Timeline


and

Mar 31, 2009:

1:12 PM Ticket #194 (Default export file names should be more unique) created by jari
I am using the brilliant MeV extension. BASE creates the TDMS file …
11:11 AM Changeset [1018] by nicklas
Changes for future release 1.3
11:09 AM Milestone MEV Launcher v1.2 completed
Bug fixes for MEV Launcher 1.1. See [wiki:net.sf.basedb.mev MEV …
11:09 AM net.sf.basedb.mev edited by nicklas
Releasing MeV Launcher 1.2 (diff)
11:06 AM mev-launcher-1.2.tar.gz attached to net.sf.basedb.mev by nicklas
MeV Launcher 1.2
11:05 AM Changeset [1017] by nicklas
Tagging MeV Launcher 1.2
11:04 AM Changeset [1016] by nicklas
Preparing release of MeV Launcher 1.2
10:57 AM Ticket #192 (MeV unable to launch appplication ... class not found exception) closed by nicklas
duplicate: Seems like this problem was fixed by #193.
9:03 AM Changeset [1015] by nicklas
Fixes #193: Use one JNLP file for each pre-signed JAR file
9:03 AM Ticket #193 (Use one JNLP file for each pre-signed JAR file) closed by nicklas
fixed: (In [1015]) Fixes #193: Use one JNLP file for each pre-signed JAR file
8:08 AM Ticket #193 (Use one JNLP file for each pre-signed JAR file) created by nicklas
According to the JNLP specification all JAR:s that are referenced in a …

Mar 30, 2009:

6:40 PM Changeset [1014] by jari
Fixes #191. Added standard options and also assay annotation data file …
6:40 PM Ticket #191 (net.sf.basedb.normalizers: qQN should support standard options ...) closed by jari
fixed: (In [1014]) Fixes #191. Added standard options and also assay …
3:24 PM Ticket #192 (MeV unable to launch appplication ... class not found exception) created by jari
I cannot launch MeV with the BASE 2.11.0. I have pasted the stack …
10:48 AM PluginDownload edited by nicklas
(diff)
10:47 AM Changeset [1013] by nicklas
Preparing for future release 1.2
10:46 AM Milestone MEV Launcher v1.1 completed
This release of the MEV Launcher is focused on upgrading to MeV 4.3. …
10:45 AM Ticket #162 (Upgrade to MeV 4.3) closed by nicklas
fixed
10:45 AM net.sf.basedb.mev edited by nicklas
Releasing MeV Launcher 1.1 (diff)
10:38 AM Changeset [1012] by nicklas
Tagging version 1.1
10:37 AM Changeset [1011] by nicklas
Preparing release 1.1
10:00 AM Changeset [1010] by nicklas
References #162: Upgrade to MeV 4.3 Fixes some problems when starting …
9:59 AM Ticket #191 (net.sf.basedb.normalizers: qQN should support standard options ...) created by jari
--version and --help
9:57 AM Changeset [1009] by jari
Removed non-used configure options inherited from the WeNNI package.
9:56 AM Ticket #190 (net.sf.basedb.normalizers: Add target that tries to build qQN if requested) created by jari
Something like 'ant qQN' should try to create an qQN binary and place …
9:40 AM Ticket #186 (qQuantileNormalizer method storeResult must be reimplemented) closed by jari
fixed: As of changeset:1000 storeResult takes a SpotBatcher that is used to …
8:31 AM Changeset [1008] by jari
Clarified where the recommended install directory is located.

Mar 27, 2009:

10:59 PM Changeset [1007] by jari
metadata is split into reporter and assay metadata. Added flags to …
10:57 PM Changeset [1006] by jari
metadata is split into reporter and assay metadata.
9:51 PM Changeset [1005] by jari
storeValues typo! Plural importantsvn diff
7:36 PM Changeset [1004] by jari
Removed warning suppressions, clean up of code, added missing …
5:07 PM Changeset [1003] by jari
Added support to select assays ... but the select is not used yet.
5:06 PM Changeset [1002] by jari
Added support to optionally select assays.
3:48 PM Changeset [1001] by jari
Minor changes to debug_option.
3:37 PM Changeset [1000] by jari
storeResult interface change, some code moved to super class.
3:35 PM Changeset [999] by jari
Restructured result storage.
11:05 AM Changeset [998] by jari
Addresses #118 and #183. Moved export of data to an export method.

Mar 26, 2009:

4:27 PM Ticket #159 (Create a se.lu.onk.VirtualArray module) closed by jari
fixed: Fixed as of changeset:997
4:22 PM VirtualArray-1.1.tgz.MD5 attached to se.lu.onk.VirtualArray by jari
4:22 PM VirtualArray-1.1.tgz attached to se.lu.onk.VirtualArray by jari
4:22 PM se.lu.onk.VirtualArray created by jari
First version of VirtualArray? page
4:19 PM PluginDownload edited by jari
Typos. (diff)
4:18 PM PluginDownload edited by jari
Adding Virtual Array to donwload list. (diff)
4:14 PM Changeset [997] by jari
Tagging version 1.1 of VirtualArray?.
4:13 PM Changeset [996] by jari
Preparing release 1.1 of VirtualArray?.
11:14 AM Ticket #189 (Add toolbar extension examples) created by nicklas
BASE 2.12 will add extension points in a lot of toobars. We should …

Mar 25, 2009:

8:48 AM Changeset [995] by nicklas
References #162: Upgrade to MeV 4.3 Got rid of hardcoded 'http' in …
8:46 AM Changeset [994] by nicklas
References #162: Upgrade to MeV 4.3 Fixes a problem that prevented …

Mar 24, 2009:

3:15 PM Ticket #188 (Add IGV as an extension similarly to MEV) created by base
The IGV tool found at http://www.broad.mit.edu/igv/index.html is a …

Mar 16, 2009:

9:26 AM se.lu.onk.BAFsegmentation edited by markus
(diff)

Mar 14, 2009:

3:06 PM Ticket #187 (qQuantileNormalizer should allow user to select the normaliztion ...) created by jari
There are several ways to normalize the data. The user should select a …
3:03 PM Ticket #186 (qQuantileNormalizer method storeResult must be reimplemented) created by jari
Many things done in this method should move into the abstract base class.
3:02 PM Ticket #185 (External binary plugins should be interruptable from BASE.) created by jari
3:00 PM Ticket #184 (qQuantileNormalizer should update progress bar) created by jari
2:58 PM Changeset [993] by jari
Addresses #118. First version of working qQuantileNormalizer.
2:52 PM net.sf.basedb.pluginutilties edited by jari
(diff)
2:46 PM net.sf.basedb.pluginutilties edited by jari
(diff)
2:43 PM Changeset [992] by jari
Require BASE 2.5. Restructure build script.
1:50 PM Changeset [991] by jari
Minor things.
1:50 PM Changeset [990] by jari
Typo.
1:15 PM Ticket #183 (Change result storage of qQuantilNormalizer when BASE bioassay set ...) created by jari
Relates to http://base.thep.lu.se/ticket/742 and …
11:55 AM Changeset [989] by jari
Missing values from BASE are empty fields, need to define field …

Mar 13, 2009:

6:31 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
6:16 PM se.lu.onk.BAFsegmentation edited by markus
(diff)
6:15 PM se.lu.onk.BAFsegmentation edited by markus
(diff)

Mar 11, 2009:

11:02 AM Changeset [988] by nicklas
Changes for future release 1.1
11:01 AM Milestone FTP Server v1.0 completed
Implement an FTP Server as an extension to the web client. For more …
10:57 AM PluginDownload edited by nicklas
(diff)
10:53 AM net.sf.basedb.ftp edited by nicklas
Releasing FTP Server 1.0 (diff)
10:44 AM base-ftpserver-1.0.tar.gz attached to net.sf.basedb.ftp by nicklas
BASE FTP Server Extension 1.0
10:42 AM Changeset [987] by nicklas
Tagging release 1.0
10:41 AM Changeset [986] by nicklas
Preparing release 1.0
10:01 AM Changeset [985] by nicklas
Fixes #127: Update to final release of Apache Mina FTP server
10:01 AM Ticket #127 (Update to final release of Apache Mina FTP server) closed by nicklas
fixed: (In [985]) Fixes #127: Update to final release of Apache Mina FTP server

Mar 10, 2009:

5:54 PM Ticket #182 (Illumina probes not found message should be documented) created by jari
Extract information from below conversation and add it to the Illumina …
2:45 PM Ticket #181 (Add MeV+R as a BASE extension?) created by jari
It may be interesting to use MeV+R for visualizing and running R …
2:15 PM Ticket #180 (Overview plot extensions for Illumina expression) created by jari
When support for overview plot extension are available in BASE, …

Mar 3, 2009:

1:37 PM net.sf.basedb.illumina edited by jari
Added links to Illumina docs. (diff)
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