Timeline


and

Aug 18, 2014:

2:52 PM Ticket #614 (Improve error handling when executing jobs on the cluster) closed by nicklas
fixed
2:48 PM Ticket #595 (Confirm alignment) closed by nicklas
fixed
2:48 PM Ticket #593 (Start masking and alignment) closed by nicklas
fixed
2:48 PM Ticket #548 (Register Demux and Merge as ended) closed by nicklas
fixed
2:47 PM Ticket #547 (Start Demux and Merge) closed by nicklas
fixed
2:46 PM Ticket #533 (Add secondary analysis section to Reggie) closed by nicklas
fixed
2:44 PM Ticket #578 (Move to BASE 3.3) closed by nicklas
fixed
2:43 PM Ticket #571 (Update Reggie to new scripting pattern (first step)) closed by nicklas
fixed
1:55 PM Milestone FTP Server v1.4 completed
For more information see the [wiki:net.sf.basedb.ftp FTP Server …
1:53 PM PluginDownload edited by nicklas
Released Ftp server 1.4 (diff)
1:52 PM net.sf.basedb.ftp edited by nicklas
Released Ftp server 1.4 (diff)
1:51 PM base-ftpserver-1.4.tar.gz attached to net.sf.basedb.ftp by nicklas
BASE FTP Server Extension 1.4
1:50 PM Changeset [2589] by nicklas
Preparing for future relase of FTP server 1.5
1:50 PM Changeset [2588] by nicklas
Tagging FTP server 1.4
1:49 PM Changeset [2587] by nicklas
Preparing to release FTP server 1.4
1:47 PM Milestone External files support 1.1 completed
An extension package containing support for additional protocols to …
1:47 PM PluginDownload edited by nicklas
Released Xfiles 1.1 (diff)
1:46 PM xfiles-1.1.tar.gz attached to net.sf.basedb.xfiles by nicklas
Xfiles 1.1
1:45 PM net.sf.basedb.xfiles edited by nicklas
Released Xfiles 1.1 (diff)
1:44 PM Changeset [2586] by nicklas
Preparing for future relase of Xfiles 1.2
1:43 PM Changeset [2585] by nicklas
Tagging Xfiles 1.1
1:43 PM Changeset [2584] by nicklas
Preparing to release Xfiles 1.1
11:30 AM Ticket #617 (Re-use server connections within a transaction) closed by nicklas
fixed
11:11 AM Changeset [2583] by nicklas
References #617: Re-use server connections within a transaction Fixes …
11:09 AM net.sf.basedb.reggie/notes216 edited by nicklas
More update notes for Reggie 2.16 (diff)

Aug 15, 2014:

2:56 PM Changeset [2582] by nicklas
References #547 and #593. Use temp folder provided by the grid …
1:19 PM Changeset [2581] by nicklas
References #547: Start Demux and Merge Use different number of tiles …
9:38 AM Changeset [2580] by nicklas
References #593: Start masking and alignment Use temporary filter in …
9:36 AM Changeset [2579] by nicklas
References #547: Start Demux and Merge Use temporary filter in …
9:34 AM Changeset [2578] by nicklas
References #595: Confirm alignment Linkf generated files with the …
8:02 AM Changeset [2577] by nicklas
References #548: Register Demux and Merge as ended To avoid too many …

Aug 14, 2014:

3:48 PM Ticket #618 (Specimen tube item is registered with incorrect name) closed by nicklas
fixed: (In [2576]) Fixes #618: Specimen tube item is registered with …
3:48 PM Changeset [2576] by nicklas
Fixes #618: Specimen tube item is registered with incorrect name
3:45 PM Ticket #618 (Specimen tube item is registered with incorrect name) created by nicklas
In rare cases a specimen tube can be named incorrectly: 1. Register …
1:29 PM Changeset [2575] by nicklas
References #595: Confirm alignment Do not need to open 2 DbControl:s.
9:41 AM Changeset [2574] by nicklas
References #595: Confirm alignment Better progress reporting during …
8:54 AM Changeset [2573] by nicklas
References #595: Confirm alignment Changes related to [2566] due to …

Aug 13, 2014:

3:51 PM Changeset [2572] by nicklas
References #617: Re-use server connections within a transaction …
11:31 AM Changeset [2571] by nicklas
References #617: Re-use server connections within a transaction …

Aug 12, 2014:

8:33 AM Ticket #617 (Re-use server connections within a transaction) created by nicklas
The current implementation opens a new connection for each remote file …

Aug 11, 2014:

2:43 PM Changeset [2570] by nicklas
References #548: Register Demux and Merge as ended Register FASTQ …
2:36 PM Ticket #616 (External files with a file server can't be downloaded) closed by nicklas
fixed: (In [2569]) Fixes #616: External files with a file server can't be …
2:36 PM Changeset [2569] by nicklas
Fixes #616: External files with a file server can't be downloaded
2:17 PM Ticket #616 (External files with a file server can't be downloaded) created by nicklas
There is a bug in the FTP server when trying to download an external …
10:55 AM Changeset [2568] by nicklas
References #593: Start masking and alignment Changes related to …
10:48 AM Changeset [2567] by nicklas
Removing scripts that are no longer used by reggie.
10:34 AM Changeset [2566] by nicklas
References #547: Start Demux and Merge Specify project name in the …
8:36 AM Changeset [2565] by nicklas
References #533: Add secondary analysis section to Reggie Installing …

Aug 8, 2014:

12:51 PM Changeset [2564] by nicklas
References #533: Add secondary analysis section to Reggie Forgot this …
11:58 AM Changeset [2563] by nicklas
References #533: Add secondary analysis section to Reggie Use …
8:01 AM Changeset [2562] by nicklas
References #533: Add secondary analysis section to Reggie Installing …

Aug 7, 2014:

3:33 PM Changeset [2561] by nicklas
References #548: Register Demux and Merge as ended checkMd5 …

Aug 6, 2014:

2:11 PM Changeset [2560] by nicklas
References #547 and #593. Do not use more threads than the number of …
12:55 PM Changeset [2559] by nicklas
References #614: Improve error handling when executing jobs on the …
12:50 PM Changeset [2558] by nicklas
Forgot to execute the last samtools command

Aug 5, 2014:

3:59 PM Changeset [2557] by nicklas
Added 'alignment_statisics.sh' which replaces the …
3:58 PM Changeset [2556] by nicklas
References #614: Improve error handling when executing jobs on the …
2:39 PM Changeset [2555] by nicklas
References #614: Improve error handling when executing jobs on the …
11:19 AM Changeset [2554] by nicklas
References #614: Improve error handling when executing jobs on the …
9:39 AM Changeset [2553] by nicklas
References #614: Improve error handling when executing jobs on the …
8:12 AM Changeset [2552] by nicklas
References #614: Improve error handling when executing jobs on the …
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