Timeline



Feb 7, 2014:

1:00 PM Ticket #572 (Use different barcode for pools from the same plate) created by Nicklas Nordborg
A pool typically consist of 21 samples of the 24 that make up 3 …
10:37 AM Changeset [2216] by Nicklas Nordborg
References #540: Make sure Reggie works with BASE 3.3 Include …
8:11 AM Changeset [2215] by Nicklas Nordborg
References #540: Make sure Reggie works with BASE 3.3 Use …

Feb 6, 2014:

3:28 PM Ticket #571 (Update Reggie to new scripting pattern (first step)) created by Nicklas Nordborg
Similar to #564, but Reggie contains a lot more script than any of the …
1:27 PM Ticket #570 (Installation wizard incorrectly display '0 more...') closed by Nicklas Nordborg
fixed: (In [2214]) Fixes #570: Installation wizard incorrectly display '0 more...'
1:27 PM Changeset [2214] by Nicklas Nordborg
Fixes #570: Installation wizard incorrectly display '0 more...'
1:27 PM Ticket #570 (Installation wizard incorrectly display '0 more...') created by Nicklas Nordborg
If all items in a section in the installation wizard has an error they …

Feb 4, 2014:

2:19 PM Ticket #569 (Sample list export for missing consent data) closed by olle
fixed: Ticket closed since the requested functionality has been added.
2:16 PM Changeset [2213] by olle
Refs #569. Java servlet ExportServlet.java in …
2:06 PM Changeset [2212] by olle
Refs #569. First version of sample list export for missing consent …
1:39 PM Ticket #569 (Sample list export for missing consent data) created by olle
It should be possible to export a sample list for missing consent …

Feb 3, 2014:

11:47 AM Ticket #568 (Update to MEV 4.9) closed by Nicklas Nordborg
fixed: (In [2211]) Fixes #568: Update to MEV 4.9 Changed to MeV 4.9. There …
11:47 AM Changeset [2211] by Nicklas Nordborg
Fixes #568: Update to MEV 4.9 Changed to MeV 4.9. There was an issue …
9:30 AM Ticket #565 (Missing sample data report should support sample list export) closed by olle
fixed: Ticket closed since the requested functionality has been added.
9:29 AM Ticket #563 (Report servlet code should be refactored for blood sample filter) closed by olle
fixed: Ticket closed since the described code has been refactored.
9:13 AM Changeset [2210] by olle
Ref #565. Missing data sample list export updated to move the …
8:37 AM Ticket #568 (Update to MEV 4.9) created by Nicklas Nordborg
http://www.tm4.org/mev.html
8:36 AM Ticket #567 (Update MEV extension to new scripting pattern) closed by Nicklas Nordborg
fixed: (In [2209]) Fixes #567: Update MEV extension to new scripting pattern
8:36 AM Changeset [2209] by Nicklas Nordborg
Fixes #567: Update MEV extension to new scripting pattern

Jan 31, 2014:

12:46 PM Ticket #567 (Update MEV extension to new scripting pattern) created by Nicklas Nordborg
Similar to #564.
12:44 PM Ticket #566 (Update print extension to new scripting pattern) closed by Nicklas Nordborg
fixed: (In [2208]) Fixes #566: Update print extension to new scripting pattern
12:44 PM Changeset [2208] by Nicklas Nordborg
Fixes #566: Update print extension to new scripting pattern
11:52 AM Ticket #566 (Update print extension to new scripting pattern) created by Nicklas Nordborg
Similar to #564.
11:41 AM Ticket #564 (Update example extensions to new scripting pattern) closed by Nicklas Nordborg
fixed
11:41 AM Changeset [2207] by Nicklas Nordborg
References #564: Update example extensions to new scripting pattern …
10:24 AM Changeset [2206] by olle
Refs #565. Missing sample data report updated with sample list export: …

Jan 30, 2014:

12:22 PM Ticket #565 (Missing sample data report should support sample list export) created by olle
Missing sample data report should support sample list export. An …

Jan 29, 2014:

10:51 AM Changeset [2205] by Nicklas Nordborg
References #564: Update example extensions to new scripting pattern …

Jan 28, 2014:

2:36 PM Changeset [2204] by Nicklas Nordborg
References #564: Update example extensions to new scripting pattern …
1:40 PM Ticket #564 (Update example extensions to new scripting pattern) created by Nicklas Nordborg
The new scripting pattering is to avoid inline event handlers …

Jan 21, 2014:

2:04 PM Changeset [2203] by olle
Refs #563. Refs #505. Java servlet SampleReportServlet.java in …
1:26 PM Ticket #563 (Report servlet code should be refactored for blood sample filter) created by olle
Report servlet code should be refactored for blood sample filter. As …

Jan 20, 2014:

12:43 PM Changeset [2202] by Nicklas Nordborg
References #562: Re-design clustering and sequencing startup wizards …
9:24 AM Changeset [2201] by Nicklas Nordborg
References #562: Re-design clustering and sequencing startup wizards …

Jan 17, 2014:

1:54 PM Ticket #561 (Error icons after successful registration of caliper RNAQC results) closed by Nicklas Nordborg
fixed: (In [2200]) Fixes #561: Error icons after successful registration of …
1:54 PM Changeset [2200] by Nicklas Nordborg
Fixes #561: Error icons after successful registration of caliper RNAQC …
1:37 PM Ticket #562 (Re-design clustering and sequencing startup wizards) created by Nicklas Nordborg
While working on the secondary analysis wizards (#545 and #546) it …
1:22 PM Ticket #561 (Error icons after successful registration of caliper RNAQC results) created by Nicklas Nordborg
Seems to be similar to #509. First file selection gives error …
9:27 AM Ticket #560 (Use annotations on Histology work list to indicate progress) created by Nicklas Nordborg
This is related to #557 which solved the problem with deleting …
9:19 AM Ticket #559 (Download HE glass labels after registration of paraffin blocks) closed by Nicklas Nordborg
fixed: (In [2199]) Fixes #559: Download HE glass labels after registration of …
9:19 AM Changeset [2199] by Nicklas Nordborg
Fixes #559: Download HE glass labels after registration of paraffin …

Jan 16, 2014:

11:26 AM Ticket #559 (Download HE glass labels after registration of paraffin blocks) created by Nicklas Nordborg
The 'Create lab tracking protocol for FFPE/HE' has two functions. It's …

Jan 15, 2014:

9:33 AM Changeset [2198] by Nicklas Nordborg
References #545: Register sequencing as ended Added some information …

Jan 14, 2014:

1:02 PM Changeset [2197] by Nicklas Nordborg
References #545: Register sequencing as ended The wizard should now …

Jan 13, 2014:

2:36 PM Changeset [2196] by Nicklas Nordborg
References #533: Add secondary analysis section to Reggie Re-arranged …
12:34 PM PluginDownload edited by Nicklas Nordborg
Released Reggie 2.14 (diff)
12:33 PM Changeset [2195] by Nicklas Nordborg
Preparing for future release Reggie 2.15
12:31 PM Changeset [2194] by Nicklas Nordborg
Creating bugfix branch for Reggie 2.14
12:30 PM Milestone Reggie v2.14 completed
See Reggie extension page for more information.
12:30 PM Ticket #555 (Specify amount to use from *.dil items in pool) closed by Nicklas Nordborg
fixed
12:30 PM Ticket #527 (Implement manual pooled library selection) closed by Nicklas Nordborg
fixed
12:30 PM Ticket #489 (Histology scoring wizard) closed by Nicklas Nordborg
fixed
12:29 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 2.14 (diff)
12:27 PM reggie-2.14.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 2.14
12:26 PM Changeset [2193] by Nicklas Nordborg
Tagging Reggie 2.14
12:25 PM Changeset [2192] by Nicklas Nordborg
Preparing to release Reggie 2.14
11:49 AM Ticket #558 (Remove Operator annotation) closed by Nicklas Nordborg
fixed: (In [2191]) Fixes #558: Remove Operator annotation
11:49 AM Changeset [2191] by Nicklas Nordborg
Fixes #558: Remove Operator annotation
11:44 AM Ticket #558 (Remove Operator annotation) created by Nicklas Nordborg
The Operator annotation has historically been used as a generic …
11:13 AM Ticket #557 (Don't remove histology work lists after registration) closed by Nicklas Nordborg
fixed: (In [2190]) Fixes #557: Don't remove histology work lists after …
11:13 AM Changeset [2190] by Nicklas Nordborg
Fixes #557: Don't remove histology work lists after registration
9:36 AM Ticket #557 (Don't remove histology work lists after registration) created by Nicklas Nordborg
This causes permission problems since users are normally not allowed …
9:11 AM Changeset [2189] by Nicklas Nordborg
References #556: Sample sheet exporter should use ClusterOperator?

Jan 10, 2014:

2:31 PM Changeset [2188] by Nicklas Nordborg
References #555: Specify amount to use from *.dil items in pool …
1:02 PM Ticket #556 (Sample sheet exporter should use ClusterOperator annotation for the ...) closed by Nicklas Nordborg
fixed: (In [2187]) Fixes #556: Sample sheet exporter should use …
1:02 PM Changeset [2187] by Nicklas Nordborg
Fixes #556: Sample sheet exporter should use ClusterOperator?
12:56 PM Changeset [2186] by Nicklas Nordborg
References #555: Specify amount to use from *.dil items in pool The …
10:35 AM Ticket #556 (Sample sheet exporter should use ClusterOperator annotation for the ...) created by Nicklas Nordborg
Originally, the cluster operator for a flow cell was stored in the …
8:17 AM Ticket #555 (Specify amount to use from *.dil items in pool) created by Nicklas Nordborg
When dynamic mixing strategy is used for a pool, libraries which need …
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