]) References #696: Implement some skin examples for BASE A …
3:26 PM Changeset [2982] by Nicklas Nordborg
References #696: Implement some skin examples for BASE A little bit …
3:18 PM Ticket #701 (Check compability with BASE 3.4) closed by Nicklas Nordborg
fixed
2:59 PM Ticket #701 (Check compability with BASE 3.4) updated by Nicklas Nordborg
(In [2981]) References #701: Check compability with BASE 3.4 Some …
2:59 PM Changeset [2981] by Nicklas Nordborg
References #701: Check compability with BASE 3.4 Some minor issues …
2:57 PM Ticket #705 (Remove internal sorting methods in retraction servlet) closed by Nicklas Nordborg
fixed: (In [2980]) Fixes #705: Remove internal sorting methods in retraction …
2:57 PM Changeset [2980] by Nicklas Nordborg
Fixes #705: Remove internal sorting methods in retraction servlet
2:54 PM Ticket #705 (Remove internal sorting methods in retraction servlet) updated by Nicklas Nordborg
Priority, Type, Component, Owner, Milestone changed
2:53 PM Ticket #705 (Remove internal sorting methods in retraction servlet) created by Nicklas Nordborg
Sorting is preferably done by the database.
2:50 PM Ticket #704 (NullPointerException in retraction servlet when entering a case name ...) closed by Nicklas Nordborg
fixed: (In [2979]) Fixes #704: NullPointerException in retraction servlet …
2:50 PM Changeset [2979] by Nicklas Nordborg
Fixes #704: NullPointerException in retraction servlet when entering a …
2:39 PM Ticket #704 (NullPointerException in retraction servlet when entering a case name ...) created by Nicklas Nordborg
Stack trace from Reggie 2.17.3-dev […] Seems like …
1:04 PM Ticket #696 (Implement some skin examples for BASE) updated by Nicklas Nordborg
(In [2978]) References #696: Implement some skin examples for BASE …
1:04 PM Changeset [2978] by Nicklas Nordborg
References #696: Implement some skin examples for BASE Adding a …
1:03 PM net.sf.basedb.skincollection edited by Nicklas Nordborg
(diff)
9:12 AM Ticket #696 (Implement some skin examples for BASE) updated by Nicklas Nordborg
(In [2977]) References #696: Implement some skin examples for BASE …
9:12 AM Changeset [2977] by Nicklas Nordborg
References #696: Implement some skin examples for BASE Updated README.
9:07 AM net.sf.basedb.skincollection/ScreenShots edited by Nicklas Nordborg
(diff)
9:06 AM test-server.png attached to net.sf.basedb.skincollection/ScreenShots by Nicklas Nordborg
Gold skin with test server + server id
9:06 AM gold-skin-2.png attached to net.sf.basedb.skincollection/ScreenShots by Nicklas Nordborg
Gold skin create sample dialog
9:06 AM gold-skin-1.png attached to net.sf.basedb.skincollection/ScreenShots by Nicklas Nordborg
Gold skin welcome page
9:05 AM net.sf.basedb.skincollection/ScreenShots created by Nicklas Nordborg
9:03 AM net.sf.basedb.skincollection created by Nicklas Nordborg
Adding wiki page for the skin collection extension
8:33 AM Ticket #679 (Configuration file improvments) updated by Nicklas Nordborg
(In [2976]) References #679: Configuration file improvments Error …
8:33 AM Changeset [2976] by Nicklas Nordborg
References #679: Configuration file improvments Error message was …
8:20 AM Ticket #696 (Implement some skin examples for BASE) updated by Nicklas Nordborg
(In [2975]) References #696: Implement some skin examples for BASE …
8:19 AM Changeset [2975] by Nicklas Nordborg
References #696: Implement some skin examples for BASE Changed …
7:48 AM Ticket #703 (Make print package compatible with skins) closed by Nicklas Nordborg
fixed: (In [2974]) Fixes #703: Make print package compatible with skins
7:48 AM Changeset [2974] by Nicklas Nordborg
Fixes #703: Make print package compatible with skins
7:29 AM Ticket #703 (Make print package compatible with skins) created by Nicklas Nordborg
The current print package is ok, but there are some things that can be …

Nov 24, 2014:

4:29 PM Ticket #608 (Update Labenv to new scripting pattern) updated by olle
Traceability note: * The lab environment extension was introduced in …
4:26 PM Ticket #608 (Update Labenv to new scripting pattern) updated by olle
Status changed
Ticket accepted.
3:33 PM Ticket #672 (RNA concentration normalization wizard) closed by Nicklas Nordborg
fixed
2:21 PM Ticket #674 (Generate document with report of sequencing results) updated by Nicklas Nordborg
(In [2973]) References #674: Generate document with report of …
2:21 PM Changeset [2973] by Nicklas Nordborg
References #674: Generate document with report of sequencing results. …
2:16 PM Ticket #696 (Implement some skin examples for BASE) updated by Nicklas Nordborg
(In [2972]) References #696: Implement some skin examples for BASE …
2:16 PM Changeset [2972] by Nicklas Nordborg
References #696: Implement some skin examples for BASE Added color …
11:21 AM Ticket #696 (Implement some skin examples for BASE) updated by Nicklas Nordborg
(In [2971]) References #696: Implement some skin examples for BASE …
11:21 AM Changeset [2971] by Nicklas Nordborg
References #696: Implement some skin examples for BASE Need more …
11:20 AM Ticket #701 (Check compability with BASE 3.4) updated by Nicklas Nordborg
(In [2970]) References #701: Check compability with BASE 3.4 Print …
11:20 AM Changeset [2970] by Nicklas Nordborg
References #701: Check compability with BASE 3.4 Print buttons on lab …
11:01 AM Ticket #701 (Check compability with BASE 3.4) updated by Nicklas Nordborg
Status, Description changed
11:01 AM Ticket #702 (Use skin features in BASE 3.4) created by Nicklas Nordborg
BASE 3.4 introduces the possibility to install 'skins' to change the …
11:00 AM Ticket #701 (Check compability with BASE 3.4) created by Nicklas Nordborg
BASE 3.4 introduces the possibility to install 'skins' to change the …
9:27 AM Ticket #696 (Implement some skin examples for BASE) updated by Nicklas Nordborg
(In [2969]) References #696: Implement some skin examples for BASE …
9:27 AM Changeset [2969] by Nicklas Nordborg
References #696: Implement some skin examples for BASE Added …

Nov 21, 2014:

2:35 PM Ticket #696 (Implement some skin examples for BASE) updated by Nicklas Nordborg
(In [2968]) References #696: Implement some skin examples for BASE …
2:35 PM Changeset [2968] by Nicklas Nordborg
References #696: Implement some skin examples for BASE Added "Server …
12:55 PM Ticket #696 (Implement some skin examples for BASE) updated by Nicklas Nordborg
(In [2967]) References #696: Implement some skin examples for BASE …
12:55 PM Changeset [2967] by Nicklas Nordborg
References #696: Implement some skin examples for BASE Added "Gold" …

Nov 20, 2014:

12:31 PM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
(In [2966]) Refs #690. Since no biopsy type annotation is currently …
12:31 PM Changeset [2966] by olle
Refs #690. Since no biopsy type annotation is currently used in …
12:29 PM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
Design update: * Since no biopsy type annotation is currently used …
11:25 AM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
(In [2965]) Refs #690. Javascript file persinfo.js in …
11:25 AM Changeset [2965] by olle
Refs #690. Javascript file persinfo.js in resources/personal/
9:17 AM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
(In [2964]) Refs #690. The case registration section is updated with …
9:17 AM Changeset [2964] by olle
Refs #690. The case registration section is updated with an initial …
9:13 AM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
Design update: * The case registration section should be extended …
8:36 AM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
Functional specification update: * The case registration section …
8:01 AM Ticket #700 (Missing '-' between plate name and library name in start alignment and ...) closed by Nicklas Nordborg
fixed: (In [2963]) Fixes #700: Missing '-' between plate name and library …
8:01 AM Changeset [2963] by Nicklas Nordborg
Fixes #700: Missing '-' between plate name and library name in start …
8:00 AM Ticket #700 (Missing '-' between plate name and library name in start alignment and ...) updated by Nicklas Nordborg
Summary changed
7:59 AM Ticket #700 (Missing '-' between plate name and library name in start alignment and ...) created by Nicklas Nordborg

Nov 19, 2014:

3:34 PM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
(In [2962]) Refs #690. Two new sites, "Karlskrona" and "Växjö" added, …
3:34 PM Changeset [2962] by olle
Refs #690. Two new sites, "Karlskrona" and "Växjö" added, both …
2:03 PM Ticket #674 (Generate document with report of sequencing results) updated by Nicklas Nordborg
(In [2961]) References #674: Generate document with report of …
2:03 PM Changeset [2961] by Nicklas Nordborg
References #674: Generate document with report of sequencing results …
1:34 PM Changeset [2960] by Nicklas Nordborg
Merge Reggie 2.17.2 to trunk.
1:01 PM Changeset [2959] by Nicklas Nordborg
Preparing for future release Reggie 2.17.3
12:59 PM Milestone Reggie v2.17.2 completed
Bug fixes for Reggie 2.17.1. See [wiki:net.sf.basedb.reggie Reggie …
12:58 PM Ticket #699 (Library registration doesn't warn about missing values in Caliper well ...) updated by Nicklas Nordborg
Summary changed
12:57 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 2.17.2 (diff)
12:56 PM reggie-2.17.2.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 2.17.2
12:56 PM Ticket #697 (Can't start alignment if there are libraries without a library plate) closed by Nicklas Nordborg
fixed
12:54 PM Changeset [2958] by Nicklas Nordborg
Tagging Reggie 2.17.2
12:53 PM Ticket #699 (Library registration doesn't warn about missing values in Caliper well ...) closed by Nicklas Nordborg
fixed: (In [2957]) Fixes #699: Caliper importer doesn't warn about missing …
12:53 PM Changeset [2957] by Nicklas Nordborg
Fixes #699: Caliper importer doesn't warn about missing values in …
11:58 AM Ticket #699 (Library registration doesn't warn about missing values in Caliper well ...) created by Nicklas Nordborg
If a Caliper well table CSV file contains a row for a sample that has …
10:57 AM Changeset [2956] by Nicklas Nordborg
Preparing to release Reggie 2.17.2
10:51 AM Ticket #697 (Can't start alignment if there are libraries without a library plate) updated by Nicklas Nordborg
(In [2955]) References #697: Can't start alignment if there are …
10:51 AM Changeset [2955] by Nicklas Nordborg
References #697: Can't start alignment if there are libraries without …
9:27 AM Ticket #697 (Can't start alignment if there are libraries without a library plate) updated by Nicklas Nordborg
(In [2954]) References #697: Can't start alignment if there are …
9:27 AM Changeset [2954] by Nicklas Nordborg
References #697: Can't start alignment if there are libraries without …
8:48 AM Ticket #698 (Set number of nodes in the demux wizard) closed by Nicklas Nordborg
fixed: (In [2953]) Fixes #698: Set number of nodes in the demux wizard
8:48 AM Changeset [2953] by Nicklas Nordborg
Fixes #698: Set number of nodes in the demux wizard
8:39 AM Ticket #697 (Can't start alignment if there are libraries without a library plate) updated by Nicklas Nordborg
(In [2952]) References #697: Can't start alignment if there are …
8:39 AM Changeset [2952] by Nicklas Nordborg
References #697: Can't start alignment if there are libraries without …
7:52 AM Ticket #698 (Set number of nodes in the demux wizard) created by Nicklas Nordborg
The number of nodes to use for a demux job is currently configured in …
7:49 AM Ticket #697 (Can't start alignment if there are libraries without a library plate) created by Nicklas Nordborg
The javascript is not prepared for this case since it tries to add the …

Nov 18, 2014:

1:10 PM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
(In [2951]) Refs #690. Text file README updated to describe MeLuDi …
1:10 PM Changeset [2951] by olle
Refs #690. Text file README updated to describe MeLuDi v.1.0-a01.
10:43 AM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
(In [2950]) Refs #690. Currently unused files and directories removed …
10:43 AM Changeset [2950] by olle
Refs #690. Currently unused files and directories removed (file …
10:40 AM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
(In [2949]) Refs #690. Ant build file build.xml updated to not …
10:40 AM Changeset [2949] by olle
Refs #690. Ant build file build.xml updated to not include removed …
8:46 AM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
(In [2948]) Refs #690. Currently unused files and directories removed, …
8:46 AM Changeset [2948] by olle
Refs #690. Currently unused files and directories removed, forcing …
8:18 AM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
(In [2947]) Refs #690. SVN properties svn:ignore updated/created for …
8:18 AM Changeset [2947] by olle
Refs #690. SVN properties svn:ignore updated/created for two …

Nov 17, 2014:

11:21 AM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
(In [2946]) Refs #690. Java servlet ExportServlet removed, since it …
11:21 AM Changeset [2946] by olle
Refs #690. Java servlet ExportServlet removed, since it is not used …
10:00 AM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
(In [2945]) Refs #690. Java classes/files updated to allow a …
10:00 AM Changeset [2945] by olle
Refs #690. Java classes/files updated to allow a "MeLuDi" column to …
9:52 AM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
(In [2944]) Refs #690. Java servlet class/file InstallServlet.java
9:52 AM Changeset [2944] by olle
Refs #690. Java servlet class/file InstallServlet.java in …
9:26 AM Changeset [2943] by Nicklas Nordborg
Merge Reggie 2.17.1 to trunk.
9:23 AM Changeset [2942] by Nicklas Nordborg
Preparing for future release Reggie 2.17.2
9:21 AM Milestone Reggie v2.17.1 completed
Bug fixes for Reggie 2.17. See [wiki:net.sf.basedb.reggie Reggie …
9:21 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 2.17.1 (diff)
9:19 AM reggie-2.17.1.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 2.17.1
9:18 AM Changeset [2941] by Nicklas Nordborg
Tagging Reggie 2.17.1
9:17 AM Changeset [2940] by Nicklas Nordborg
Preparing to release Reggie 2.17.1
8:48 AM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
(In [2939]) Refs #690. CSS files case_summary.css and …
8:48 AM Changeset [2939] by olle
Refs #690. CSS files case_summary.css and printable.css in …
8:41 AM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
(In [2938]) Refs #690. Javascript file case-summary.js in …
8:41 AM Changeset [2938] by olle
Refs #690. Javascript file case-summary.js in resources/scripts/
8:29 AM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
(In [2937]) Refs #690. Files README and RELEASE updated to refer …
8:29 AM Changeset [2937] by olle
Refs #690. Files README and RELEASE updated to refer to meludi
8:14 AM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
(In [2936]) Refs #690. File LICENSE updated to refer to MeLuDi
8:14 AM Changeset [2936] by olle
Refs #690. File LICENSE updated to refer to MeLuDi instead of Reggie.
7:45 AM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
(In [2935]) Refs #690. File meludi.jar removed from source code …
7:45 AM Changeset [2935] by olle
Refs #690. File meludi.jar removed from source code control, since …
7:39 AM Ticket #690 (MeLuDi - Registration wizard for melanoma-lung cancer projects) updated by olle
(In [2934]) Refs #690. File json-simple-1.1.1.jar in lib/compile/
7:39 AM Changeset [2934] by olle
Refs #690. File json-simple-1.1.1.jar in lib/compile/ removed, …
7:29 AM Ticket #695 (New reporter annotations) updated by Nicklas Nordborg
Milestone changed
Note: See TracTimeline for information about the timeline view.