Timeline


and

Oct 15, 2013:

1:09 PM PluginDownload edited by nicklas
Released Reggie 2.13-beta-1 (diff)
1:09 PM net.sf.basedb.reggie edited by nicklas
Released Reggie 2.13-beta-1 (diff)
1:06 PM reggie-2.13-beta-1.tar.gz attached to net.sf.basedb.reggie by nicklas
Reggie 2.13-beta-1
1:05 PM Changeset [2072] by nicklas
Tagging Reggie 2.13-beta-1
1:05 PM Changeset [2071] by nicklas
Preparing to release Reggie 2.13-beta-1.
1:03 PM Changeset [2070] by nicklas
References #481: Register prepared flow cells Duplicate the entered …
12:58 PM Changeset [2069] by nicklas
References #501: Generate lab protocol for clustering Larger column …
12:41 PM Ticket #512 (Updates to the register pooled libraries wizard) closed by nicklas
fixed
12:40 PM Ticket #503 (Change pooling strategy) closed by nicklas
fixed
12:40 PM Changeset [2068] by nicklas
References #481: Register prepared flow cells Disabled the 'failed' …
11:40 AM Ticket #516 (Include empty rows in list view of pool protocol) closed by nicklas
fixed: (In [2067]) Fixes #516: Include empty rows in list view of pool …
11:40 AM Changeset [2067] by nicklas
Fixes #516: Include empty rows in list view of pool protocol The fix …
11:37 AM Ticket #516 (Include empty rows in list view of pool protocol) created by nicklas
If the pools are from a single library plate the list view should …
8:40 AM Changeset [2066] by nicklas
References #512: Updates to the register pooled libraries wizard …
8:25 AM Ticket #471 (Add library preparation information to the 'Case summary' feature) closed by olle
fixed: Ticket closed as the updates for first version of Library preparation …
8:02 AM Changeset [2065] by olle
Refs #471. Library preparation information in 'Case Summary' updated …

Oct 14, 2013:

1:29 PM Changeset [2064] by nicklas
References #481: Register prepared flow cells Changed orientation of …
12:57 PM Changeset [2063] by nicklas
References #501: Generate lab protocol for clustering Re-organized …
8:54 AM Changeset [2062] by nicklas
References #481 and #501. If 'Flow cell ID' is already known for a …

Oct 11, 2013:

2:49 PM Changeset [2061] by nicklas
References #501: Generate lab protocol for clustering Changed the …
2:48 PM Changeset [2060] by nicklas
References #481: Register prepared flow cells Added HiSeqPosition
12:31 PM Changeset [2059] by nicklas
References #481: Register prepared flow cells Re-organized the …

Oct 10, 2013:

9:40 AM Ticket #514 (Do not enter date if time is missing in specimen tube registration) closed by olle
fixed: (In [2058]) Fixes #514. Specimen tube registration updated in error …
9:40 AM Changeset [2058] by olle
Fixes #514. Specimen tube registration updated in error message when a …
9:10 AM Changeset [2057] by nicklas
References #481: Register prepared flow cells Added support for …
8:59 AM Ticket #515 (Store sequence for barcodes as annotations on tags) created by nicklas
Barcode items are currently created in Reggie (AD001--AD0027). When …

Oct 9, 2013:

3:00 PM Changeset [2056] by olle
Refs #501. Lab protocol for clustering updated in JSP script …
11:53 AM Changeset [2055] by olle
Refs #501. Lab protocol for clustering updated in JSP script …
11:20 AM Changeset [2054] by olle
Refs #471. Library preparation information in 'Case Summary' updated …
11:17 AM Changeset [2053] by nicklas
References #503: Change pooling strategy Updates to the pooling lab …
11:10 AM Changeset [2052] by olle
Refs #471. Library preparation information in 'Case Summary' updated …
7:59 AM Changeset [2051] by olle
Refs #471. Library preparation information in 'Case Summary' updated …

Oct 8, 2013:

12:31 PM Ticket #514 (Do not enter date if time is missing in specimen tube registration) created by nicklas
Ticket #437 made a few changes to how date and times are validated in …

Oct 7, 2013:

4:46 PM Changeset [2050] by olle
Refs #471. First version of library preparation information in 'Case …
3:38 PM Changeset [2049] by nicklas
References #481: Register prepared flow cells The wizard now creates …
1:11 PM Ticket #513 (Make it easier to spot problems in installation wizard) closed by nicklas
fixed: (In [2048]) Fixes #513: Make it easier to spot problems in …
1:11 PM Changeset [2048] by nicklas
Fixes #513: Make it easier to spot problems in installation wizard …
11:45 AM Ticket #513 (Make it easier to spot problems in installation wizard) created by nicklas
The number of items created in the installation wizard is now really …
11:27 AM Changeset [2047] by olle
Refs #501. Lab protocol for clustering updated in JSP script …
11:17 AM Changeset [2046] by olle
Refs #501. Lab protocol for clustering updated in JSP script …
11:07 AM Changeset [2045] by nicklas
References #502: Design flow cells Added support for adding comments …
9:27 AM Changeset [2044] by nicklas
References #512: Updates to the register pooled libraries wizard …
9:26 AM Ticket #512 (Updates to the register pooled libraries wizard) created by nicklas
The first version was implemented in #480. Due to changes in the …
8:47 AM Changeset [2043] by nicklas
References #503: Change pooling strategy Fixed bug in volume …

Oct 4, 2013:

1:51 PM Changeset [2042] by nicklas
References #503: Change pooling strategy Added support for writing …
12:50 PM net.sf.basedb.reggie.notes213 edited by nicklas
Removing section about the need to register pools since it is no … (diff)
12:47 PM Changeset [2041] by nicklas
References #503: Change pooling strategy Implemented option to select …

Oct 3, 2013:

3:32 PM Changeset [2040] by nicklas
References #503: Change pooling strategy Better handling of the …
2:54 PM Ticket #509 (Error icons after successful registration of caliper lib results) closed by olle
fixed: Ticket closed after successful passing of local test.
2:47 PM Changeset [2039] by olle
Refs #509. JSP script lib_registration.jsp in …
11:29 AM Ticket #506 (Installation wizard doesn't check if biomaterial list is shared) closed by olle
fixed: (In [2038]) Fixes #506. Installation wizard updated to check if …
11:29 AM Changeset [2038] by olle
Fixes #506. Installation wizard updated to check if biomaterial is …
9:40 AM net.sf.basedb.reggie.notes213 edited by nicklas
Clarifying that only item 1 need to be done before installing the update (diff)
9:37 AM Ticket #511 (Consent information not copied from PreNeo blood registration) closed by nicklas
fixed: Added instructions for manually copying consent informatio. See …
9:36 AM net.sf.basedb.reggie.notes213 edited by nicklas
Adding note about fixing missing consent annotations on cases (diff)
9:23 AM Changeset [2037] by nicklas
References #511: Consent information not copied from PreNeo? blood …
8:20 AM Changeset [2036] by olle
Refs #449. Javascript file reggie.js in reggie/resources/ updated …

Oct 2, 2013:

4:07 PM Changeset [2035] by olle
Refs #501. Lab protocol for clustering updated in JSP script …
3:41 PM Ticket #511 (Consent information not copied from PreNeo blood registration) created by nicklas
It seems like registering information from a patient in the following …
2:50 PM Changeset [2034] by olle
Refs #501. Directory that was erroneously copied in changeset 2033 is …
2:13 PM Changeset [2033] by olle
Refs #501. First version of wizard for clustering lab protocol.
1:57 PM Ticket #507 ('dil' items are created with incorrect value for PoolConc annotation) closed by nicklas
fixed: Added instructions for manually fixing issues PoolConc values. See …
1:56 PM net.sf.basedb.reggie.notes213 edited by nicklas
Adding note about fixing PoolConc? annotations (diff)
1:29 PM Ticket #508 (Library plates remain in the 'Create pooled libraries' wizard after ...) closed by nicklas
fixed: Added instructions for manually fixing issues with library and RNA …
1:27 PM net.sf.basedb.reggie.notes213 edited by nicklas
More instructions for the manual fix for #508 (diff)
11:50 AM net.sf.basedb.reggie.notes213 edited by nicklas
Adding note about flagging some libraries (diff)
11:47 AM Changeset [2032] by nicklas
References #508: Library plates remain in the 'Create pooled …

Oct 1, 2013:

2:07 PM Changeset [2031] by nicklas
References #481: Register prepared flow cells Added fields for …

Sep 30, 2013:

2:42 PM Changeset [2030] by nicklas
References #499: Export sample sheet for flow cell The exporter now …
2:01 PM Changeset [2029] by nicklas
References #502: Design flow cells Re-enable call to dc.commit() …
1:59 PM Changeset [2028] by nicklas
References #502: Design flow cells Added "ReadString?" field and …
9:57 AM Ticket #510 (Consistent use of terms in the lab protocols and Reggie interface) created by nicklas
The lab personnel has noted that in some cases names and terms for …
9:43 AM net.sf.basedb.reggie.notes213 edited by nicklas
Important note about updating (diff)
9:38 AM Ticket #504 (Allow target volume/library in a pool to be changed) closed by nicklas
fixed: Fixed in [2027] as part of #503.
9:36 AM Changeset [2027] by nicklas
References #503: Change pooling strategy The new implementation works …

Sep 27, 2013:

2:30 PM Ticket #509 (Error icons after successful registration of caliper lib results) created by nicklas
The Library registration wizard display error icons for all …
2:28 PM Ticket #508 (Library plates remain in the 'Create pooled libraries' wizard after ...) created by nicklas
For some reason the Create pooled libraries wizard on production …
9:27 AM net.sf.basedb.reggie.notes213 created by nicklas
Adding page with update notes for 2.13
9:25 AM net.sf.basedb.reggie edited by nicklas
Link to update notes regarding #507 (diff)
9:22 AM Ticket #507 ('dil' items are created with incorrect value for PoolConc annotation) created by nicklas
There is a bug when calculating concentrations for the extra 'dil' …

Sep 26, 2013:

9:03 AM Ticket #506 (Installation wizard doesn't check if biomaterial list is shared) created by nicklas
The installation wizard create the "Flagged RNA" biomaterial list …

Sep 25, 2013:

4:11 PM Ticket #79 (Center on assay (se.lu.onk.Center)) closed by olle
fixed: Ticket closed since the desired functionality has been added.
4:09 PM Changeset [2026] by olle
Refs #79. Center plug-in updated to allow centering using different …
2:29 PM Changeset [2025] by nicklas
References #504: Allow target volume/library in a pool to be changed …

Sep 20, 2013:

2:56 PM Ticket #505 (Sample source reports should be updated to support follow-up blood samples) closed by olle
fixed: Ticket closed as the requested functionality has been added.
2:55 PM Ticket #449 (Add support for follow-up blood samples to the blood registration wizard) closed by olle
fixed: Ticket closed as the requested functionality has been added.
2:51 PM Changeset [2024] by olle
Refs #505. Refs #449. Sample source reports updated to support …

Sep 19, 2013:

4:36 PM Changeset [2023] by olle
Refs #449. Refs #505. First version of wizard for registration/update …
10:01 AM Ticket #505 (Sample source reports should be updated to support follow-up blood samples) created by olle
Sample source reports should be updated to support follow-up blood …

Sep 18, 2013:

1:49 PM Ticket #504 (Allow target volume/library in a pool to be changed) created by nicklas
Currently, the target volume for each library in a pool is fixed at …
1:42 PM Ticket #503 (Change pooling strategy) created by nicklas
The current pooling protocol has a problem with libraries that have a …
1:25 PM Ticket #502 (Design flow cells) created by nicklas
Was part of ticket #481, but split up into a design and a registration …
1:22 PM Ticket #501 (Generate lab protocol for clustering) created by nicklas
After flow cells have been designed (Create flow cell wizard, #502) it …

Sep 17, 2013:

2:46 PM Ticket #500 (Plugin configurations should be grouped below their plug-ins) closed by nicklas
fixed: (In [2022]) Fixes #500: Plugin configurations should be grouped below …
2:46 PM Changeset [2022] by nicklas
Fixes #500: Plugin configurations should be grouped below their plug-ins
1:08 PM Ticket #500 (Plugin configurations should be grouped below their plug-ins) created by nicklas
The installation wizard have two separate sections for plug-ins and …
1:05 PM Changeset [2021] by nicklas
References #499: Export sample sheet for flow cell First …
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