Timeline



Jun 14, 2012:

3:32 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 2.7-beta2 (diff)
3:31 PM reggie-2.7-beta2.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 2.7-beta2
3:30 PM Changeset [1709] by Nicklas Nordborg
Tagging Reggie 2.7-beta2
3:30 PM Changeset [1708] by Nicklas Nordborg
Preparing release Reggie 2.7-beta2
3:20 PM Ticket #408 (Caliper importer should import NA values as -100) closed by Nicklas Nordborg
fixed: (In [1707]) Fixes #408: Caliper importer should import NA values as -100
3:20 PM Changeset [1707] by Nicklas Nordborg
Fixes #408: Caliper importer should import NA values as -100
2:59 PM Ticket #408 (Caliper importer should import NA values as -100) created by Nicklas Nordborg
We recently got an output file with "NA" in the RQS column. This …
2:56 PM Ticket #407 (Cannot import Caliper result if a QCRunDate is given) closed by Nicklas Nordborg
fixed: (In [1706]) Fixes #407: Cannot import Caliper result if a QCRunDate is …
2:56 PM Changeset [1706] by Nicklas Nordborg
Fixes #407: Cannot import Caliper result if a QCRunDate is given
2:53 PM Ticket #407 (Cannot import Caliper result if a QCRunDate is given) updated by Nicklas Nordborg
Seems like the import was broken by #380 and has been around since …
2:07 PM Ticket #407 (Cannot import Caliper result if a QCRunDate is given) created by Nicklas Nordborg
The Caliper importer only works if the QC Run Date is left empty. …
9:20 AM Changeset [1705] by Nicklas Nordborg
Preparing for future release MeV Launcher 1.11
9:19 AM Milestone MeV Launcher 1.10 completed
For more information see the [wiki:net.sf.basedb.mev MEV Launcher …
9:18 AM PluginDownload edited by Nicklas Nordborg
Released MeV Launcher 1.10 (diff)
9:17 AM net.sf.basedb.mev edited by Nicklas Nordborg
Released MeV Launcher 1.10 (diff)
9:13 AM mev-launcher-1.10.tar.gz attached to net.sf.basedb.mev by Nicklas Nordborg
MeV Launcher 1.10
9:12 AM Changeset [1704] by Nicklas Nordborg
Tagging MeV launcher 1.10
9:12 AM Changeset [1703] by Nicklas Nordborg
Preparing for MeV launcher 1.10 release.
9:08 AM Ticket #406 (Update to MeV 4.8) closed by Nicklas Nordborg
fixed: (In [1702]) Fixes #406: Update to MeV 4.8
9:08 AM Changeset [1702] by Nicklas Nordborg
Fixes #406: Update to MeV 4.8
9:00 AM Ticket #406 (Update to MeV 4.8) updated by Nicklas Nordborg
Status changed
9:00 AM Ticket #406 (Update to MeV 4.8) created by Nicklas Nordborg

Jun 13, 2012:

3:00 PM Ticket #405 (Update certificate used for signing the web start files) closed by Nicklas Nordborg
fixed: (In [1701]) Fixes #405: Update certificate used for signing the web …
3:00 PM Changeset [1701] by Nicklas Nordborg
Fixes #405: Update certificate used for signing the web start files
2:45 PM Ticket #405 (Update certificate used for signing the web start files) updated by Nicklas Nordborg
Status changed
2:45 PM Ticket #405 (Update certificate used for signing the web start files) created by Nicklas Nordborg
The following warning message is displayed when compiling: […]
2:40 PM Ticket #403 (NullPointerException when using the TDMS exporter) closed by Nicklas Nordborg
fixed: (In [1700]) Fixes #403: NullPointerException when using the TDMS exporter
2:40 PM Changeset [1700] by Nicklas Nordborg
Fixes #403: NullPointerException when using the TDMS exporter

Jun 12, 2012:

3:05 PM Ticket #400 (Update NoSpecimen items with values for laterality) closed by johan
fixed
3:04 PM Ticket #400 (Update NoSpecimen items with values for laterality) updated by johan
Updated laterality for NoSpeciment items using laterality from paren …
1:49 PM Ticket #372 (Generate lab protocol for FFPE) updated by Nicklas Nordborg
(In [1699]) References #372: Generate lab protocol for FFPE Tried to …
1:49 PM Changeset [1699] by Nicklas Nordborg
References #372: Generate lab protocol for FFPE Tried to make the …

Jun 11, 2012:

11:37 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 2.7-beta (diff)
11:35 AM reggie-2.7-beta.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 2.7-beta
11:35 AM Changeset [1698] by Nicklas Nordborg
Tagging Reggie 2.7-beta
11:34 AM Changeset [1697] by Nicklas Nordborg
Preparing for Reggie 2.7-beta release
11:34 AM Changeset [1696] by Nicklas Nordborg
Disable debug output.
11:22 AM Ticket #373 (Register HE glass and histology child items) updated by Nicklas Nordborg
(In [1695]) References #373: Register HE glass and histology child …
11:22 AM Changeset [1695] by Nicklas Nordborg
References #373: Register HE glass and histology child items Added …

Jun 8, 2012:

3:29 PM Ticket #373 (Register HE glass and histology child items) updated by Nicklas Nordborg
(In [1694]) References #373: Register HE glass and histology child …
3:29 PM Changeset [1694] by Nicklas Nordborg
References #373: Register HE glass and histology child items Added …
2:14 PM Ticket #404 (Record if more than one piece has been used for Allprep) closed by Nicklas Nordborg
fixed: (In [1693]) Fixes #404: Record if more than one piece has been used …
2:14 PM Changeset [1693] by Nicklas Nordborg
Fixes #404: Record if more than one piece has been used for Allprep
11:12 AM Ticket #371 (Wizard that move histology samples to paraffin blocks) updated by Nicklas Nordborg
(In [1692]) References #371: Wizard that move histology samples to …
11:12 AM Changeset [1692] by Nicklas Nordborg
References #371: Wizard that move histology samples to paraffin blocks …

Jun 7, 2012:

2:00 PM Ticket #404 (Record if more than one piece has been used for Allprep) created by Nicklas Nordborg
In the partition wizard it should be possible to record if more than …
12:47 PM Ticket #372 (Generate lab protocol for FFPE) updated by Nicklas Nordborg
(In [1691]) References #372: Generate lab protocol for FFPE Added …
12:47 PM Changeset [1691] by Nicklas Nordborg
References #372: Generate lab protocol for FFPE Added function to …
10:27 AM Ticket #372 (Generate lab protocol for FFPE) updated by Nicklas Nordborg
(In [1690]) References #372: Generate lab protocol for FFPE Added HE …
10:27 AM Changeset [1690] by Nicklas Nordborg
References #372: Generate lab protocol for FFPE Added HE glass name …
8:54 AM Ticket #403 (NullPointerException when using the TDMS exporter) created by Nicklas Nordborg
From the mailing list: …

Jun 5, 2012:

3:17 PM Ticket #402 (Default protocol selection) closed by Nicklas Nordborg
fixed: (In [1689]) Fixes #402: Default protocol selection This has now been …
3:17 PM Changeset [1689] by Nicklas Nordborg
Fixes #402: Default protocol selection This has now been fixed in the …
1:33 PM Ticket #400 (Update NoSpecimen items with values for laterality) updated by Nicklas Nordborg
Owner changed
1:32 PM Ticket #393 (Change default value for protocol in "RNA quality control - create ...) closed by Nicklas Nordborg
duplicate: Replaced with #402.
1:31 PM Ticket #402 (Default protocol selection) created by Nicklas Nordborg
This ticket replaces #393. We have decided to use a the 'project …
12:40 PM Ticket #372 (Generate lab protocol for FFPE) updated by Nicklas Nordborg
(In [1688]) References #372: Generate lab protocol for FFPE Rename …
12:40 PM Changeset [1688]
This is an empty revision for padding.
12:39 PM Ticket #373 (Register HE glass and histology child items) updated by Nicklas Nordborg
(In [1687]) References #373: Register HE glass and histology child …
12:39 PM Changeset [1687] by Nicklas Nordborg
References #373: Register HE glass and histology child items Fixes …
11:59 AM Ticket #393 (Change default value for protocol in "RNA quality control - create ...) updated by Nicklas Nordborg
We have decided to use a the 'project default' function for this. Eg. …

Jun 4, 2012:

2:01 PM Ticket #373 (Register HE glass and histology child items) updated by Nicklas Nordborg
(In [1686]) References #373: Register HE glass and histology child …
2:01 PM Changeset [1686] by Nicklas Nordborg
References #373: Register HE glass and histology child items Added …
1:50 PM Tickets #371,​372,​373 batch updated by Nicklas Nordborg
(In [1685]) References #371, #372 and #373. Synchonized names with …
1:50 PM Changeset [1685] by Nicklas Nordborg
References #371, #372 and #373. Synchonized names with existing items …
12:47 PM Tickets #371,​372 batch updated by Nicklas Nordborg
(In [1684]) References #371 and #372. Create (empty) paraffin block …
12:47 PM Changeset [1684] by Nicklas Nordborg
References #371 and #372. Create (empty) paraffin block plates at the …

Jun 1, 2012:

3:35 PM Ticket #371 (Wizard that move histology samples to paraffin blocks) updated by Nicklas Nordborg
(In [1683]) References #371: Wizard that move histology samples to …
3:35 PM Changeset [1683] by Nicklas Nordborg
References #371: Wizard that move histology samples to paraffin blocks …
2:39 PM Ticket #393 (Change default value for protocol in "RNA quality control - create ...) reopened by Nicklas Nordborg
There are now multiple Caliper protocol versions. […] The …
1:27 PM Ticket #372 (Generate lab protocol for FFPE) updated by Nicklas Nordborg
(In [1682]) References #372: Generate lab protocol for FFPE Sorting …
1:27 PM Changeset [1682] by Nicklas Nordborg
References #372: Generate lab protocol for FFPE Sorting on MySQL …
11:34 AM Ticket #372 (Generate lab protocol for FFPE) updated by Nicklas Nordborg
(In [1681]) References #372: Generate lab protocol for FFPE This …
11:34 AM Changeset [1681] by Nicklas Nordborg
References #372: Generate lab protocol for FFPE This wizard now …
11:31 AM Ticket #372 (Generate lab protocol for FFPE) updated by Nicklas Nordborg
Description changed

May 31, 2012:

2:06 PM Ticket #401 (Add 'case' column to the montly operation list export) updated by Nicklas Nordborg
(In [1680]) References #401: Add 'case' column to the montly operation …
2:06 PM Changeset [1680] by Nicklas Nordborg
References #401: Add 'case' column to the montly operation list export …
1:48 PM Ticket #401 (Add 'case' column to the montly operation list export) closed by Nicklas Nordborg
fixed: (In [1679]) Fixes #401: Add 'case' column to the montly operation list …
1:48 PM Changeset [1679] by Nicklas Nordborg
Fixes #401: Add 'case' column to the montly operation list export
1:40 PM Ticket #401 (Add 'case' column to the montly operation list export) created by Nicklas Nordborg
Requested by the Tumor registry.
11:45 AM Ticket #400 (Update NoSpecimen items with values for laterality) updated by Nicklas Nordborg
Description changed
11:42 AM net.sf.basedb.reggie.notes27 edited by Nicklas Nordborg
(diff)
11:27 AM net.sf.basedb.reggie.notes27 created by Nicklas Nordborg
Adding page about updating to reggie 2.7
11:11 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Adding page about updating to reggie 2.7 (diff)
10:53 AM Ticket #394 (Change weight table order in Partition wizard) closed by Nicklas Nordborg
fixed: (In [1678]) Fixes #394: Change weight table order in Partition wizard
10:53 AM Changeset [1678] by Nicklas Nordborg
Fixes #394: Change weight table order in Partition wizard
9:54 AM Ticket #399 (Registration wizard should store laterality on NoSpecimen items) closed by Nicklas Nordborg
fixed: (In [1677]) Fixes #399: Registration wizard should store laterality on …
9:54 AM Changeset [1677] by Nicklas Nordborg
Fixes #399: Registration wizard should store laterality on NoSpecimen items
9:46 AM Ticket #400 (Update NoSpecimen items with values for laterality) created by Nicklas Nordborg
The NoSpecimen items are stored without values for laterality. This …
9:37 AM Ticket #398 (Add option to export the monthly operation list for a full year) closed by Nicklas Nordborg
fixed: (In [1676]) Fixes #398: Add option to export the monthly operation …
9:37 AM Changeset [1676] by Nicklas Nordborg
Fixes #398: Add option to export the monthly operation list for a full …

May 30, 2012:

11:37 AM Ticket #399 (Registration wizard should store laterality on NoSpecimen items) created by Nicklas Nordborg
10:00 AM Ticket #395 (Add 'laterality' column to the montly operation list export) updated by Nicklas Nordborg
(In [1675]) References #395: Add 'laterality' column to the montly …
10:00 AM Changeset [1675] by Nicklas Nordborg
References #395: Add 'laterality' column to the montly operation list …
9:57 AM Ticket #398 (Add option to export the monthly operation list for a full year) updated by Nicklas Nordborg
(In [1674]) References #398: Add option to export the monthly …
9:57 AM Changeset [1674] by Nicklas Nordborg
References #398: Add option to export the monthly operation list for a …
9:17 AM Ticket #397 (Add option to export item subtype in the monthly operation list) closed by Nicklas Nordborg
fixed: (In [1673]) Fixes #397: Add option to export item subtype in the …
9:17 AM Changeset [1673] by Nicklas Nordborg
Fixes #397: Add option to export item subtype in the monthly operation list
9:16 AM Ticket #398 (Add option to export the monthly operation list for a full year) created by Nicklas Nordborg
9:04 AM Ticket #397 (Add option to export item subtype in the monthly operation list) created by Nicklas Nordborg
The last column should be either Specimen or NoSpecimen.
9:02 AM Ticket #395 (Add 'laterality' column to the montly operation list export) closed by Nicklas Nordborg
fixed: (In [1672]) Fixes #395: Add 'laterality' column to the montly …
9:02 AM Changeset [1672] by Nicklas Nordborg
Fixes #395: Add 'laterality' column to the montly operation list export
8:43 AM Ticket #393 (Change default value for protocol in "RNA quality control - create ...) closed by Nicklas Nordborg
fixed: (In [1671]) Fixes #393: Change default value for protocol in "RNA …
8:43 AM Changeset [1671] by Nicklas Nordborg
Fixes #393: Change default value for protocol in "RNA quality control …

May 29, 2012:

2:11 PM Ticket #396 (Use tab instead of comma as column separator for the monthly operation ...) closed by Nicklas Nordborg
fixed: (In [1670]) Fixes #396: Use tab instead of comma as column separator …
2:11 PM Changeset [1670] by Nicklas Nordborg
Fixes #396: Use tab instead of comma as column separator for the …
1:39 PM Ticket #372 (Generate lab protocol for FFPE) updated by Nicklas Nordborg
(In [1669]) References #372: Generate lab protocol for FFPE This …
1:39 PM Changeset [1669] by Nicklas Nordborg
References #372: Generate lab protocol for FFPE This wizard has now …
12:42 PM Ticket #396 (Use tab instead of comma as column separator for the monthly operation ...) created by Nicklas Nordborg
12:40 PM Ticket #395 (Add 'laterality' column to the montly operation list export) created by Nicklas Nordborg
11:38 AM Ticket #371 (Wizard that move histology samples to paraffin blocks) updated by Nicklas Nordborg
Description changed
11:28 AM Ticket #372 (Generate lab protocol for FFPE) updated by Nicklas Nordborg
Description changed
10:46 AM Ticket #394 (Change weight table order in Partition wizard) created by Jari Häkkinen
The new preferred order is Allprep, His, Sp.
10:41 AM Ticket #393 (Change default value for protocol in "RNA quality control - create ...) created by Jari Häkkinen
The default protocol 'Caliper'

May 25, 2012:

1:50 PM Ticket #373 (Register HE glass and histology child items) updated by Nicklas Nordborg
(In [1668]) References #373: Register HE glass and histology child …
1:50 PM Changeset [1668] by Nicklas Nordborg
References #373: Register HE glass and histology child items The …

May 23, 2012:

9:33 AM Ticket #372 (Generate lab protocol for FFPE) updated by Nicklas Nordborg
(In [1667]) References #372: Generate lab protocol for FFPE Cleaning …
9:33 AM Changeset [1667] by Nicklas Nordborg
References #372: Generate lab protocol for FFPE Cleaning up the code …
9:01 AM Tickets #371,​372,​373 batch updated by Nicklas Nordborg
(In [1666]) References #371, #372, #373. Fix things that was …
9:01 AM Changeset [1666] by Nicklas Nordborg
References #371, #372, #373. Fix things that was removed/disabled in …
8:58 AM Ticket #373 (Register HE glass and histology child items) updated by Nicklas Nordborg
Status changed

May 22, 2012:

2:38 PM Changeset [1665] by Nicklas Nordborg
Preparing for future release Reggie 2.7
2:36 PM Milestone Reggie v2.6 completed
See Reggie extension page for more information.
2:36 PM PluginDownload edited by Nicklas Nordborg
Released Reggie 2.6 (diff)
2:35 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 2.6 (diff)
2:33 PM reggie-2.6.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 2.6
2:33 PM Ticket #386 (Qiacube/nanodrop wizard) closed by Nicklas Nordborg
fixed
2:32 PM Changeset [1664] by Nicklas Nordborg
Tagging Reggie 2.6
2:32 PM Changeset [1663] by Nicklas Nordborg
Preparing release Reggie 2.6
2:22 PM Ticket #388 (Lysate/Qiacube/NanoDrop lab tracking protocol) updated by Nicklas Nordborg
(In [1662]) References #388: Lysate/Qiacube/NanoDrop lab tracking …
2:22 PM Changeset [1662] by Nicklas Nordborg
References #388: Lysate/Qiacube/NanoDrop lab tracking protocol …
12:55 PM Changeset [1661] by Nicklas Nordborg
No top and bottom margins in the bullet lists on the index page.
11:30 AM Ticket #392 (Redesign reggie wizards that result in long pages) closed by Nicklas Nordborg
fixed: The most critical wizards have been fixed. The specimen tube …
11:26 AM Ticket #386 (Qiacube/nanodrop wizard) updated by Nicklas Nordborg
Description changed
11:24 AM Ticket #388 (Lysate/Qiacube/NanoDrop lab tracking protocol) closed by Nicklas Nordborg
fixed
11:12 AM Ticket #386 (Qiacube/nanodrop wizard) updated by Nicklas Nordborg
(In [1660]) References #386: Qiacube/nanodrop wizard Add link to the …
11:12 AM Changeset [1660] by Nicklas Nordborg
References #386: Qiacube/nanodrop wizard Add link to the 'Create …

May 21, 2012:

3:39 PM Ticket #392 (Redesign reggie wizards that result in long pages) updated by Nicklas Nordborg
(In [1659]) References #392: Redesign reggie wizards that result in …
3:39 PM Changeset [1659] by Nicklas Nordborg
References #392: Redesign reggie wizards that result in long pages …
3:11 PM Ticket #392 (Redesign reggie wizards that result in long pages) updated by Nicklas Nordborg
(In [1658]) References #392: Redesign reggie wizards that result in …
3:11 PM Changeset [1658] by Nicklas Nordborg
References #392: Redesign reggie wizards that result in long pages …
8:48 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 2.6-beta2 (diff)
8:47 AM reggie-2.6-beta2.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 2.6-beta2
8:46 AM Changeset [1657] by Nicklas Nordborg
Tagging Reggie 2.6-beta2
8:46 AM Changeset [1656] by Nicklas Nordborg
Preparing release Reggie 2.6-beta2
8:44 AM Ticket #386 (Qiacube/nanodrop wizard) updated by Nicklas Nordborg
(In [1655]) References #386: Qiacube/nanodrop wizard Move the …
8:44 AM Changeset [1655] by Nicklas Nordborg
References #386: Qiacube/nanodrop wizard Move the 'Storage position' …

May 16, 2012:

3:05 PM Ticket #386 (Qiacube/nanodrop wizard) updated by Nicklas Nordborg
(In [1654]) References #386: Qiacube/nanodrop wizard The "generate …
3:05 PM Changeset [1654] by Nicklas Nordborg
References #386: Qiacube/nanodrop wizard The "generate fake data" …
3:00 PM Ticket #386 (Qiacube/nanodrop wizard) updated by Nicklas Nordborg
(In [1653]) References #386: Qiacube/nanodrop wizard Some more …
3:00 PM Changeset [1653] by Nicklas Nordborg
References #386: Qiacube/nanodrop wizard Some more enhancements to …
2:03 PM Ticket #392 (Redesign reggie wizards that result in long pages) updated by Nicklas Nordborg
(In [1652]) References #392: Redesign reggie wizards that result in …
2:03 PM Changeset [1652] by Nicklas Nordborg
References #392: Redesign reggie wizards that result in long pages …
11:32 AM Ticket #392 (Redesign reggie wizards that result in long pages) updated by Nicklas Nordborg
(In [1651]) References #392: Redesign reggie wizards that result in …
11:32 AM Changeset [1651] by Nicklas Nordborg
References #392: Redesign reggie wizards that result in long pages …
11:31 AM Ticket #389 (The partition wizard should not allow missing weights in some cases) updated by Nicklas Nordborg
(In [1650]) References #389: The partition wizard should not allow …
11:31 AM Changeset [1650] by Nicklas Nordborg
References #389: The partition wizard should not allow missing weights …
11:25 AM Ticket #392 (Redesign reggie wizards that result in long pages) updated by Nicklas Nordborg
(In [1649]) References #392: Redesign reggie wizards that result in …
11:25 AM Changeset [1649] by Nicklas Nordborg
References #392: Redesign reggie wizards that result in long pages …
9:46 AM Ticket #386 (Qiacube/nanodrop wizard) updated by Nicklas Nordborg
(In [1648]) References #386: Qiacube/nanodrop wizard Some minor …
9:46 AM Changeset [1648] by Nicklas Nordborg
References #386: Qiacube/nanodrop wizard Some minor changes to the …
8:17 AM Ticket #386 (Qiacube/nanodrop wizard) updated by Nicklas Nordborg
(In [1647]) References #386: Qiacube/nanodrop wizard Fixes an issue …
8:17 AM Changeset [1647] by Nicklas Nordborg
References #386: Qiacube/nanodrop wizard Fixes an issue with parsing …

May 15, 2012:

12:51 PM Ticket #392 (Redesign reggie wizards that result in long pages) updated by Nicklas Nordborg
Status changed
11:31 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 2.6-beta (diff)
11:29 AM reggie-2.6-beta.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 2.6-beta
11:29 AM Changeset [1646] by Nicklas Nordborg
Tagging Reggie 2.6-beta
11:28 AM Changeset [1645] by Nicklas Nordborg
Preparing release Reggie 2.6-beta
10:18 AM Ticket #390 (Search for subtype and annotation type among proper main item type) updated by Nicklas Nordborg
(In [1644]) References #390: Search for subtype and annotation type …
10:18 AM Changeset [1644] by Nicklas Nordborg
References #390: Search for subtype and annotation type among proper …
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