Timeline



Dec 20, 2013:

2:30 PM Ticket #550 (Overview report should show number of patients having a sample type item) closed by olle
fixed: Ticket closed as the requested functionality has been added.
2:19 PM Changeset [2183] by olle
Refs #550. Overview report updated to allow time period filter: JSP …
12:29 PM Ticket #550 (Overview report should show number of patients having a sample type item) reopened by olle
Ticket reopened as more functionality was desired for the report in …

Dec 13, 2013:

9:31 AM Ticket #552 (PluginUtilities-0.2.jar is in incorrect location) closed by Nicklas Nordborg
fixed: (In [2182]) Fixes #552: PluginUtilities?-0.2.jar is in incorrect …
9:31 AM Changeset [2182] by Nicklas Nordborg
Fixes #552: PluginUtilities?-0.2.jar is in incorrect location Download …
9:00 AM Ticket #552 (PluginUtilities-0.2.jar is in incorrect location) created by Nicklas Nordborg
When creating the normalization-plugins.jar file the …
8:14 AM Changeset [2181] by Nicklas Nordborg
References #551: Add 'install' target to normalizers build script Add …

Dec 12, 2013:

1:58 PM Ticket #551 (Add 'install' target to normalizers build script) closed by Nicklas Nordborg
fixed: (In [2180]) Fixes #551: Add 'install' target to normalizers build script
1:58 PM Changeset [2180] by Nicklas Nordborg
Fixes #551: Add 'install' target to normalizers build script
1:39 PM Ticket #551 (Add 'install' target to normalizers build script) created by Nicklas Nordborg
See #363 and #362 for similar changes in other projects.
1:36 PM Changeset [2179] by Nicklas Nordborg
Update build path for Eclipse to use the BASE 3.2.4 jar files. Related …
11:56 AM PluginDownload edited by Jari Häkkinen
New beta version of net.sf.basedb.normalizers (1.1-beta2) (diff)
11:53 AM net.sf.basedb.normalizers edited by Jari Häkkinen
New beta version of net.sf.basedb.normalizers (1.1-beta2) (diff)
11:45 AM Ticket #550 (Overview report should show number of patients having a sample type item) closed by olle
fixed: Ticket closed as the requested functionality has been added.
11:44 AM normalization-plugins-1.1-beta2.tar.gz.MD5 attached to net.sf.basedb.normalizers by Jari Häkkinen
11:44 AM normalization-plugins-1.1-beta2.tar.gz attached to net.sf.basedb.normalizers by Jari Häkkinen
11:42 AM Changeset [2178] by olle
Refs #550. Overview report updated to show number of patients having a …
11:41 AM Changeset [2177] by Jari Häkkinen
Tagging release 1.1-beta2
11:39 AM Changeset [2176] by Jari Häkkinen
Changes from release procedure and other minor things.
11:37 AM Changeset [2175] by Jari Häkkinen
Added blank line in parameter help string
10:47 AM Ticket #541 (net.sf.basedb.normalizers: Normalizers should store normalized data in ...) closed by olle
fixed: Ticket closed as the requested functionality has been added.
10:47 AM Ticket #228 (net.sf.basedb.normalizers: Normalizers should use ask BASE whether ...) closed by olle
fixed: Ticket closed as the requested functionality has been added.
10:45 AM Changeset [2174] by olle
Refs #541. Refs #228. Outermost Ant build XML file updated by …
10:30 AM Changeset [2173] by Jari Häkkinen
Refs #228 and #541. Improving doc and help string
8:42 AM Ticket #550 (Overview report should show number of patients having a sample type item) created by olle
Overview report should show number of patients having a sample type …

Dec 11, 2013:

1:52 PM Ticket #544 (Re-design lab protocol and registration wizards for histology) closed by Nicklas Nordborg
fixed: (In [2172]) Fixes #544: Re-design lab protocol and registration …
1:52 PM Changeset [2172] by Nicklas Nordborg
Fixes #544: Re-design lab protocol and registration wizards for …
8:40 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 2.14-beta-3 (diff)
8:22 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 2.14-beta-3 (diff)
8:18 AM reggie-2.14-beta-3.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 2.14-beta-3
8:17 AM Changeset [2171] by Nicklas Nordborg
Tagging Reggie 2.14-beta-3
8:17 AM Changeset [2170] by Nicklas Nordborg
Preparing to release Reggie 2.14-beta-3

Dec 10, 2013:

10:00 PM net.sf.basedb.reggie.notes214 edited by Nicklas Nordborg
Clarifying role membership (diff)
9:47 PM Changeset [2169] by Nicklas Nordborg
References #528: Restrict access to some registation wizards There …
3:28 PM Ticket #549 (Installation wizard should share biomaterial lists with WRITE permission) closed by Nicklas Nordborg
fixed: (In [2168]) Fixes #549: Installation wizard should share biomaterial …
3:28 PM Changeset [2168] by Nicklas Nordborg
Fixes #549: Installation wizard should share biomaterial lists with …
3:04 PM Ticket #549 (Installation wizard should share biomaterial lists with WRITE permission) created by Nicklas Nordborg
Releated to #506, but it was not specified that unlike other items …
12:44 PM Ticket #548 (Register Demux and Merge as ended) created by Nicklas Nordborg
Part of #533. This wizard is used to register that demuxing and …
10:59 AM Ticket #547 (Start Demux and Merge) created by Nicklas Nordborg
Part of #533. This wizard is started after confirming a successful …
9:50 AM Changeset [2167] by olle
Refs #541. Rank invariant normalization updated to store data in same …
9:45 AM Ticket #546 (Confirm sequencing as completed) created by Nicklas Nordborg
Part of #533. This is the first wizard in the "Secondary analysis …
9:31 AM Ticket #545 (Register sequencing as ended) created by Nicklas Nordborg
Part of #533. This wizard should be the last wizard in the "Library …

Dec 9, 2013:

4:08 PM Changeset [2166] by olle
Refs #228. Refs #541. Average normalization updated to untransform …
3:53 PM Ticket #544 (Re-design lab protocol and registration wizards for histology) created by Nicklas Nordborg
The current version of the lab protocol has only a single date field …
12:23 PM Changeset [2165] by olle
Refs #228. Refs #541. Quantile normalization updated to untransform …
11:19 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 2.14-beta-2 (diff)
11:17 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 2.14-beta-2 (diff)
11:15 AM Changeset [2164] by Nicklas Nordborg
Tagging Reggie 2.14-beta-2
11:14 AM Changeset [2163] by Nicklas Nordborg
Preparing to release Reggie 2.14-beta-2
11:03 AM Ticket #543 (Different default values in 'Blood registration wizard' depending on site) closed by Nicklas Nordborg
fixed: (In [2162]) Fixes #543: Different default values in 'Blood …
11:03 AM Changeset [2162] by Nicklas Nordborg
Fixes #543: Different default values in 'Blood registration wizard' …
10:06 AM Changeset [2161] by Nicklas Nordborg
References #528: Restrict access to some registation wizards Added …

Dec 6, 2013:

12:59 PM Changeset [2160] by Nicklas Nordborg
Fixes #542: PAD should be a PatientCurator? annotation Remove debug output.
10:01 AM Ticket #542 (PAD should be a PatientCurator annotation) closed by Nicklas Nordborg
fixed: (In [2159]) Fixes #542: PAD should be a PatientCurator? annotation The …
10:01 AM Changeset [2159] by Nicklas Nordborg
Fixes #542: PAD should be a PatientCurator? annotation The PAD values …
8:40 AM Changeset [2158] by Nicklas Nordborg
References #528: Restrict access to some registation wizards Fixes an …
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