Timeline


and

Oct 30, 2013:

2:06 PM PluginDownload edited by nicklas
Released Reggie 2.13-beta-3 (diff)
2:06 PM net.sf.basedb.reggie edited by nicklas
Released Reggie 2.13-beta-3 (diff)
2:04 PM reggie-2.13-beta-3.tar.gz attached to net.sf.basedb.reggie by nicklas
Reggie 2.13-beta-3
2:03 PM Changeset [2114] by nicklas
Tagging Reggie 2.13-beta-3
2:03 PM Changeset [2113] by nicklas
Preparing to release Reggie 2.13-beta-3
11:31 AM Changeset [2112] by nicklas
References #501: Generate lab protocol for clustering Added a section …
9:59 AM Changeset [2111] by olle
Refs #502. Design for flow cell creation updated to allow one or more …
9:11 AM Changeset [2110] by olle
Refs #502. Bug fixed that prevented registering a flow cell, when …

Oct 29, 2013:

1:28 PM net.sf.basedb.reggie edited by nicklas
Group changelogs by type of ticket (diff)
12:56 PM Changeset [2109] by nicklas
References #502 and #481. Added PooledLibraryAliquot subtype which …
11:10 AM Changeset [2108] by nicklas
References #512: Updates to the register pooled libraries wizard …
10:38 AM Changeset [2107] by nicklas
References #481 and #501. Adding support for registering which cBot …

Oct 25, 2013:

1:54 PM Changeset [2106] by nicklas
References #523: Show/hide detail rows in Case summary The toolbar is …
11:34 AM Changeset [2105] by nicklas
References #499: Export sample sheet for flow cell The ReadString
9:28 AM net.sf.basedb.reggie.notes213 edited by nicklas
Added note about 'destroying' *.dil items (diff)
9:18 AM Changeset [2104] by nicklas
References #503: Change pooling strategy Destroy *.dil items after …
8:36 AM Changeset [2103] by nicklas
References #471: Add library preparation information to the 'Case …
8:24 AM Changeset [2102] by nicklas
References #502: Design flow cells Removed ReadString annotation …
8:15 AM Changeset [2101] by nicklas
References #471: Add library preparation information to the 'Case …

Oct 24, 2013:

2:32 PM Ticket #523 (Show/hide detail rows in Case summary) closed by nicklas
fixed: (In [2100]) Fixes #523: Show/hide detail rows in Case summary It is …
2:32 PM Changeset [2100] by nicklas
Fixes #523: Show/hide detail rows in Case summary It is now possible …

Oct 23, 2013:

1:43 PM net.sf.basedb.reggie.notes213 edited by jari
(diff)
1:19 PM Ticket #522 (Move Histology information to left column in Case summary page) closed by nicklas
fixed: (In [2099]) Fixes #522: Move Histology information to left column in …
1:19 PM Changeset [2099] by nicklas
Fixes #522: Move Histology information to left column in Case summary page
1:17 PM Ticket #521 (Add DNA and FlowThrough information to Case summary page) closed by nicklas
fixed: (In [2098]) Fixes #521: Add DNA and FlowThrough? information to Case …
1:17 PM Changeset [2098] by nicklas
Fixes #521: Add DNA and FlowThrough? information to Case summary page
12:31 PM Ticket #523 (Show/hide detail rows in Case summary) created by nicklas
For each section in the Case summary view it should be possible to …
12:29 PM Ticket #522 (Move Histology information to left column in Case summary page) created by nicklas
The columns are already unbalance and #521 will add even more …
12:27 PM Ticket #521 (Add DNA and FlowThrough information to Case summary page) created by nicklas
11:43 AM PluginDownload edited by nicklas
Released Reggie 2.13-beta-2 (diff)
11:43 AM net.sf.basedb.reggie edited by nicklas
Released Reggie 2.13-beta-2 (diff)
11:41 AM reggie-2.13-beta-2.tar.gz attached to net.sf.basedb.reggie by nicklas
Reggie 2.13-beta-2
11:41 AM Changeset [2097] by nicklas
Tagging Reggie 2.13-beta-2
11:40 AM Changeset [2096] by nicklas
Preparing to release Reggie 2.13-beta-2
9:43 AM Ticket #520 (Store Qiacube annotation on FlowThrough items) closed by nicklas
fixed: (In [2095]) Fixes #520: Store Qiacube annotation on FlowThrough? items
9:43 AM Changeset [2095] by nicklas
Fixes #520: Store Qiacube annotation on FlowThrough? items
9:24 AM net.sf.basedb.reggie.notes213 edited by nicklas
Added not about fixing missing QiaCube? annotation on FlowThrough? items (diff)
9:17 AM Ticket #520 (Store Qiacube annotation on FlowThrough items) created by nicklas
The DNA/RNA/FlowThrough registration wizard currently store the …

Oct 22, 2013:

11:29 AM Ticket #499 (Export sample sheet for flow cell) closed by nicklas
fixed
11:29 AM Ticket #481 (Register prepared flow cells) closed by nicklas
fixed
11:27 AM Ticket #501 (Generate lab protocol for clustering) closed by nicklas
fixed
11:26 AM Ticket #502 (Design flow cells) closed by nicklas
fixed

Oct 21, 2013:

2:49 PM Changeset [2094] by nicklas
References #481 and #501. Make selection of flow cells easier by …
1:33 PM Changeset [2093] by nicklas
References #502: Design flow cells Only display pool name (not …
12:52 PM Changeset [2092] by nicklas
Do not attempt to set html if tag doesn't exists.
12:51 PM Changeset [2091] by nicklas
References #512: Updates to the register pooled libraries wizard …
11:47 AM Changeset [2090] by nicklas
References #502: Design flow cells Display library plate names in the …
9:02 AM Changeset [2089] by nicklas
References #481: Register prepared flow cells Replaces ReadString

Oct 18, 2013:

2:29 PM Changeset [2088] by nicklas
References #499: Export sample sheet for flow cell Added ReadString
1:42 PM Changeset [2087] by nicklas
References #502 and #501. Renamed SequenceString to …
1:11 PM Changeset [2086] by nicklas
References #501: Generate lab protocol for clustering Replaced …
12:46 PM Changeset [2085] by nicklas
References #502: Design flow cells Replaced ReadString with …
12:15 PM Ticket #519 (Date fields should not allow 6-digit dates) closed by olle
fixed: Ticket closed as the fix suggested in the ticket description has been …
12:12 PM Changeset [2084] by olle
Refs #519. Reggie updated to not auto-fill 6-digit date entries by …
11:05 AM Ticket #519 (Date fields should not allow 6-digit dates) created by nicklas
In all wizards that include date fields, the instructions are that …
8:24 AM Ticket #490 (Histology scoring lab protocols) closed by nicklas
wontfix: It was decided to implement a scoring wizard that can be used in the lab.
7:45 AM Changeset [2083] by olle
Refs #471. Library preparation information in 'Case Summary' updated …

Oct 17, 2013:

3:42 PM Changeset [2082] by nicklas
Remove unused imports and fixes some incorrect documentation links.
2:43 PM Changeset [2081] by olle
Refs #471. Library preparation information in 'Case Summary' updated …
2:40 PM Ticket #518 (Installation wizard must be run twice) closed by nicklas
fixed: (In [2080]) Fixes #518: Installation wizard must be run twice
2:40 PM Changeset [2080] by nicklas
Fixes #518: Installation wizard must be run twice
1:46 PM Changeset [2079] by nicklas
References #481: Register prepared flow cells Allow registration of …
10:07 AM net.sf.basedb.reggie.notes213 edited by nicklas
Correcting formula for calculating PoolConc? (diff)
9:31 AM Changeset [2078] by olle
Refs #471. Bug fixed that prevented information on missing pooled …
8:18 AM Changeset [2077] by nicklas
References #481: Register prepared flow cells Implemented support for …

Oct 16, 2013:

1:50 PM Changeset [2076] by nicklas
References #499: Export sample sheet for flow cell Better progress …
1:42 PM Changeset [2075] by nicklas
References #499: Export sample sheet for flow cell Removed hardcoded …
1:23 PM Ticket #518 (Installation wizard must be run twice) created by nicklas
Sometimes the installation wizard need to update/fix so many things …
11:07 AM Changeset [2074] by nicklas
References #513: Make it easier to spot problems in installation …
9:33 AM Ticket #517 (Ensure that the "Failure" option is not selected by mistake) closed by nicklas
fixed: (In [2073]) Fixes #517: Ensure that the "Failure" option is not …
9:33 AM Changeset [2073] by nicklas
Fixes #517: Ensure that the "Failure" option is not selected by …
8:47 AM Ticket #517 (Ensure that the "Failure" option is not selected by mistake) created by nicklas
Several of the library preparation registration wizards have an option …

Oct 15, 2013:

1:09 PM PluginDownload edited by nicklas
Released Reggie 2.13-beta-1 (diff)
1:09 PM net.sf.basedb.reggie edited by nicklas
Released Reggie 2.13-beta-1 (diff)
1:06 PM reggie-2.13-beta-1.tar.gz attached to net.sf.basedb.reggie by nicklas
Reggie 2.13-beta-1
1:05 PM Changeset [2072] by nicklas
Tagging Reggie 2.13-beta-1
1:05 PM Changeset [2071] by nicklas
Preparing to release Reggie 2.13-beta-1.
1:03 PM Changeset [2070] by nicklas
References #481: Register prepared flow cells Duplicate the entered …
12:58 PM Changeset [2069] by nicklas
References #501: Generate lab protocol for clustering Larger column …
12:41 PM Ticket #512 (Updates to the register pooled libraries wizard) closed by nicklas
fixed
12:40 PM Ticket #503 (Change pooling strategy) closed by nicklas
fixed
12:40 PM Changeset [2068] by nicklas
References #481: Register prepared flow cells Disabled the 'failed' …
11:40 AM Ticket #516 (Include empty rows in list view of pool protocol) closed by nicklas
fixed: (In [2067]) Fixes #516: Include empty rows in list view of pool …
11:40 AM Changeset [2067] by nicklas
Fixes #516: Include empty rows in list view of pool protocol The fix …
11:37 AM Ticket #516 (Include empty rows in list view of pool protocol) created by nicklas
If the pools are from a single library plate the list view should …
8:40 AM Changeset [2066] by nicklas
References #512: Updates to the register pooled libraries wizard …
8:25 AM Ticket #471 (Add library preparation information to the 'Case summary' feature) closed by olle
fixed: Ticket closed as the updates for first version of Library preparation …
8:02 AM Changeset [2065] by olle
Refs #471. Library preparation information in 'Case Summary' updated …

Oct 14, 2013:

1:29 PM Changeset [2064] by nicklas
References #481: Register prepared flow cells Changed orientation of …
12:57 PM Changeset [2063] by nicklas
References #501: Generate lab protocol for clustering Re-organized …
8:54 AM Changeset [2062] by nicklas
References #481 and #501. If 'Flow cell ID' is already known for a …

Oct 11, 2013:

2:49 PM Changeset [2061] by nicklas
References #501: Generate lab protocol for clustering Changed the …
2:48 PM Changeset [2060] by nicklas
References #481: Register prepared flow cells Added HiSeqPosition
12:31 PM Changeset [2059] by nicklas
References #481: Register prepared flow cells Re-organized the …

Oct 10, 2013:

9:40 AM Ticket #514 (Do not enter date if time is missing in specimen tube registration) closed by olle
fixed: (In [2058]) Fixes #514. Specimen tube registration updated in error …
9:40 AM Changeset [2058] by olle
Fixes #514. Specimen tube registration updated in error message when a …
9:10 AM Changeset [2057] by nicklas
References #481: Register prepared flow cells Added support for …
8:59 AM Ticket #515 (Store sequence for barcodes as annotations on tags) created by nicklas
Barcode items are currently created in Reggie (AD001--AD0027). When …

Oct 9, 2013:

3:00 PM Changeset [2056] by olle
Refs #501. Lab protocol for clustering updated in JSP script …
11:53 AM Changeset [2055] by olle
Refs #501. Lab protocol for clustering updated in JSP script …
11:20 AM Changeset [2054] by olle
Refs #471. Library preparation information in 'Case Summary' updated …
11:17 AM Changeset [2053] by nicklas
References #503: Change pooling strategy Updates to the pooling lab …
11:10 AM Changeset [2052] by olle
Refs #471. Library preparation information in 'Case Summary' updated …
7:59 AM Changeset [2051] by olle
Refs #471. Library preparation information in 'Case Summary' updated …

Oct 8, 2013:

12:31 PM Ticket #514 (Do not enter date if time is missing in specimen tube registration) created by nicklas
Ticket #437 made a few changes to how date and times are validated in …

Oct 7, 2013:

4:46 PM Changeset [2050] by olle
Refs #471. First version of library preparation information in 'Case …
3:38 PM Changeset [2049] by nicklas
References #481: Register prepared flow cells The wizard now creates …
1:11 PM Ticket #513 (Make it easier to spot problems in installation wizard) closed by nicklas
fixed: (In [2048]) Fixes #513: Make it easier to spot problems in …
1:11 PM Changeset [2048] by nicklas
Fixes #513: Make it easier to spot problems in installation wizard …
11:45 AM Ticket #513 (Make it easier to spot problems in installation wizard) created by nicklas
The number of items created in the installation wizard is now really …
11:27 AM Changeset [2047] by olle
Refs #501. Lab protocol for clustering updated in JSP script …
11:17 AM Changeset [2046] by olle
Refs #501. Lab protocol for clustering updated in JSP script …
11:07 AM Changeset [2045] by nicklas
References #502: Design flow cells Added support for adding comments …
9:27 AM Changeset [2044] by nicklas
References #512: Updates to the register pooled libraries wizard …
9:26 AM Ticket #512 (Updates to the register pooled libraries wizard) created by nicklas
The first version was implemented in #480. Due to changes in the …
8:47 AM Changeset [2043] by nicklas
References #503: Change pooling strategy Fixed bug in volume …

Oct 4, 2013:

1:51 PM Changeset [2042] by nicklas
References #503: Change pooling strategy Added support for writing …
12:50 PM net.sf.basedb.reggie.notes213 edited by nicklas
Removing section about the need to register pools since it is no … (diff)
12:47 PM Changeset [2041] by nicklas
References #503: Change pooling strategy Implemented option to select …

Oct 3, 2013:

3:32 PM Changeset [2040] by nicklas
References #503: Change pooling strategy Better handling of the …
2:54 PM Ticket #509 (Error icons after successful registration of caliper lib results) closed by olle
fixed: Ticket closed after successful passing of local test.
2:47 PM Changeset [2039] by olle
Refs #509. JSP script lib_registration.jsp in …
11:29 AM Ticket #506 (Installation wizard doesn't check if biomaterial list is shared) closed by olle
fixed: (In [2038]) Fixes #506. Installation wizard updated to check if …
11:29 AM Changeset [2038] by olle
Fixes #506. Installation wizard updated to check if biomaterial is …
9:40 AM net.sf.basedb.reggie.notes213 edited by nicklas
Clarifying that only item 1 need to be done before installing the update (diff)
9:37 AM Ticket #511 (Consent information not copied from PreNeo blood registration) closed by nicklas
fixed: Added instructions for manually copying consent informatio. See …
9:36 AM net.sf.basedb.reggie.notes213 edited by nicklas
Adding note about fixing missing consent annotations on cases (diff)
9:23 AM Changeset [2037] by nicklas
References #511: Consent information not copied from PreNeo? blood …
8:20 AM Changeset [2036] by olle
Refs #449. Javascript file reggie.js in reggie/resources/ updated …

Oct 2, 2013:

4:07 PM Changeset [2035] by olle
Refs #501. Lab protocol for clustering updated in JSP script …
3:41 PM Ticket #511 (Consent information not copied from PreNeo blood registration) created by nicklas
It seems like registering information from a patient in the following …
2:50 PM Changeset [2034] by olle
Refs #501. Directory that was erroneously copied in changeset 2033 is …
2:13 PM Changeset [2033] by olle
Refs #501. First version of wizard for clustering lab protocol.
1:57 PM Ticket #507 ('dil' items are created with incorrect value for PoolConc annotation) closed by nicklas
fixed: Added instructions for manually fixing issues PoolConc values. See …
1:56 PM net.sf.basedb.reggie.notes213 edited by nicklas
Adding note about fixing PoolConc? annotations (diff)
1:29 PM Ticket #508 (Library plates remain in the 'Create pooled libraries' wizard after ...) closed by nicklas
fixed: Added instructions for manually fixing issues with library and RNA …
1:27 PM net.sf.basedb.reggie.notes213 edited by nicklas
More instructions for the manual fix for #508 (diff)
11:50 AM net.sf.basedb.reggie.notes213 edited by nicklas
Adding note about flagging some libraries (diff)
11:47 AM Changeset [2032] by nicklas
References #508: Library plates remain in the 'Create pooled …

Oct 1, 2013:

2:07 PM Changeset [2031] by nicklas
References #481: Register prepared flow cells Added fields for …

Sep 30, 2013:

2:42 PM Changeset [2030] by nicklas
References #499: Export sample sheet for flow cell The exporter now …
2:01 PM Changeset [2029] by nicklas
References #502: Design flow cells Re-enable call to dc.commit() …
1:59 PM Changeset [2028] by nicklas
References #502: Design flow cells Added "ReadString?" field and …
9:57 AM Ticket #510 (Consistent use of terms in the lab protocols and Reggie interface) created by nicklas
The lab personnel has noted that in some cases names and terms for …
9:43 AM net.sf.basedb.reggie.notes213 edited by nicklas
Important note about updating (diff)
9:38 AM Ticket #504 (Allow target volume/library in a pool to be changed) closed by nicklas
fixed: Fixed in [2027] as part of #503.
9:36 AM Changeset [2027] by nicklas
References #503: Change pooling strategy The new implementation works …
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