Timeline



Jul 10, 2014:

4:41 PM Changeset [2551] by olle
4:40 PM Changeset [2550] by olle
4:40 PM Changeset [2549] by olle
4:39 PM Changeset [2548] by olle
Registration extension for Melanoma/Lung cancer project.

Jul 4, 2014:

7:54 AM Changeset [2547] by olle
Preparing for future release LabEnv v1.3: 1. Ant build file …

Jul 3, 2014:

6:00 PM Milestone LabEnv v1.2 completed
Further update of the LabEnv extension to BASE, a package allowing …
4:39 PM net.sf.basedb.labenv edited by olle
LabEnv info page updated with data for version 1.2. (diff)
4:26 PM labenv-1.2.tar.gz attached to net.sf.basedb.labenv by olle
LabEnv version 1.2 package
4:11 PM Ticket #615 (Lab environment extension stability improvement and bug fixes for v1.1) closed by olle
fixed: Ticket closed as stability and bug issues in LabEnv v1.1 at the time …
4:01 PM Changeset [2546] by olle
Tagging release 1.2
3:39 PM Ticket #615 (Lab environment extension stability improvement and bug fixes for v1.1) updated by olle
(In [2545]) Refs #615. Lab environment extension updated by setting …
3:39 PM Changeset [2545] by olle
Refs #615. Lab environment extension updated by setting version number …
3:34 PM Ticket #615 (Lab environment extension stability improvement and bug fixes for v1.1) updated by olle
(In [2544]) Refs #615. Lab environment extension updated by setting …
3:34 PM Changeset [2544] by olle
Refs #615. Lab environment extension updated by setting version number …
3:31 PM Ticket #615 (Lab environment extension stability improvement and bug fixes for v1.1) updated by olle
(In [2543]) Refs #615. Configuration file META-INF/extensions.xml …
3:31 PM Changeset [2543] by olle
Refs #615. Configuration file META-INF/extensions.xml updated by …
3:23 PM Ticket #608 (Update Labenv to new scripting pattern) updated by olle
Description, Milestone changed
Moved ticket to LabEnv v1.3.
3:22 PM Ticket #606 (Switch to JDOM 2) updated by olle
Milestone changed
Moved ticket to LabEnv v1.3.
3:04 PM Ticket #615 (Lab environment extension stability improvement and bug fixes for v1.1) updated by olle
(In [2542]) Refs #615. Lab environment extension updated in …
3:04 PM Changeset [2542] by olle
Refs #615. Lab environment extension updated in installation …
2:45 PM Ticket #615 (Lab environment extension stability improvement and bug fixes for v1.1) updated by olle
(In [2541]) Refs #615. Lab environment extension updated with better …
2:45 PM Changeset [2541] by olle
Refs #615. Lab environment extension updated with better error support …
2:27 PM Ticket #615 (Lab environment extension stability improvement and bug fixes for v1.1) updated by olle
(In [2540]) Refs #615. Lab environment extension updated to handle odd …
2:27 PM Changeset [2540] by olle
Refs #615. Lab environment extension updated to handle odd lab sensor …
2:19 PM Ticket #615 (Lab environment extension stability improvement and bug fixes for v1.1) updated by olle
Debug output has revealed that lab sensors might produce output where …
1:48 PM Ticket #615 (Lab environment extension stability improvement and bug fixes for v1.1) updated by olle
(In [2539]) Refs #615. Lab environment extension service updated to …
1:48 PM Changeset [2539] by olle
Refs #615. Lab environment extension service updated to hopefully …
1:38 PM Ticket #615 (Lab environment extension stability improvement and bug fixes for v1.1) updated by olle
LabEnv stability discussion: * The lab environment extension …
12:32 PM Ticket #615 (Lab environment extension stability improvement and bug fixes for v1.1) updated by olle
Traceability note: * The lab environment extension was introduced in …
12:27 PM Ticket #615 (Lab environment extension stability improvement and bug fixes for v1.1) updated by olle
Status changed
Ticket accepted.
12:26 PM Ticket #615 (Lab environment extension stability improvement and bug fixes for v1.1) created by olle
Lab environment extension stability improvement and bug fixes for v1.1 …
11:26 AM Ticket #610 (Mail server prints debug output as default) closed by olle
fixed: Ticket closed since the mail server debug output has been turned off.

Jul 2, 2014:

2:31 PM Ticket #614 (Improve error handling when executing jobs on the cluster) updated by Nicklas Nordborg
(In [2538]) References #614: Improve error handling when executing …
2:31 PM Changeset [2538] by Nicklas Nordborg
References #614: Improve error handling when executing jobs on the …
2:28 PM Changeset [2537] by Nicklas Nordborg
Adding wrapper script for directing output to stderr or stdout …
2:26 PM Ticket #614 (Improve error handling when executing jobs on the cluster) updated by Nicklas Nordborg
I have tested one idea with a wrapper script that starts a program …
9:53 AM Ticket #614 (Improve error handling when executing jobs on the cluster) updated by Nicklas Nordborg
bowtie2 May not detect all errors. For example, if the FASTQ …
8:47 AM Ticket #614 (Improve error handling when executing jobs on the cluster) updated by Nicklas Nordborg
Trimmomatic The exit code for Trimmomatic seems to behave as …
8:37 AM Ticket #614 (Improve error handling when executing jobs on the cluster) updated by Nicklas Nordborg
Picard The exit code for Picard seems to behave as expected. …
8:27 AM Ticket #614 (Improve error handling when executing jobs on the cluster) created by Nicklas Nordborg
Error handling is important for the functionality of the …

Jul 1, 2014:

3:30 PM Ticket #613 (Auto-detect tab or comma in Caliper-files) closed by Nicklas Nordborg
fixed: (In [2536]) Fixes #613: Auto-detect tab or comma in Caliper-files
3:30 PM Changeset [2536] by Nicklas Nordborg
Fixes #613: Auto-detect tab or comma in Caliper-files
2:37 PM Ticket #613 (Auto-detect tab or comma in Caliper-files) created by Nicklas Nordborg
It is not uncommon that Caliper Well table files need to be manually …
11:55 AM Ticket #593 (Start masking and alignment) updated by Nicklas Nordborg
(In [2535]) References #593: Start masking and alignment Reset …
11:55 AM Changeset [2535] by Nicklas Nordborg
References #593: Start masking and alignment Reset AutoProcessing …

Jun 30, 2014:

9:07 AM Ticket #533 (Add secondary analysis section to Reggie) updated by Nicklas Nordborg
(In [2534]) References #533 and BASE ticket …
9:07 AM Changeset [2534] by Nicklas Nordborg
References #533 and BASE ticket ​http://base.thep.lu.se/ticket/1824. …

Jun 27, 2014:

8:38 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Reggie 2.16-alpha-1 (diff)
8:35 AM reggie-2.16-alpha-1.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 2.16-alpha-1
8:32 AM Changeset [2533] by Nicklas Nordborg
Tagging Reggie 2.16-alpha-1
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