Timeline



Apr 22, 2014:

2:09 PM Changeset [2370] by Nicklas Nordborg
References #571: Update Reggie to new scripting pattern Fixed on the …
9:47 AM Changeset [2369] by Nicklas Nordborg
References #571: Update Reggie to new scripting pattern Fixed on the …

Apr 17, 2014:

12:25 PM Ticket #579 (Store serial number of sequencers as annotations on hardware items) closed by Nicklas Nordborg
fixed: (In [2368]) Fixes #579: Store serial number of sequencers as …
12:24 PM Changeset [2368] by Nicklas Nordborg
Fixes #579: Store serial number of sequencers as annotations on …
11:12 AM Changeset [2367] by Nicklas Nordborg
References #548: Register Demux and Merge as ended Submit …

Apr 16, 2014:

2:52 PM Changeset [2366] by Nicklas Nordborg
References #548: Register Demux and Merge as ended Display number of …
2:51 PM Changeset [2365] by Nicklas Nordborg
References #547: Start Demux and Merge Generated sript for demux now …

Apr 15, 2014:

2:41 PM Changeset [2364] by Nicklas Nordborg
References #548: Register Demux and Merge as ended Started with the …

Apr 14, 2014:

2:21 PM Changeset [2363] by Nicklas Nordborg
References #547: Start Demux and Merge Cleaning up a bit.
1:24 PM Changeset [2362] by Nicklas Nordborg
References #547: Start Demux and Merge Added ScriptBuilder for more …
10:32 AM Changeset [2361] by Nicklas Nordborg
References #547: Start Demux and Merge Implemented primitive progress …

Apr 11, 2014:

3:10 PM Changeset [2360] by olle
Refs #592. Outermost Ant build file build.xml and file …
2:39 PM Ticket #592 (Lab environment extension improved report routines) created by olle
The lab environment extension should have improved report routines, …
2:19 PM Ticket #529 (Retrieve and store temperature and humidity measurements) closed by olle
fixed: Ticket closed as a first version of the lab environment extension has …
2:09 PM Milestone LabEnv v1.0 completed
The first release of the LabEnv extension to BASE, a package allowing …
2:02 PM net.sf.basedb.labenv edited by olle
Revision set to 2358 and Date to 2014-04-11 (diff)
1:50 PM Changeset [2359] by Nicklas Nordborg
References #547: Start Demux and Merge Added call to …
1:50 PM labenv-1.0.tar.gz attached to net.sf.basedb.labenv by olle
Exchnaged package labenv-1.0.tar.gz from trunk for package from tags/1.0
12:41 PM Changeset [2358] by olle
Tagging release 1.0
12:33 PM net.sf.basedb.labenv edited by olle
Filesize for labenv-1.0.tar.gz set to 3.9 MB (diff)
12:25 PM PluginDownload edited by olle
Added entry for LabEnv 1.0 extension to table of BASE 3 compatible … (diff)
12:10 PM Changeset [2357] by olle
Refs #529. Configuration file META-INF/extensions.xml updated by …
10:43 AM Changeset [2356] by Nicklas Nordborg
References #547: Start Demux and Merge Create a single job on the …

Apr 10, 2014:

1:47 PM Changeset [2355] by Nicklas Nordborg
Removing branches/ssh-test from Reggie since it is now implemented in …
1:37 PM Changeset [2354] by Nicklas Nordborg
References #529. Add eclipse project and classpath file and svn:ignore …
11:28 AM Changeset [2353] by olle
Refs #529. Lab environment extension updated in text file readme.txt
11:11 AM Changeset [2352] by olle
Refs #529. Lab environment extension updated when exporting …
10:59 AM Ticket #539 (Set "Disable log" flag on some annotation types) closed by Nicklas Nordborg
fixed: (In [2351]) Fixes #539: Set "Disable log" flag on some annotation types
10:59 AM Changeset [2351] by Nicklas Nordborg
Fixes #539: Set "Disable log" flag on some annotation types
10:49 AM Ticket #515 (Store sequence for barcodes as annotations on tags) closed by Nicklas Nordborg
fixed: (In [2350]) Fixes #515: Store sequence for barcodes as annotations on tags
10:49 AM Changeset [2350] by Nicklas Nordborg
Fixes #515: Store sequence for barcodes as annotations on tags
10:33 AM Changeset [2349] by olle
Refs #529. Lab environment extension updated to only output 2 decimals …
10:00 AM Changeset [2348] by Nicklas Nordborg
References #547: Start Demux and Merge FlowCellSampleSheetExporter
9:52 AM Changeset [2347] by olle
Refs #529. Lab environment extension updated in text file README: …
9:38 AM Changeset [2346] by olle
Refs #529. Lab environment extension updated in outermost Ant build …

Apr 9, 2014:

2:56 PM Changeset [2345] by olle
Refs #529. Lab environment extension updated by moving JAR file …
1:25 PM Changeset [2344] by Nicklas Nordborg
Merge 2.15-stable from rev 2261 (2.15-beta-2) to rev 2343 (2.15) back …
1:19 PM Changeset [2343] by Nicklas Nordborg
Remove HiSeqPosition annotation physical bioassay since it should be …
11:49 AM Changeset [2342] by olle
Refs #529. Lab environment extension updated by replacing all …
9:28 AM Changeset [2341] by olle
Refs #529. JSP files labsensorinfo.jsp, …
8:55 AM Milestone Reggie v2.15 completed
Redesign clustering and sequencing startup wizard to better match …
8:54 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 2.15 (diff)
8:53 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 2.15 (diff)
8:51 AM reggie-2.15.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 2.15
8:51 AM Changeset [2340] by Nicklas Nordborg
Tagging Reggie 2.15
8:50 AM Changeset [2339] by Nicklas Nordborg
Preparing to release Reggie 2.15
8:34 AM Changeset [2338] by olle
Refs #529. Class/file LabEnvService.java in …

Apr 8, 2014:

4:09 PM Changeset [2337] by olle
Refs #529. Lab environment extension updated to use default values …
3:47 PM Changeset [2336] by Nicklas Nordborg
References #533: Add secondary analysis section to Reggie Last …
2:24 PM Changeset [2335] by Nicklas Nordborg
Removing unused import.
2:23 PM Ticket #591 (Add support for new assay type to Caliper run parameters export) closed by Nicklas Nordborg
fixed: (In [2334]) Fixes #591: Add support for new assay type to Caliper run …
2:23 PM Changeset [2334] by Nicklas Nordborg
Fixes #591: Add support for new assay type to Caliper run parameters export
2:08 PM Ticket #591 (Add support for new assay type to Caliper run parameters export) created by Nicklas Nordborg
The library preparation procedure now uses a new assay type: HT DNA …
1:20 PM Changeset [2333] by Nicklas Nordborg
References #547: Start Demux and Merge Export and upload sample sheet …
11:55 AM Changeset [2332] by olle
Refs #529. Lab environment extension updated in file MANIFEST.MF in …
11:42 AM Changeset [2331] by olle
Refs #529. Class/file LabEnvironmentConfiguration in …
11:16 AM Changeset [2330] by olle
Refs #529. Class/file LabEnvironmentConfiguration in …
10:51 AM Changeset [2329] by olle
Refs #529. Lab environment extension updated in classes forwarding …
9:54 AM Changeset [2328] by olle
Refs #529. Lab environment extension updated to increase similarity of …
9:31 AM Changeset [2327] by Nicklas Nordborg
References #578: Move to BASE 3.3 Updating the installation wizard …

Apr 7, 2014:

4:31 PM Changeset [2326] by olle
Refs #529. Lab environment extension updated to report in the BASE …
3:27 PM Changeset [2325] by Nicklas Nordborg
References #533: Add secondary analysis section to Reggie Waiting 10 …
3:19 PM Changeset [2324] by Nicklas Nordborg
References #533: Add secondary analysis section to Reggie Creating a …
8:41 AM Changeset [2323] by Nicklas Nordborg
References #533: Add secondary analysis section to Reggie Adding …
8:26 AM Ticket #590 (Couting number of items on the index page block interactions) closed by Nicklas Nordborg
fixed: (In [2322]) Fixes #590: Counting number of items on the index page …
8:26 AM Changeset [2322] by Nicklas Nordborg
Fixes #590: Counting number of items on the index page block interactions
8:25 AM Ticket #590 (Couting number of items on the index page block interactions) created by Nicklas Nordborg
The comment when the counters were added in #494 stated that "The …

Apr 4, 2014:

2:15 PM Changeset [2321] by olle
Refs #529. Lab environment extension updated to look directly for …
1:19 PM Changeset [2320] by Nicklas Nordborg
References #547: Start Demux and Merge Added option to select Open …
12:46 PM Changeset [2319] by Nicklas Nordborg
Fixed incorrect link in release document.
11:53 AM Changeset [2318] by olle
Refs #529. Configuration file labenv-config.xml included in the …
11:43 AM Changeset [2317] by olle
Refs #529. First version of text files LICENSE, README, and …
10:04 AM Changeset [2316] by Nicklas Nordborg
References #578: Move to BASE 3.3 Fixes setFatalError() method …
10:02 AM net.sf.basedb.labenv edited by olle
(diff)
9:48 AM Changeset [2315] by olle
Refs #529. Update of JAR files included for compiling in directory …
9:37 AM Changeset [2314] by olle
Refs #529. Update ensuring that JAR-files not included with the BASE …
9:14 AM Changeset [2313] by olle
Refs #529. Update of lab environment service class package: 1. …
8:35 AM Ticket #589 (FTP service should install client item when service is started first time) closed by Nicklas Nordborg
fixed: (In [2312]) Fixes #589: FTP service should install client item when …
8:35 AM Changeset [2312] by Nicklas Nordborg
Fixes #589: FTP service should install client item when service is …
7:54 AM Ticket #589 (FTP service should install client item when service is started first time) created by Nicklas Nordborg
Normally, when logging in via FTP, the session is associated with the …

Apr 3, 2014:

3:43 PM Changeset [2311] by Nicklas Nordborg
References #562: Re-design clustering and sequencing startup wizards …
1:54 PM Changeset [2310] by Nicklas Nordborg
References #533: Add secondary analysis section to Reggie Appending …
11:06 AM Changeset [2309] by Nicklas Nordborg
References #533: Add secondary analysis section to Reggie Using the …
10:00 AM Changeset [2308] by olle
Refs #529. Class/file ReportTableUtil.java in …
9:34 AM Changeset [2307] by olle
Refs #529. Class/file ReportTableUtil.java in …

Apr 2, 2014:

4:29 PM Changeset [2306] by olle
Refs #529. Commit of directory labenv/resources/images/ with small …
1:53 PM Changeset [2305] by Nicklas Nordborg
References #533: Add secondary analysis section to Reggie Generating …
1:41 PM Changeset [2304] by olle
Refs #529. BASE jar-files removed from directory …
11:46 AM Changeset [2303] by olle
Refs #529. Initial check-in of source code for lab environment BASE …

Apr 1, 2014:

11:07 AM Changeset [2302] by Nicklas Nordborg
References #533: Add secondary analysis section to Reggie Get job …
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