Timeline


and

Nov 19, 2013:

1:18 PM Changeset [2149] by nicklas
Removing Reggie/2.13-stable branch since it is now merged back to trunk.
1:16 PM Changeset [2148] by nicklas
Merge changes from Reggie/2.13-stable development branch back to trunk.
1:11 PM Milestone Reggie v2.13 completed
See Reggie extension page for more information.
1:11 PM PluginDownload edited by nicklas
Released Reggie 2.13 (diff)
1:10 PM net.sf.basedb.reggie edited by nicklas
Released Reggie 2.13 (diff)
1:09 PM reggie-2.13.tar.gz attached to net.sf.basedb.reggie by nicklas
Reggie 2.13
1:08 PM Changeset [2147] by nicklas
Tagging Reggie 2.13
1:08 PM Changeset [2146] by nicklas
Preparing to release Reggie 2.13
10:46 AM Ticket #536 (Case summary display should remember the 'pageType' parameter) closed by nicklas
fixed: (In [2145]) Fixes #536: Case summary display should remember the …
10:46 AM Changeset [2145] by nicklas
Fixes #536: Case summary display should remember the 'pageType' parameter
10:34 AM Ticket #534 (Show case summary if given a personal number) closed by olle
fixed: Ticket closed as the requested functionality has been added.
10:13 AM Changeset [2144] by olle
Refs #534. Case summary updated to use an input personal number …
9:32 AM Ticket #536 (Case summary display should remember the 'pageType' parameter) created by nicklas
The case summary can be opened from several different locations. …
9:16 AM Ticket #524 (Auto-select RNA wizard should be able to start from a specific date) closed by nicklas
fixed: (In [2143]) Fixes #524: Auto-select RNA wizard should be able to start …
9:16 AM Changeset [2143] by nicklas
Fixes #524: Auto-select RNA wizard should be able to start from a …
9:11 AM Ticket #535 (The Flagged RNA dialog doesn't round numeric values) closed by nicklas
fixed: (In [2142]) Fixes #535: The Flagged RNA dialog doesn't round numeric values
9:11 AM Changeset [2142] by nicklas
Fixes #535: The Flagged RNA dialog doesn't round numeric values
9:04 AM Ticket #535 (The Flagged RNA dialog doesn't round numeric values) created by nicklas
This dialog is accessible from the 'Select RNA' wizard once an …

Nov 18, 2013:

2:36 PM Changeset [2141] by nicklas
References #527: Implement manual pooled library selection Selection …
11:46 AM Changeset [2140] by nicklas
References #527: Implement manual pooled library selection …

Nov 14, 2013:

10:05 AM Ticket #519 (Date fields should not allow 6-digit dates) closed by olle
fixed: Ticket closed again after updating the two blood registration wizards …
10:02 AM Changeset [2139] by olle
Refs #519. Refs #449. The two blood registration wizards updated to …
9:21 AM Changeset [2138] by olle
Refs #449. Wizard for registration of follow-up blood samples updated …

Nov 13, 2013:

3:53 PM Changeset [2137] by nicklas
References #527: Implement manual pooled library selection This …
3:01 PM Ticket #519 (Date fields should not allow 6-digit dates) reopened by nicklas
Reopening this ticket. The two blood registration wizards should allow …
2:41 PM Ticket #534 (Show case summary if given a personal number) created by nicklas
The current case summary implementation requries a valid Scan-B case …

Nov 11, 2013:

2:42 PM Ticket #533 (Add secondary analysis section to Reggie) created by nicklas
This is the master ticket for adding secondary analysis registration …
2:10 PM Changeset [2136] by nicklas
Deleting obsolete bugfix branch.
2:08 PM Changeset [2135] by nicklas
Delete branch since it has been merged to trunk in [2134].
2:07 PM Changeset [2134] by nicklas
References #489: Histology scoring wizard Merge development branch …
1:58 PM Changeset [2133] by nicklas
Preparing for future release Reggie 2.14.
1:57 PM Changeset [2132] by nicklas
Creating branch for final Reggie 2.13 adjustments before release. …
1:43 PM Changeset [2131] by nicklas
References #489: Histology scoring wizard Added score information to …
11:36 AM Changeset [2130] by nicklas
References #489: Histology scoring wizard Adding links from HE and PB …
11:27 AM Changeset [2129] by nicklas
References #489: Histology scoring wizard Do not ask about 'unsaved …
10:48 AM Changeset [2128] by nicklas
References #489: Histology scoring wizard Several improvements to …

Nov 8, 2013:

5:14 PM Milestone VirtualArray 1.2 completed
5:14 PM PluginDownload edited by jari
Virtual Array 1.2 released (diff)
5:12 PM se.lu.onk.VirtualArray edited by jari
Virtual Array 1.2 released (diff)
5:11 PM VirtualArray-1.2.tgz.MD5 attached to se.lu.onk.VirtualArray by jari
5:11 PM VirtualArray-1.2.tgz attached to se.lu.onk.VirtualArray by jari
5:09 PM Changeset [2127] by jari
Tagging version 1.2 of \VirtualArray
4:43 PM Ticket #301 (Make sure installation instructions for VirtualArray are correct) closed by jari
fixed: (In [2126]) Fixes #301. Added formula information and some minor updates.
4:43 PM Changeset [2126] by jari
Fixes #301. Added formula information and some minor updates.
2:45 PM Ticket #130 (Base1PluginExecuter/ReplicateError: errors are not catched properly ...) closed by jari
worksforme: I have gone through my runs from ancient times (thanks BASE for …
2:28 PM Changeset [2125] by nicklas
References #489: Histology scoring wizard Implemented saving of …
8:15 AM Changeset [2124] by nicklas
References #489: Histology scoring wizard Implemented 'Find HE …

Nov 7, 2013:

5:24 PM Ticket #196 (Illumina methylation arrays ...) closed by jari
wontfix
5:23 PM Ticket #126 (Illumina SNP ... files are now supported (by the BASEcore) in the BASE ...) closed by jari
wontfix
5:03 PM Ticket #532 (reggie QC wizard for additional QC measurements outside of routine) created by jari
Typical use case (applied on DNA or RNA extract) is extra NanoDrop?
11:54 AM Ticket #531 (BASE1 plugin - Transformation: Merge replicates) created by jari
Old request found in the attic among a lot of dust and cobweb. Would …
11:06 AM Ticket #530 (Display logs from temperature and humidity measurements) created by nicklas
See #529 for ticket about collecting measurements. It should be …
10:59 AM Ticket #529 (Retrieve and store temperature and humidity measurements) created by nicklas
New 'climate' sensors have been installed in the lab and they are …

Nov 6, 2013:

3:41 PM Ticket #528 (Restrict access to some registation wizards) created by nicklas
There are currently 3 roles in reggie: admin, patient curator and all …
2:32 PM Milestone Bittorrent download service v0.2 completed
Wontfix Implement a prototype bittorent download service for BASE. …
2:31 PM Ticket #277 (Add the torrent extension to the download extensions page) closed by jari
wontfix: It would be possible to implement but we do not have any practical use …
2:01 PM Changeset [2123] by nicklas
References #489: Histology scoring wizard Information about the next …
12:06 PM Ticket #527 (Implement manual pooled library selection) created by nicklas
The current wizard only support creating pooled libraries from a plate …
12:01 PM Ticket #526 (Retraction wizard) created by nicklas
Patients that no longer wish to participate in the study may retract …
11:58 AM Ticket #525 (Import data from INCA) created by nicklas
We get data from INCA at regular intervals in the form of a …
11:55 AM Ticket #524 (Auto-select RNA wizard should be able to start from a specific date) created by nicklas
The current implementation of the auto-select function in the "Create …

Nov 5, 2013:

6:48 PM Changeset [2122] by jari
Preparing for future release
6:46 PM Changeset [2121] by jari
Tagging version 2.2 of se.lu.onk.Center
6:43 PM PluginDownload edited by jari
(diff)
6:40 PM se.lu.onk.Center edited by jari
New version released. (diff)
6:38 PM Center-2.2.tgz.MD5 attached to se.lu.onk.Center by jari
6:38 PM Center-2.2.tgz attached to se.lu.onk.Center by jari
4:43 PM Changeset [2120] by jari
Do not leave stdin/stdout.txt as default
3:52 PM Changeset [2119] by jari
Preparing release 2.2
3:44 PM Changeset [2118] by jari
Addresses #79. Updated README to reflect changes made in ticket:79

Nov 4, 2013:

2:46 PM Changeset [2117] by nicklas
References #489: Histology scoring wizard * Added 7 new annotations …
11:20 AM Changeset [2116] by olle
Refs #449. Annotation type BLOOD_RCCIDNUMBER is added to Blood
9:37 AM Changeset [2115] by nicklas
Creating branch for working on #489: Histology scoring wizard

Oct 30, 2013:

2:06 PM PluginDownload edited by nicklas
Released Reggie 2.13-beta-3 (diff)
2:06 PM net.sf.basedb.reggie edited by nicklas
Released Reggie 2.13-beta-3 (diff)
2:04 PM reggie-2.13-beta-3.tar.gz attached to net.sf.basedb.reggie by nicklas
Reggie 2.13-beta-3
2:03 PM Changeset [2114] by nicklas
Tagging Reggie 2.13-beta-3
2:03 PM Changeset [2113] by nicklas
Preparing to release Reggie 2.13-beta-3
11:31 AM Changeset [2112] by nicklas
References #501: Generate lab protocol for clustering Added a section …
9:59 AM Changeset [2111] by olle
Refs #502. Design for flow cell creation updated to allow one or more …
9:11 AM Changeset [2110] by olle
Refs #502. Bug fixed that prevented registering a flow cell, when …

Oct 29, 2013:

1:28 PM net.sf.basedb.reggie edited by nicklas
Group changelogs by type of ticket (diff)
12:56 PM Changeset [2109] by nicklas
References #502 and #481. Added PooledLibraryAliquot subtype which …
11:10 AM Changeset [2108] by nicklas
References #512: Updates to the register pooled libraries wizard …
10:38 AM Changeset [2107] by nicklas
References #481 and #501. Adding support for registering which cBot …

Oct 25, 2013:

1:54 PM Changeset [2106] by nicklas
References #523: Show/hide detail rows in Case summary The toolbar is …
11:34 AM Changeset [2105] by nicklas
References #499: Export sample sheet for flow cell The ReadString
9:28 AM net.sf.basedb.reggie.notes213 edited by nicklas
Added note about 'destroying' *.dil items (diff)
9:18 AM Changeset [2104] by nicklas
References #503: Change pooling strategy Destroy *.dil items after …
8:36 AM Changeset [2103] by nicklas
References #471: Add library preparation information to the 'Case …
8:24 AM Changeset [2102] by nicklas
References #502: Design flow cells Removed ReadString annotation …
8:15 AM Changeset [2101] by nicklas
References #471: Add library preparation information to the 'Case …

Oct 24, 2013:

2:32 PM Ticket #523 (Show/hide detail rows in Case summary) closed by nicklas
fixed: (In [2100]) Fixes #523: Show/hide detail rows in Case summary It is …
2:32 PM Changeset [2100] by nicklas
Fixes #523: Show/hide detail rows in Case summary It is now possible …

Oct 23, 2013:

1:43 PM net.sf.basedb.reggie.notes213 edited by jari
(diff)
1:19 PM Ticket #522 (Move Histology information to left column in Case summary page) closed by nicklas
fixed: (In [2099]) Fixes #522: Move Histology information to left column in …
1:19 PM Changeset [2099] by nicklas
Fixes #522: Move Histology information to left column in Case summary page
1:17 PM Ticket #521 (Add DNA and FlowThrough information to Case summary page) closed by nicklas
fixed: (In [2098]) Fixes #521: Add DNA and FlowThrough? information to Case …
1:17 PM Changeset [2098] by nicklas
Fixes #521: Add DNA and FlowThrough? information to Case summary page
12:31 PM Ticket #523 (Show/hide detail rows in Case summary) created by nicklas
For each section in the Case summary view it should be possible to …
12:29 PM Ticket #522 (Move Histology information to left column in Case summary page) created by nicklas
The columns are already unbalance and #521 will add even more …
12:27 PM Ticket #521 (Add DNA and FlowThrough information to Case summary page) created by nicklas
11:43 AM PluginDownload edited by nicklas
Released Reggie 2.13-beta-2 (diff)
11:43 AM net.sf.basedb.reggie edited by nicklas
Released Reggie 2.13-beta-2 (diff)
11:41 AM reggie-2.13-beta-2.tar.gz attached to net.sf.basedb.reggie by nicklas
Reggie 2.13-beta-2
11:41 AM Changeset [2097] by nicklas
Tagging Reggie 2.13-beta-2
11:40 AM Changeset [2096] by nicklas
Preparing to release Reggie 2.13-beta-2
9:43 AM Ticket #520 (Store Qiacube annotation on FlowThrough items) closed by nicklas
fixed: (In [2095]) Fixes #520: Store Qiacube annotation on FlowThrough? items
9:43 AM Changeset [2095] by nicklas
Fixes #520: Store Qiacube annotation on FlowThrough? items
9:24 AM net.sf.basedb.reggie.notes213 edited by nicklas
Added not about fixing missing QiaCube? annotation on FlowThrough? items (diff)
9:17 AM Ticket #520 (Store Qiacube annotation on FlowThrough items) created by nicklas
The DNA/RNA/FlowThrough registration wizard currently store the …

Oct 22, 2013:

11:29 AM Ticket #499 (Export sample sheet for flow cell) closed by nicklas
fixed
11:29 AM Ticket #481 (Register prepared flow cells) closed by nicklas
fixed
11:27 AM Ticket #501 (Generate lab protocol for clustering) closed by nicklas
fixed
11:26 AM Ticket #502 (Design flow cells) closed by nicklas
fixed

Oct 21, 2013:

2:49 PM Changeset [2094] by nicklas
References #481 and #501. Make selection of flow cells easier by …
1:33 PM Changeset [2093] by nicklas
References #502: Design flow cells Only display pool name (not …
12:52 PM Changeset [2092] by nicklas
Do not attempt to set html if tag doesn't exists.
12:51 PM Changeset [2091] by nicklas
References #512: Updates to the register pooled libraries wizard …
11:47 AM Changeset [2090] by nicklas
References #502: Design flow cells Display library plate names in the …
9:02 AM Changeset [2089] by nicklas
References #481: Register prepared flow cells Replaces ReadString
Note: See TracTimeline for information about the timeline view.