Timeline
Jun 17, 2014:
- 11:50 AM Ticket #530 (Display logs from temperature and humidity measurements) updated by
-
Milestone changed
- 11:45 AM Ticket #609 (Add support for ignoring YubiKey login depending on client) closed by
- fixed: (In [2511]) Fixes #609: Add support for ignoring YubiKey login …
- 11:45 AM Changeset [2511] by
- Fixes #609: Add support for ignoring YubiKey login depending on client
- 11:41 AM net.sf.basedb.yubikey/install edited by
- Adding note about disabling YubiKey for some clients (#609) (diff)
- 11:31 AM net.sf.basedb.yubikey/using edited by
- Fixing line breaks (diff)
- 11:08 AM Ticket #609 (Add support for ignoring YubiKey login depending on client) created by
- The use case is that when connecting with FTP to the BASE server it is …
- 9:33 AM Ticket #608 (Update Labenv to new scripting pattern) created by
- Similar to #564 and #571, but Labenv contains a lot more script than …
- 9:20 AM Ticket #607 (Date /time format is different in configuration file and GUI) created by
- In labenv-config.xml the <startdate> must be entered in YYYY-MM-DD …
Jun 16, 2014:
- 9:35 AM Ticket #533 (Add secondary analysis section to Reggie) updated by
- (In [2510]) References #533: Add secondary analysis section to Reggie …
- 9:35 AM Changeset [2510] by
- References #533: Add secondary analysis section to Reggie Include …
- 9:27 AM Ticket #606 (Switch to JDOM 2) updated by
-
Description changed
- 9:16 AM Changeset [2509] by
- Merge Reggie 2.15.3 to the trunk.
- 9:01 AM Milestone Reggie v2.15.3 completed
- Bug fixes for Reggie 2.15. See [wiki:net.sf.basedb.reggie Reggie …
- 9:00 AM net.sf.basedb.reggie edited by
- Released Reggie 2.15.3 (diff)
- 8:58 AM Changeset [2508] by
- Tagging Reggie 2.15.3
- 8:57 AM Changeset [2507] by
- Preparing to release Reggie 2.15.3
Jun 13, 2014:
- 12:03 PM net.sf.basedb.reggie/notes216 created by
- 8:53 AM Ticket #604 (New wizard "RNA dilution registration") updated by
- (In [2506]) References #604: New wizard "RNA dilution registration" …
- 8:53 AM Changeset [2506] by
- References #604: New wizard "RNA dilution registration" Removed debug …
- 8:52 AM Ticket #604 (New wizard "RNA dilution registration") closed by
- fixed: (In [2505]) Fixes #604: New wizard "RNA dilution registration" Added …
- 8:52 AM Changeset [2505] by
- Fixes #604: New wizard "RNA dilution registration" Added the new RNA …
- 8:12 AM Ticket #604 (New wizard "RNA dilution registration") updated by
- (In [2504]) References #604: New wizard "RNA dilution registration" …
- 8:12 AM Changeset [2504] by
- References #604: New wizard "RNA dilution registration" The lab …
Jun 12, 2014:
- 2:52 PM Ticket #604 (New wizard "RNA dilution registration") updated by
-
Status changed
- 2:51 PM Ticket #603 (Default sequencing cycles for NextSeq should be 76-6-76) closed by
- fixed: (In [2503]) Fixes #603: Default sequencing cycles for NextSeq should …
- 2:51 PM Changeset [2503] by
- Fixes #603: Default sequencing cycles for NextSeq should be 76-6-76
- 12:44 PM Ticket #606 (Switch to JDOM 2) created by
- The BASE core switched to JDOM 2 in BASE 3.4. The old JDOM 1.1 support …
- 12:00 PM Changeset [2502] by
- Updating classpath to point to the current JAR files.
- 11:56 AM Ticket #605 (Switch to JDOM 2) created by
- The BASE core switched to JDOM 2 in BASE 3.4. The old JDOM 1.1 support …
- 11:31 AM Ticket #530 (Display logs from temperature and humidity measurements) updated by
- (In [2501]) Refs #530. Case summary updated for specific event dates …
- 11:31 AM Changeset [2501] by
- Refs #530. Case summary updated for specific event dates by optional …
- 11:30 AM Ticket #604 (New wizard "RNA dilution registration") created by
- Due to changed workflow in the lab it would be nice to have a new …
- 11:06 AM Ticket #530 (Display logs from temperature and humidity measurements) updated by
- Design implementation: 1. The functionality uses LabEnv JSP file …
- 9:37 AM Ticket #530 (Display logs from temperature and humidity measurements) updated by
- Design discussion: * The case summary page contains most/all dates …
- 8:36 AM Ticket #530 (Display logs from temperature and humidity measurements) updated by
-
Summary changed
Typo fixed. - 8:18 AM Ticket #530 (Display logs from temperature and humidity measurements) updated by
- Traceability note: * The lab environment extension was introduced in …
- 8:12 AM Ticket #530 (Display logs from temperature and humidity measurements) updated by
-
Status, Owner changed
Ticket accepted.
Jun 11, 2014:
- 4:10 PM Ticket #603 (Default sequencing cycles for NextSeq should be 76-6-76) created by
- The current default values in the "Create flow cells" wizard are …
Jun 10, 2014:
- 1:17 PM Ticket #571 (Update Reggie to new scripting pattern (first step)) updated by
- (In [2500]) References #571: Update Reggie to new scripting pattern …
- 1:17 PM Changeset [2500] by
- References #571: Update Reggie to new scripting pattern Fixed call to …
Jun 5, 2014:
- 4:06 PM Milestone LabEnv v1.1 completed
- An update of the LabEnv extension to BASE, a package allowing storage …
- 4:04 PM Ticket #592 (Lab environment extension improved report routines) closed by
- fixed: Ticket closed as a the lab environment extension has been updated with …
- 3:42 PM Ticket #595 (Confirm alignment) updated by
- (In [2499]) References #595: Confirm alignment Display PT_READS in …
- 3:42 PM Changeset [2499] by
- References #595: Confirm alignment Display PT_READS in the …
- 3:41 PM Ticket #548 (Register Demux and Merge as ended) updated by
- (In [2498]) References #548: Register Demux and Merge as ended …
- 3:41 PM Changeset [2498] by
- References #548: Register Demux and Merge as ended Display PT_READS …
- 3:41 PM Ticket #547 (Start Demux and Merge) updated by
- (In [2497]) References #547: Start Demux and Merge Added trimmomatic …
- 3:41 PM Changeset [2497] by
- References #547: Start Demux and Merge Added trimmomatic to the …
- 3:26 PM Changeset [2496] by
- Adding svn properties
- 3:24 PM Changeset [2495] by
- Adding wrapper for calling trimmomatic. Includes default settings for …
- 3:02 PM Changeset [2494] by
- unwanted
- 2:55 PM Changeset [2493] by
- Checking out tagged release LabEnv 1.1
- 2:48 PM net.sf.basedb.labenv edited by
- LabEnv info page updated with data for version 1.1. (diff)
- 2:14 PM PluginDownload edited by
- (diff)
- 2:14 PM PluginDownload edited by
- Updated note about web service support. (diff)
- 2:10 PM net.sf.basedb.examples.webservices edited by
- Updated note about web service support. (diff)
- 2:09 PM Changeset [2492] by
- LabEnv tagged release 1.1
- 1:55 PM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2491]) Refs #592. Lab environment extension updated by setting …
- 1:55 PM Changeset [2491] by
- Refs #592. Lab environment extension updated by setting version number …
- 1:43 PM Ticket #592 (Lab environment extension improved report routines) updated by
-
(In [2490]) Refs #592. Configuration file
META-INF/extensions.xml… - 1:43 PM Changeset [2490] by
-
Refs #592. Configuration file
META-INF/extensions.xmlupdated by … - 1:32 PM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2489]) Refs #592. Lab environment extension updated in versions …
- 1:32 PM Changeset [2489] by
- Refs #592. Lab environment extension updated in versions of external …
- 1:29 PM Ticket #602 (Focus fields on the YubiKey tab) closed by
- fixed: (In [2488]) Fixes #602: Focus fields on the YubiKey tab
- 1:29 PM Changeset [2488] by
- Fixes #602: Focus fields on the YubiKey tab
- 1:26 PM Ticket #602 (Focus fields on the YubiKey tab) created by
- When switching to the YubiKey tab in the edit user dialog it would be …
- 1:22 PM Ticket #601 (NullPointerException when trying to assign a YubiKey to a new user) closed by
- fixed: (In [2487]) Fixes #601: NullPointerException when trying to assign a …
- 1:22 PM Changeset [2487] by
- Fixes #601: NullPointerException when trying to assign a YubiKey to a …
- 11:21 AM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2486]) Refs #592. Lab environment extension updated in JSP files …
- 11:21 AM Changeset [2486] by
- Refs #592. Lab environment extension updated in JSP files by removing …
- 11:03 AM Ticket #601 (NullPointerException when trying to assign a YubiKey to a new user) updated by
-
Description changed
- 11:02 AM Ticket #601 (NullPointerException when trying to assign a YubiKey to a new user) created by
- Start creating a new user and then switch to the YubiKey tab. Instead …
- 8:56 AM Ticket #599 (YubiKey package is missing yubikey-extended-properties.xml) closed by
- fixed: (In [2485]) Fixes #599: YubiKey package is missing …
- 8:56 AM Changeset [2485] by
- Fixes #599: YubiKey package is missing yubikey-extended-properties.xml
- 8:54 AM Ticket #600 (Installation instructions for YubiKey extensions is not clear) closed by
- fixed
- 8:54 AM net.sf.basedb.yubikey/install edited by
- Fixes #600 (diff)
- 8:49 AM Ticket #600 (Installation instructions for YubiKey extensions is not clear) created by
- Step 3: If this is a FIRST-TIME INSTALLATION go through the step …
- 8:10 AM net.sf.basedb.yubikey/install edited by
- Add note about missing yubikey-extended-properties.xml (diff)
- 8:07 AM Ticket #599 (YubiKey package is missing yubikey-extended-properties.xml) created by
- Workaround is to download this file from the subversion repository: …
Jun 4, 2014:
- 12:19 PM PluginDownload edited by
- Updating information about new releases (diff)
- 12:16 PM Changeset [2484] by
- Preparing for future release YubiKey 1.1
- 12:16 PM Milestone YubiKey v1.0 completed
- Implementing an authentication module for YubiKey. …
- 12:15 PM net.sf.basedb.yubikey edited by
- Released YubiKey 1.0 (diff)
- 12:07 PM Ticket #580 (Authenticate users using YubiKey sticks) closed by
- fixed
- 12:07 PM Changeset [2483] by
- Tagging YubiKey 1.0
- 12:06 PM Changeset [2482] by
- Preparing to release Yubikey 1.0
- 12:00 PM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2481]) Refs #592. Lab environment extension updated for …
- 12:00 PM Changeset [2481] by
- Refs #592. Lab environment extension updated for displaying lab …
- 11:45 AM Changeset [2480] by
- Preparing for future release print package 1.2
- 11:44 AM Milestone Print package v1.1 completed
- See Print package extension page for more …
- 11:43 AM net.sf.basedb.print edited by
- Released print package 1.1 (diff)
- 11:42 AM Changeset [2479] by
- Tagging print package 1.1
- 11:41 AM Changeset [2478] by
- Preparing to release print package 1.1
- 11:38 AM Changeset [2477] by
- Preparing for future release MeV launcher 1.12
- 11:34 AM Milestone MeV Launcher 1.11 completed
- For more information see the [wiki:net.sf.basedb.mev MEV Launcher …
- 11:29 AM net.sf.basedb.mev edited by
- Released MeV Launcher 1.11 (diff)
- 11:26 AM Changeset [2476] by
- Tagging Mev launcher 1.11
- 11:25 AM Changeset [2475] by
- Preparing to release MEV launvher 1.11
- 11:21 AM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2474]) Refs #592. Lab environment extension updated in XML file …
- 11:21 AM Changeset [2474] by
- Refs #592. Lab environment extension updated in XML file …
- 11:20 AM Changeset [2473] by
- Preparing for future release Ftp server 1.4
- 11:19 AM Milestone FTP Server v1.3 completed
- For more information see the [wiki:net.sf.basedb.ftp FTP Server …
- 11:18 AM net.sf.basedb.ftp edited by
- Released Ftp server 1.3 (diff)
- 11:16 AM Changeset [2472] by
- Tagging Ftp server 1.3
- 11:15 AM Changeset [2471] by
- Preparing to release Ftp server 1.3
- 11:13 AM Changeset [2470] by
- Preparing for future release example code 1.7
- 11:12 AM Milestone Example code v1.6 completed
- For more information see [wiki:net.sf.basedb.examplecode Example code …
- 11:11 AM net.sf.basedb.examplecode edited by
- Released exemple code 1.6 (diff)
- 10:03 AM Changeset [2469] by
- Tagging example code 1.6
- 10:01 AM Changeset [2468] by
- Preparing to release example code 1.6
Jun 3, 2014:
- 8:22 AM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2467]) Refs #592. Lab environment extension updated for …
- 8:22 AM Changeset [2467] by
- Refs #592. Lab environment extension updated for displaying lab …
Jun 2, 2014:
- 4:16 PM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2466]) Refs #592. Lab environment extension updated to report an …
- 4:16 PM Changeset [2466] by
- Refs #592. Lab environment extension updated to report an alarm for …
- 4:10 PM Ticket #592 (Lab environment extension improved report routines) updated by
- Design update of alarm blocking: An alarm can be reported either when …
- 1:04 PM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2465]) Refs #592. Lab environment extension updated for weekly …
- 1:04 PM Changeset [2465] by
- Refs #592. Lab environment extension updated for weekly and overview …
- 1:01 PM Ticket #592 (Lab environment extension improved report routines) updated by
- Design update of lab environment weekly and overview display reports: …
- 10:02 AM Ticket #547 (Start Demux and Merge) updated by
- (In [2464]) References #547: Start Demux and Merge Do not set …
- 10:02 AM Changeset [2464] by
- References #547: Start Demux and Merge Do not set TILE_LIMIT for …
- 9:59 AM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2463]) Refs #592. Lab environment extension updated to support …
- 9:59 AM Changeset [2463] by
- Refs #592. Lab environment extension updated to support display of lab …
- 9:53 AM Ticket #592 (Lab environment extension improved report routines) updated by
- Design update to support display of lab environment data for a single …
May 28, 2014:
- 7:24 AM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2462]) Refs #592. Lab environment extension updated with a copy …
- 7:24 AM Changeset [2462] by
- Refs #592. Lab environment extension updated with a copy of the Reggie …
May 26, 2014:
- 1:41 PM Ticket #598 (Pooling wizard can't show flag and warning at the same time) closed by
- fixed: (In [2461]) Fixes #598: Pooling wizard can't show flag and warning at …
- 1:41 PM Changeset [2461] by
- Fixes #598: Pooling wizard can't show flag and warning at the same …
- 1:09 PM Ticket #598 (Pooling wizard can't show flag and warning at the same time) created by
- Libraries that get a warning due to low concentration or high adapter …
- 9:33 AM Ticket #593 (Start masking and alignment) updated by
- (In [2460]) References #593: Start masking and alignment Improved …
- 9:32 AM Changeset [2460] by
- References #593: Start masking and alignment Improved error handling …
- 9:08 AM Ticket #548 (Register Demux and Merge as ended) updated by
- (In [2459]) References #548: Register Demux and Merge as ended Exit …
- 9:08 AM Changeset [2459] by
- References #548: Register Demux and Merge as ended Exit script if the …
May 23, 2014:
- 1:44 PM Ticket #548 (Register Demux and Merge as ended) updated by
- (In [2458]) References #548: Register Demux and Merge as ended …
- 1:44 PM Changeset [2458] by
- References #548: Register Demux and Merge as ended Display failed …
- 1:21 PM Ticket #547 (Start Demux and Merge) updated by
- (In [2457]) References #547: Start Demux and Merge Get rid of …
- 1:21 PM Changeset [2457] by
- References #547: Start Demux and Merge Get rid of problematic …
- 1:11 PM Ticket #547 (Start Demux and Merge) updated by
- (In [2456]) References #547: Start Demux and Merge Trim whitespace …
- 1:11 PM Changeset [2456] by
- References #547: Start Demux and Merge Trim whitespace values from …
- 1:08 PM Ticket #547 (Start Demux and Merge) updated by
- (In [2455]) References #547: Start Demux and Merge Avoid 'find' …
- 1:08 PM Changeset [2455] by
- References #547: Start Demux and Merge Avoid 'find' command to choke …
- 11:28 AM Changeset [2454] by
- Merging Reggie 2.15.2 to the trunk.
- 10:56 AM Milestone Reggie v2.15.2 completed
- Adapter peak information in library registration and pooling wizards. …
- 10:54 AM net.sf.basedb.reggie edited by
- Released Reggie 2.15.2 (diff)
- 10:53 AM Changeset [2453] by
- Tagging Reggie 2.15.2
- 10:52 AM Changeset [2452] by
- Preparing to release Reggie 2.15.2
- 10:50 AM net.sf.basedb.reggie/notes2152 created by
- Adding updated notes for Reggie 2.15.2
- 10:44 AM Ticket #596 (Import adapter peak information when registering libraries) closed by
- fixed
- 10:44 AM Ticket #597 (Display adapter peak fraction in the pooling wizard) closed by
- fixed
- 9:54 AM Ticket #597 (Display adapter peak fraction in the pooling wizard) updated by
- (In [2451]) References #597: Display adapter peak fraction in the …
- 9:54 AM Changeset [2451] by
- References #597: Display adapter peak fraction in the pooling wizard …
- 9:43 AM Ticket #597 (Display adapter peak fraction in the pooling wizard) updated by
- (In [2450]) References #597: Display adapter peak fraction in the …
- 9:43 AM Changeset [2450] by
- References #597: Display adapter peak fraction in the pooling wizard …
May 22, 2014:
- 4:05 PM Ticket #596 (Import adapter peak information when registering libraries) updated by
- (In [2449]) References #596: Import adapter peak information when …
- 4:05 PM Changeset [2449] by
- References #596: Import adapter peak information when registering …
- 2:08 PM Ticket #596 (Import adapter peak information when registering libraries) updated by
- (In [2448]) References #596: Import adapter peak information when …
- 2:08 PM Changeset [2448] by
- References #596: Import adapter peak information when registering …
- 12:59 PM Ticket #596 (Import adapter peak information when registering libraries) updated by
- (In [2447]) References #596: Import adapter peak information when …
- 12:59 PM Changeset [2447] by
- References #596: Import adapter peak information when registering …
- 12:38 PM Ticket #596 (Import adapter peak information when registering libraries) updated by
-
Status changed
- 12:34 PM Ticket #547 (Start Demux and Merge) updated by
- (In [2446]) References #547: Start Demux and Merge Adding 'rm …
- 12:34 PM Changeset [2446] by
- References #547: Start Demux and Merge Adding 'rm <tmp-folder>' back …
- 12:31 PM Ticket #596 (Import adapter peak information when registering libraries) updated by
-
Description changed
- 12:31 PM Ticket #597 (Display adapter peak fraction in the pooling wizard) created by
- This is related to #596. The pooling wizard should display the …
- 12:00 PM Ticket #596 (Import adapter peak information when registering libraries) created by
- The library registration wizard currently import values for the …
- 11:36 AM Ticket #547 (Start Demux and Merge) updated by
- (In [2445]) References #547: Start Demux and Merge Use 'getFile' …
- 11:36 AM Changeset [2445] by
- References #547: Start Demux and Merge Use 'getFile' instead of …
- 10:29 AM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2444]) Refs #592. Lab environment extension updated to hopefully …
- 10:29 AM Changeset [2444] by
- Refs #592. Lab environment extension updated to hopefully make e-mail …
- 10:27 AM Ticket #547 (Start Demux and Merge) updated by
- (In [2443]) References #547: Start Demux and Merge Generate .gz …
- 10:27 AM Changeset [2443] by
- References #547: Start Demux and Merge Generate .gz compressed files …
- 8:48 AM Changeset [2442] by
- Check enironment variable PicardMemory for amount of memory to give to …
May 20, 2014:
- 11:43 AM Ticket #547 (Start Demux and Merge) updated by
- (In [2441]) References #547: Start Demux and Merge * Do not start …
- 11:43 AM Changeset [2441] by
- References #547: Start Demux and Merge * Do not start multiple demux …
May 19, 2014:
- 3:37 PM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2440]) Refs #592. Lab environment extension updated by …
- 3:37 PM Changeset [2440] by
- Refs #592. Lab environment extension updated by associating main "Lab …
- 1:45 PM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2439]) Refs #592. Lab environment extension updated in JSP files …
- 1:45 PM Changeset [2439] by
- Refs #592. Lab environment extension updated in JSP files to have more …
- 1:15 PM Ticket #548 (Register Demux and Merge as ended) updated by
- (In [2438]) References #548: Register Demux and Merge as ended Remove …
- 1:15 PM Changeset [2438] by
- References #548: Register Demux and Merge as ended Remove job folder …
- 12:55 PM Ticket #548 (Register Demux and Merge as ended) updated by
- (In [2437]) References #548: Register Demux and Merge as ended …
- 12:55 PM Changeset [2437] by
- References #548: Register Demux and Merge as ended Display demux …
- 11:00 AM Ticket #547 (Start Demux and Merge) updated by
- (In [2436]) References #547: Start Demux and Merge Do not skip last …
- 11:00 AM Changeset [2436] by
- References #547: Start Demux and Merge Do not skip last base in …
- 10:54 AM Ticket #547 (Start Demux and Merge) updated by
- (In [2435]) References #547: Start Demux and Merge Saving …
- 10:54 AM Changeset [2435] by
- References #547: Start Demux and Merge Saving demultiplex_metrics …
- 9:11 AM Ticket #547 (Start Demux and Merge) updated by
- (In [2434]) References #547: Start Demux and Merge Adding …
- 9:11 AM Changeset [2434] by
- References #547: Start Demux and Merge Adding PF_NNNN_PCT, …
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