Timeline



Feb 7, 2014:

1:00 PM Ticket #572 (Use different barcode for pools from the same plate) created by Nicklas Nordborg
A pool typically consist of 21 samples of the 24 that make up 3 …
10:37 AM Ticket #540 (Make sure Reggie works with BASE 3.3) updated by Nicklas Nordborg
(In [2216]) References #540: Make sure Reggie works with BASE 3.3 …
10:37 AM Changeset [2216] by Nicklas Nordborg
References #540: Make sure Reggie works with BASE 3.3 Include …
8:11 AM Ticket #540 (Make sure Reggie works with BASE 3.3) updated by Nicklas Nordborg
(In [2215]) References #540: Make sure Reggie works with BASE 3.3 Use …
8:11 AM Changeset [2215] by Nicklas Nordborg
References #540: Make sure Reggie works with BASE 3.3 Use …

Feb 6, 2014:

3:29 PM Ticket #540 (Make sure Reggie works with BASE 3.3) updated by Nicklas Nordborg
Description changed
3:28 PM Ticket #571 (Update Reggie to new scripting pattern (first step)) created by Nicklas Nordborg
Similar to #564, but Reggie contains a lot more script than any of the …
3:03 PM Ticket #540 (Make sure Reggie works with BASE 3.3) updated by Nicklas Nordborg
Status, Description, Milestone changed
1:27 PM Ticket #570 (Installation wizard incorrectly display '0 more...') closed by Nicklas Nordborg
fixed: (In [2214]) Fixes #570: Installation wizard incorrectly display '0 more...'
1:27 PM Changeset [2214] by Nicklas Nordborg
Fixes #570: Installation wizard incorrectly display '0 more...'
1:27 PM Ticket #570 (Installation wizard incorrectly display '0 more...') created by Nicklas Nordborg
If all items in a section in the installation wizard has an error they …

Feb 4, 2014:

2:19 PM Ticket #569 (Sample list export for missing consent data) closed by olle
fixed: Ticket closed since the requested functionality has been added.
2:16 PM Ticket #569 (Sample list export for missing consent data) updated by olle
(In [2213]) Refs #569. Java servlet ExportServlet.java in …
2:16 PM Changeset [2213] by olle
Refs #569. Java servlet ExportServlet.java in …
2:06 PM Ticket #569 (Sample list export for missing consent data) updated by olle
(In [2212]) Refs #569. First version of sample list export for missing …
2:06 PM Changeset [2212] by olle
Refs #569. First version of sample list export for missing consent …
1:46 PM Ticket #569 (Sample list export for missing consent data) updated by olle
Traceability note: * The consent count report was introduced in …
1:39 PM Ticket #569 (Sample list export for missing consent data) updated by olle
Status changed
Ticket accepted.
1:39 PM Ticket #569 (Sample list export for missing consent data) created by olle
It should be possible to export a sample list for missing consent …

Feb 3, 2014:

11:47 AM Ticket #568 (Update to MEV 4.9) closed by Nicklas Nordborg
fixed: (In [2211]) Fixes #568: Update to MEV 4.9 Changed to MeV 4.9. There …
11:47 AM Changeset [2211] by Nicklas Nordborg
Fixes #568: Update to MEV 4.9 Changed to MeV 4.9. There was an issue …
9:30 AM Ticket #565 (Missing sample data report should support sample list export) closed by olle
fixed: Ticket closed since the requested functionality has been added.
9:29 AM Ticket #563 (Report servlet code should be refactored for blood sample filter) closed by olle
fixed: Ticket closed since the described code has been refactored.
9:23 AM Ticket #565 (Missing sample data report should support sample list export) updated by olle
(In [2210]) Refs #565. …
9:13 AM Changeset [2210] by olle
Ref #565. Missing data sample list export updated to move the …
8:37 AM Ticket #568 (Update to MEV 4.9) created by Nicklas Nordborg
http://www.tm4.org/mev.html
8:37 AM Ticket #565 (Missing sample data report should support sample list export) updated by olle
Design update: * It was decided to move the new functionality to a …
8:36 AM Ticket #567 (Update MEV extension to new scripting pattern) closed by Nicklas Nordborg
fixed: (In [2209]) Fixes #567: Update MEV extension to new scripting pattern
8:36 AM Changeset [2209] by Nicklas Nordborg
Fixes #567: Update MEV extension to new scripting pattern

Jan 31, 2014:

3:19 PM Ticket #565 (Missing sample data report should support sample list export) updated by olle
Description changed
Ticket description updated by fixing typo.
12:46 PM Ticket #567 (Update MEV extension to new scripting pattern) created by Nicklas Nordborg
Similar to #564.
12:44 PM Ticket #566 (Update print extension to new scripting pattern) closed by Nicklas Nordborg
fixed: (In [2208]) Fixes #566: Update print extension to new scripting pattern
12:44 PM Changeset [2208] by Nicklas Nordborg
Fixes #566: Update print extension to new scripting pattern
11:52 AM Ticket #566 (Update print extension to new scripting pattern) created by Nicklas Nordborg
Similar to #564.
11:41 AM Ticket #564 (Update example extensions to new scripting pattern) closed by Nicklas Nordborg
fixed
11:41 AM Ticket #564 (Update example extensions to new scripting pattern) updated by Nicklas Nordborg
(In [2207]) References #564: Update example extensions to new …
11:41 AM Changeset [2207] by Nicklas Nordborg
References #564: Update example extensions to new scripting pattern …
10:24 AM Ticket #565 (Missing sample data report should support sample list export) updated by olle
(In [2206]) Refs #565. Missing sample data report updated with sample …
10:24 AM Changeset [2206] by olle
Refs #565. Missing sample data report updated with sample list export: …
10:01 AM Ticket #565 (Missing sample data report should support sample list export) updated by olle
Design discussion. 1. In the last step before a report is generated, …
8:31 AM Ticket #565 (Missing sample data report should support sample list export) updated by olle
Description changed
Ticket description updated regarding values to report and their order. …

Jan 30, 2014:

12:36 PM Ticket #565 (Missing sample data report should support sample list export) updated by olle
Traceability note: * The missing sample data report was introduced …
12:22 PM Ticket #565 (Missing sample data report should support sample list export) updated by olle
Status changed
Ticket accepted.
12:22 PM Ticket #565 (Missing sample data report should support sample list export) created by olle
Missing sample data report should support sample list export. An …

Jan 29, 2014:

10:51 AM Ticket #564 (Update example extensions to new scripting pattern) updated by Nicklas Nordborg
(In [2205]) References #564: Update example extensions to new …
10:51 AM Changeset [2205] by Nicklas Nordborg
References #564: Update example extensions to new scripting pattern …

Jan 28, 2014:

2:36 PM Ticket #564 (Update example extensions to new scripting pattern) updated by Nicklas Nordborg
(In [2204]) References #564: Update example extensions to new …
2:36 PM Changeset [2204] by Nicklas Nordborg
References #564: Update example extensions to new scripting pattern …
1:40 PM Ticket #564 (Update example extensions to new scripting pattern) updated by Nicklas Nordborg
Status changed
1:40 PM Ticket #564 (Update example extensions to new scripting pattern) created by Nicklas Nordborg
The new scripting pattering is to avoid inline event handlers …

Jan 21, 2014:

2:04 PM Tickets #505,​563 batch updated by olle
(In [2203]) Refs #563. Refs #505. Java servlet …
2:04 PM Changeset [2203] by olle
Refs #563. Refs #505. Java servlet SampleReportServlet.java in …
1:55 PM Ticket #563 (Report servlet code should be refactored for blood sample filter) updated by olle
Design description. Updates in java servlet …
1:35 PM Ticket #563 (Report servlet code should be refactored for blood sample filter) updated by olle
Traceability note: * The blood sample filter was introduced in …
1:26 PM Ticket #563 (Report servlet code should be refactored for blood sample filter) updated by olle
Status changed
Ticket accepted.
1:26 PM Ticket #563 (Report servlet code should be refactored for blood sample filter) created by olle
Report servlet code should be refactored for blood sample filter. As …

Jan 20, 2014:

12:43 PM Ticket #562 (Re-design clustering and sequencing startup wizards) updated by Nicklas Nordborg
(In [2202]) References #562: Re-design clustering and sequencing …
12:43 PM Changeset [2202] by Nicklas Nordborg
References #562: Re-design clustering and sequencing startup wizards …
9:24 AM Ticket #562 (Re-design clustering and sequencing startup wizards) updated by Nicklas Nordborg
(In [2201]) References #562: Re-design clustering and sequencing …
9:24 AM Changeset [2201] by Nicklas Nordborg
References #562: Re-design clustering and sequencing startup wizards …

Jan 17, 2014:

1:54 PM Ticket #561 (Error icons after successful registration of caliper RNAQC results) closed by Nicklas Nordborg
fixed: (In [2200]) Fixes #561: Error icons after successful registration of …
1:54 PM Changeset [2200] by Nicklas Nordborg
Fixes #561: Error icons after successful registration of caliper RNAQC …
1:43 PM Ticket #562 (Re-design clustering and sequencing startup wizards) updated by Nicklas Nordborg
Status changed
1:37 PM Ticket #562 (Re-design clustering and sequencing startup wizards) created by Nicklas Nordborg
While working on the secondary analysis wizards (#545 and #546) it …
1:22 PM Ticket #561 (Error icons after successful registration of caliper RNAQC results) created by Nicklas Nordborg
Seems to be similar to #509. First file selection gives error …
9:29 AM Ticket #560 (Use annotations on Histology work list to indicate progress) updated by Nicklas Nordborg
Description changed
9:27 AM Ticket #560 (Use annotations on Histology work list to indicate progress) created by Nicklas Nordborg
This is related to #557 which solved the problem with deleting …
9:22 AM Ticket #559 (Download HE glass labels after registration of paraffin blocks) updated by Nicklas Nordborg
Milestone changed
9:19 AM Ticket #559 (Download HE glass labels after registration of paraffin blocks) closed by Nicklas Nordborg
fixed: (In [2199]) Fixes #559: Download HE glass labels after registration of …
9:19 AM Changeset [2199] by Nicklas Nordborg
Fixes #559: Download HE glass labels after registration of paraffin …
8:42 AM Ticket #559 (Download HE glass labels after registration of paraffin blocks) updated by Nicklas Nordborg
Status changed

Jan 16, 2014:

11:26 AM Ticket #559 (Download HE glass labels after registration of paraffin blocks) created by Nicklas Nordborg
The 'Create lab tracking protocol for FFPE/HE' has two functions. It's …

Jan 15, 2014:

9:33 AM Ticket #545 (Register sequencing as ended) updated by Nicklas Nordborg
(In [2198]) References #545: Register sequencing as ended Added some …
9:33 AM Changeset [2198] by Nicklas Nordborg
References #545: Register sequencing as ended Added some information …

Jan 14, 2014:

1:02 PM Ticket #545 (Register sequencing as ended) updated by Nicklas Nordborg
(In [2197]) References #545: Register sequencing as ended The wizard …
1:02 PM Changeset [2197] by Nicklas Nordborg
References #545: Register sequencing as ended The wizard should now …

Jan 13, 2014:

2:36 PM Ticket #533 (Add secondary analysis section to Reggie) updated by Nicklas Nordborg
(In [2196]) References #533: Add secondary analysis section to Reggie …
2:36 PM Changeset [2196] by Nicklas Nordborg
References #533: Add secondary analysis section to Reggie Re-arranged …
1:06 PM Ticket #545 (Register sequencing as ended) updated by Nicklas Nordborg
Description changed
12:34 PM PluginDownload edited by Nicklas Nordborg
Released Reggie 2.14 (diff)
12:33 PM Changeset [2195] by Nicklas Nordborg
Preparing for future release Reggie 2.15
12:31 PM Changeset [2194] by Nicklas Nordborg
Creating bugfix branch for Reggie 2.14
12:30 PM Milestone Reggie v2.14 completed
See Reggie extension page for more information.
12:30 PM Ticket #555 (Specify amount to use from *.dil items in pool) closed by Nicklas Nordborg
fixed
12:30 PM Ticket #527 (Implement manual pooled library selection) closed by Nicklas Nordborg
fixed
12:30 PM Ticket #489 (Histology scoring wizard) closed by Nicklas Nordborg
fixed
12:29 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 2.14 (diff)
12:27 PM reggie-2.14.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 2.14
12:26 PM Changeset [2193] by Nicklas Nordborg
Tagging Reggie 2.14
12:25 PM Changeset [2192] by Nicklas Nordborg
Preparing to release Reggie 2.14
11:49 AM Ticket #558 (Remove Operator annotation) closed by Nicklas Nordborg
fixed: (In [2191]) Fixes #558: Remove Operator annotation
11:49 AM Changeset [2191] by Nicklas Nordborg
Fixes #558: Remove Operator annotation
11:44 AM Ticket #558 (Remove Operator annotation) created by Nicklas Nordborg
The Operator annotation has historically been used as a generic …
11:13 AM Ticket #557 (Don't remove histology work lists after registration) closed by Nicklas Nordborg
fixed: (In [2190]) Fixes #557: Don't remove histology work lists after …
11:13 AM Changeset [2190] by Nicklas Nordborg
Fixes #557: Don't remove histology work lists after registration
9:49 AM Ticket #557 (Don't remove histology work lists after registration) updated by Nicklas Nordborg
Status changed
9:36 AM Ticket #557 (Don't remove histology work lists after registration) created by Nicklas Nordborg
This causes permission problems since users are normally not allowed …
9:11 AM Ticket #556 (Sample sheet exporter should use ClusterOperator annotation for the ...) updated by Nicklas Nordborg
(In [2189]) References #556: Sample sheet exporter should use …
9:11 AM Changeset [2189] by Nicklas Nordborg
References #556: Sample sheet exporter should use ClusterOperator

Jan 10, 2014:

2:31 PM Ticket #555 (Specify amount to use from *.dil items in pool) updated by Nicklas Nordborg
(In [2188]) References #555: Specify amount to use from *.dil items in …
2:31 PM Changeset [2188] by Nicklas Nordborg
References #555: Specify amount to use from *.dil items in pool …
1:02 PM Ticket #556 (Sample sheet exporter should use ClusterOperator annotation for the ...) closed by Nicklas Nordborg
fixed: (In [2187]) Fixes #556: Sample sheet exporter should use …
1:02 PM Changeset [2187] by Nicklas Nordborg
Fixes #556: Sample sheet exporter should use ClusterOperator
1:01 PM Ticket #556 (Sample sheet exporter should use ClusterOperator annotation for the ...) updated by Nicklas Nordborg
Status, Summary changed
12:56 PM Ticket #555 (Specify amount to use from *.dil items in pool) updated by Nicklas Nordborg
(In [2186]) References #555: Specify amount to use from *.dil items in …
12:56 PM Changeset [2186] by Nicklas Nordborg
References #555: Specify amount to use from *.dil items in pool The …
10:35 AM Ticket #556 (Sample sheet exporter should use ClusterOperator annotation for the ...) created by Nicklas Nordborg
Originally, the cluster operator for a flow cell was stored in the …
8:17 AM Ticket #555 (Specify amount to use from *.dil items in pool) updated by Nicklas Nordborg
Status changed
8:17 AM Ticket #555 (Specify amount to use from *.dil items in pool) created by Nicklas Nordborg
When dynamic mixing strategy is used for a pool, libraries which need …

Jan 9, 2014:

1:20 PM Ticket #554 (Do not show *.dil items in case summary) closed by Nicklas Nordborg
fixed: (In [2185]) Fixes #554: Do not show *.dil items in case summary A …
1:20 PM Changeset [2185] by Nicklas Nordborg
Fixes #554: Do not show *.dil items in case summary A check is made …
1:15 PM Ticket #554 (Do not show *.dil items in case summary) created by Nicklas Nordborg
Since #503 *.dil items are destroyed once the pooling process is …
1:12 PM Ticket #553 (Set different volume and mixing strategy for pools on a plate) closed by Nicklas Nordborg
fixed: (In [2184]) Fixes #553: Set different volume and mixing strategy for …
1:12 PM Changeset [2184] by Nicklas Nordborg
Fixes #553: Set different volume and mixing strategy for pools on a …

Jan 8, 2014:

10:51 AM Ticket #553 (Set different volume and mixing strategy for pools on a plate) updated by Nicklas Nordborg
Status changed
10:51 AM Ticket #553 (Set different volume and mixing strategy for pools on a plate) created by Nicklas Nordborg
The current implementation allow a target volume and mixing strategy …
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