Timeline
Dec 3, 2013:
- 2:32 PM Ticket #228 (net.sf.basedb.normalizers: Normalizers should use ask BASE whether ...) updated by
- Problem discussion: * The desired default option for averaging …
- 2:05 PM Ticket #541 (net.sf.basedb.normalizers: Normalizers should store normalized data in ...) updated by
-
Problem discussion:
* Class
QuantileNormalizationin … - 11:45 AM Ticket #528 (Restrict access to some registation wizards) updated by
-
Description changed
- 11:45 AM Ticket #528 (Restrict access to some registation wizards) updated by
-
Status, Description, Milestone changed
- 11:44 AM Ticket #541 (net.sf.basedb.normalizers: Normalizers should store normalized data in ...) updated by
- Traceability note: * BASE Ticket [http://base.thep.lu.se/ticket/1120 …
- 11:40 AM Ticket #228 (net.sf.basedb.normalizers: Normalizers should use ask BASE whether ...) updated by
- Traceability note: * BASE Ticket [http://base.thep.lu.se/ticket/1120 …
- 11:35 AM Ticket #541 (net.sf.basedb.normalizers: Normalizers should store normalized data in ...) updated by
- Background discussion (Thanks to Nicklas Nordborg for detailed …
- 8:23 AM Ticket #228 (net.sf.basedb.normalizers: Normalizers should use ask BASE whether ...) updated by
- Background discussion (Thanks to Nicklas Nordborg for detailed …
- 7:46 AM Ticket #541 (net.sf.basedb.normalizers: Normalizers should store normalized data in ...) updated by
-
Status changed
Ticket accepted. - 7:45 AM Ticket #228 (net.sf.basedb.normalizers: Normalizers should use ask BASE whether ...) updated by
-
Status changed
Ticket accepted.
Dec 2, 2013:
Nov 29, 2013:
- 2:19 PM Ticket #228 (net.sf.basedb.normalizers: Normalizers should use ask BASE whether ...) updated by
-
Status, Owner changed
- 2:18 PM Ticket #541 (net.sf.basedb.normalizers: Normalizers should store normalized data in ...) created by
- QuantileNormalizer always stores data non-logged irrespective what …
Nov 27, 2013:
- 8:53 AM Ticket #540 (Make sure Reggie works with BASE 3.3) created by
-
BASE 3.3 include a lot of
JavaScriptchanges which may affect the … - 8:45 AM Ticket #539 (Set "Disable log" flag on some annotation types) created by
- This is related to the new feature in BASE 3.3 about logging old …
Nov 26, 2013:
- 9:57 AM PluginDownload edited by
- Released Reggie 2.14-beta-1 (diff)
- 9:56 AM net.sf.basedb.reggie edited by
- Released Reggie 2.14-beta-1 (diff)
- 9:55 AM Changeset [2153] by
- Tagging Reggie 2.14-beta-1
- 9:54 AM Changeset [2152] by
- Preparing to release Reggie 2.14-beta-1
- 9:52 AM Ticket #538 (Count and display number of libraries with low and high concentration ...) closed by
- fixed: (In [2151]) Fixes #538: Count and display number of libraries with low …
- 9:52 AM Changeset [2151] by
- Fixes #538: Count and display number of libraries with low and high …
- 8:37 AM Ticket #537 (Allow 10µl as max volume in Create pooled libraries wizard) closed by
- fixed: (In [2150]) Fixes #537: Allow 10µl as max volume in Create pooled …
- 8:37 AM Changeset [2150] by
- Fixes #537: Allow 10µl as max volume in Create pooled libraries wizard
Nov 25, 2013:
- 10:49 AM Ticket #538 (Count and display number of libraries with low and high concentration ...) created by
- When the target volume in the 'Create pooled library' wizard changes …
- 10:11 AM Ticket #537 (Allow 10µl as max volume in Create pooled libraries wizard) created by
- The current limit is between 2 and 5µl. The 5µl limit was chosen to …
Nov 19, 2013:
- 1:18 PM Changeset [2149] by
- Removing Reggie/2.13-stable branch since it is now merged back to trunk.
- 1:16 PM Changeset [2148] by
- Merge changes from Reggie/2.13-stable development branch back to trunk.
- 1:11 PM Milestone Reggie v2.13 completed
- See Reggie extension page for more information.
- 1:11 PM PluginDownload edited by
- Released Reggie 2.13 (diff)
- 1:10 PM net.sf.basedb.reggie edited by
- Released Reggie 2.13 (diff)
- 1:08 PM Changeset [2147] by
- Tagging Reggie 2.13
- 1:08 PM Changeset [2146] by
- Preparing to release Reggie 2.13
- 10:46 AM Ticket #536 (Case summary display should remember the 'pageType' parameter) closed by
- fixed: (In [2145]) Fixes #536: Case summary display should remember the …
- 10:46 AM Changeset [2145] by
- Fixes #536: Case summary display should remember the 'pageType' parameter
- 10:34 AM Ticket #534 (Show case summary if given a personal number) closed by
- fixed: Ticket closed as the requested functionality has been added.
- 10:13 AM Ticket #534 (Show case summary if given a personal number) updated by
- (In [2144]) Refs #534. Case summary updated to use an input personal …
- 10:13 AM Changeset [2144] by
- Refs #534. Case summary updated to use an input personal number …
- 10:00 AM Ticket #534 (Show case summary if given a personal number) updated by
- Design implementation: The case summary is implemented by JSP script …
- 9:32 AM Ticket #536 (Case summary display should remember the 'pageType' parameter) created by
- The case summary can be opened from several different locations. …
- 9:29 AM Ticket #534 (Show case summary if given a personal number) updated by
- Design discussion. * Using a personal number to get a case summary …
- 9:16 AM Ticket #524 (Auto-select RNA wizard should be able to start from a specific date) closed by
- fixed: (In [2143]) Fixes #524: Auto-select RNA wizard should be able to start …
- 9:16 AM Changeset [2143] by
- Fixes #524: Auto-select RNA wizard should be able to start from a …
- 9:11 AM Ticket #535 (The Flagged RNA dialog doesn't round numeric values) closed by
- fixed: (In [2142]) Fixes #535: The Flagged RNA dialog doesn't round numeric values
- 9:11 AM Changeset [2142] by
- Fixes #535: The Flagged RNA dialog doesn't round numeric values
- 9:04 AM Ticket #535 (The Flagged RNA dialog doesn't round numeric values) created by
- This dialog is accessible from the 'Select RNA' wizard once an …
- 8:53 AM Ticket #534 (Show case summary if given a personal number) updated by
- Traceability note: * The case summary was introduced in Ticket #450 …
- 8:43 AM Ticket #534 (Show case summary if given a personal number) updated by
-
Status changed
Ticket accepted. - 8:42 AM Ticket #534 (Show case summary if given a personal number) updated by
-
Owner changed
Nov 18, 2013:
- 3:42 PM Ticket #524 (Auto-select RNA wizard should be able to start from a specific date) updated by
-
Status changed
- 2:36 PM Ticket #527 (Implement manual pooled library selection) updated by
- (In [2141]) References #527: Implement manual pooled library selection …
- 2:36 PM Changeset [2141] by
- References #527: Implement manual pooled library selection Selection …
- 11:46 AM Ticket #527 (Implement manual pooled library selection) updated by
- (In [2140]) References #527: Implement manual pooled library selection …
- 11:46 AM Changeset [2140] by
- References #527: Implement manual pooled library selection …
Nov 14, 2013:
- 10:05 AM Ticket #519 (Date fields should not allow 6-digit dates) closed by
- fixed: Ticket closed again after updating the two blood registration wizards …
- 10:02 AM Tickets #449,519 batch updated by
- (In [2139]) Refs #519. Refs #449. The two blood registration wizards …
- 10:02 AM Changeset [2139] by
- Refs #519. Refs #449. The two blood registration wizards updated to …
- 9:21 AM Ticket #449 (Add support for follow-up blood samples to the blood registration wizard) updated by
- (In [2138]) Refs #449. Wizard for registration of follow-up blood …
- 9:21 AM Changeset [2138] by
- Refs #449. Wizard for registration of follow-up blood samples updated …
Nov 13, 2013:
- 3:53 PM Ticket #527 (Implement manual pooled library selection) updated by
- (In [2137]) References #527: Implement manual pooled library selection …
- 3:53 PM Changeset [2137] by
- References #527: Implement manual pooled library selection This …
- 3:01 PM Ticket #519 (Date fields should not allow 6-digit dates) reopened by
- Reopening this ticket. The two blood registration wizards should allow …
- 2:41 PM Ticket #534 (Show case summary if given a personal number) created by
- The current case summary implementation requries a valid Scan-B case …
Nov 11, 2013:
- 3:25 PM Ticket #527 (Implement manual pooled library selection) updated by
-
Status changed
- 2:42 PM Ticket #533 (Add secondary analysis section to Reggie) created by
- This is the master ticket for adding secondary analysis registration …
- 2:35 PM Ticket #529 (Retrieve and store temperature and humidity measurements) updated by
-
Summary changed
- 2:34 PM Ticket #527 (Implement manual pooled library selection) updated by
-
Milestone changed
- 2:10 PM Changeset [2136] by
- Deleting obsolete bugfix branch.
- 2:08 PM Changeset [2135] by
- Delete branch since it has been merged to trunk in [2134].
- 2:07 PM Ticket #489 (Histology scoring wizard) updated by
- (In [2134]) References #489: Histology scoring wizard Merge …
- 2:07 PM Changeset [2134] by
- References #489: Histology scoring wizard Merge development branch …
- 1:58 PM Changeset [2133] by
- Preparing for future release Reggie 2.14.
- 1:57 PM Changeset [2132] by
- Creating branch for final Reggie 2.13 adjustments before release. …
- 1:43 PM Ticket #489 (Histology scoring wizard) updated by
- (In [2131]) References #489: Histology scoring wizard Added score …
- 1:43 PM Changeset [2131] by
- References #489: Histology scoring wizard Added score information to …
- 11:36 AM Ticket #489 (Histology scoring wizard) updated by
- (In [2130]) References #489: Histology scoring wizard Adding links …
- 11:36 AM Changeset [2130] by
- References #489: Histology scoring wizard Adding links from HE and PB …
- 11:27 AM Ticket #489 (Histology scoring wizard) updated by
- (In [2129]) References #489: Histology scoring wizard Do not ask …
- 11:27 AM Changeset [2129] by
- References #489: Histology scoring wizard Do not ask about 'unsaved …
- 10:49 AM Ticket #489 (Histology scoring wizard) updated by
- (In [2128]) References #489: Histology scoring wizard Several …
- 10:48 AM Changeset [2128] by
- References #489: Histology scoring wizard Several improvements to …
Nov 8, 2013:
- 5:14 PM Milestone VirtualArray 1.2 completed
- 5:14 PM PluginDownload edited by
- Virtual Array 1.2 released (diff)
- 5:12 PM se.lu.onk.VirtualArray edited by
- Virtual Array 1.2 released (diff)
- 5:09 PM Changeset [2127] by
- Tagging version 1.2 of \VirtualArray
- 4:43 PM Ticket #301 (Make sure installation instructions for VirtualArray are correct) closed by
- fixed: (In [2126]) Fixes #301. Added formula information and some minor updates.
- 4:43 PM Changeset [2126] by
- Fixes #301. Added formula information and some minor updates.
- 2:45 PM Ticket #130 (Base1PluginExecuter/ReplicateError: errors are not catched properly ...) closed by
- worksforme: I have gone through my runs from ancient times (thanks BASE for …
- 2:28 PM Ticket #489 (Histology scoring wizard) updated by
- (In [2125]) References #489: Histology scoring wizard Implemented …
- 2:28 PM Changeset [2125] by
- References #489: Histology scoring wizard Implemented saving of …
- 8:15 AM Ticket #489 (Histology scoring wizard) updated by
- (In [2124]) References #489: Histology scoring wizard Implemented …
- 8:15 AM Changeset [2124] by
- References #489: Histology scoring wizard Implemented 'Find HE …
Nov 7, 2013:
- 5:24 PM Ticket #196 (Illumina methylation arrays ...) closed by
- wontfix
- 5:23 PM Ticket #126 (Illumina SNP ... files are now supported (by the BASEcore) in the BASE ...) closed by
- wontfix
- 5:03 PM Ticket #532 (reggie QC wizard for additional QC measurements outside of routine) created by
- Typical use case (applied on DNA or RNA extract) is extra NanoDrop …
- 4:06 PM Ticket #130 (Base1PluginExecuter/ReplicateError: errors are not catched properly ...) updated by
-
Classes/files
ReplicateErrorAA.javaandReplicateErrorWA.javahave … - 11:54 AM Ticket #531 (BASE1 plugin - Transformation: Merge replicates) created by
- Old request found in the attic among a lot of dust and cobweb. Would …
- 11:06 AM Ticket #530 (Display logs from temperature and humidity measurements) created by
- See #529 for ticket about collecting measurements. It should be …
- 10:59 AM Ticket #529 (Retrieve and store temperature and humidity measurements) created by
- New 'climate' sensors have been installed in the lab and they are …
Nov 6, 2013:
- 3:41 PM Ticket #528 (Restrict access to some registation wizards) updated by
-
Summary changed
- 3:41 PM Ticket #528 (Restrict access to some registation wizards) created by
- There are currently 3 roles in reggie: admin, patient curator and all …
- 3:37 PM Ticket #524 (Auto-select RNA wizard should be able to start from a specific date) updated by
-
Milestone changed
- 3:36 PM Ticket #489 (Histology scoring wizard) updated by
-
Milestone changed
- 2:39 PM Ticket #56 (rename component onk.lu.se to be se.lu.onk -- split into several packages) updated by
-
Milestone changed
- 2:39 PM Ticket #209 (Export of data to data repositories such as GEO and ArrayExpress) updated by
-
Milestone changed
- 2:38 PM Ticket #188 (Add IGV as an extension similarly to MEV) updated by
-
Milestone changed
- 2:38 PM Ticket #144 (R plug-in framework) updated by
-
Milestone changed
- 2:32 PM Milestone Bittorrent download service v0.2 completed
- Wontfix Implement a prototype bittorent download service for BASE. …
- 2:31 PM Ticket #277 (Add the torrent extension to the download extensions page) closed by
- wontfix: It would be possible to implement but we do not have any practical use …
- 2:01 PM Ticket #489 (Histology scoring wizard) updated by
- (In [2123]) References #489: Histology scoring wizard Information …
- 2:01 PM Changeset [2123] by
- References #489: Histology scoring wizard Information about the next …
- 1:58 PM Ticket #489 (Histology scoring wizard) updated by
-
Status changed
- 12:06 PM Ticket #527 (Implement manual pooled library selection) created by
- The current wizard only support creating pooled libraries from a plate …
- 12:01 PM Ticket #526 (Retraction wizard) created by
- Patients that no longer wish to participate in the study may retract …
- 11:58 AM Ticket #525 (Import data from INCA) created by
- We get data from INCA at regular intervals in the form of a …
- 11:55 AM Ticket #524 (Auto-select RNA wizard should be able to start from a specific date) created by
- The current implementation of the auto-select function in the "Create …
Nov 5, 2013:
- 6:48 PM Changeset [2122] by
- Preparing for future release
- 6:46 PM Changeset [2121] by
- Tagging version 2.2 of se.lu.onk.Center
- 6:43 PM PluginDownload edited by
- (diff)
- 6:40 PM se.lu.onk.Center edited by
- New version released. (diff)
- 4:43 PM Changeset [2120] by
- Do not leave stdin/stdout.txt as default
- 3:52 PM Changeset [2119] by
- Preparing release 2.2
- 3:44 PM Ticket #79 (Center on assay (se.lu.onk.Center)) updated by
- (In [2118]) Addresses #79. Updated README to reflect changes made in …
- 3:44 PM Changeset [2118] by
- Addresses #79. Updated README to reflect changes made in ticket:79
Nov 4, 2013:
- 2:46 PM Ticket #489 (Histology scoring wizard) updated by
- (In [2117]) References #489: Histology scoring wizard * Added 7 new …
- 2:46 PM Changeset [2117] by
- References #489: Histology scoring wizard * Added 7 new annotations …
- 11:20 AM Ticket #449 (Add support for follow-up blood samples to the blood registration wizard) updated by
-
(In [2116]) Refs #449. Annotation type
BLOOD_RCCIDNUMBERis added to … - 11:20 AM Changeset [2116] by
-
Refs #449. Annotation type
BLOOD_RCCIDNUMBERis added toBlood… - 9:37 AM Changeset [2115] by
- Creating branch for working on #489: Histology scoring wizard
Note:
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