Timeline
Mar 16, 2009:
Mar 14, 2009:
- 3:07 PM Ticket #183 (Change result storage of qQuantilNormalizer when BASE bioassay set ...) updated by
-
Owner changed
- 3:07 PM Ticket #187 (qQuantileNormalizer should allow user to select the normaliztion ...) updated by
-
Owner changed
- 3:06 PM Ticket #187 (qQuantileNormalizer should allow user to select the normaliztion ...) created by
- There are several ways to normalize the data. The user should select a …
- 3:03 PM Ticket #186 (qQuantileNormalizer method storeResult must be reimplemented) updated by
-
Status changed
- 3:03 PM Ticket #186 (qQuantileNormalizer method storeResult must be reimplemented) created by
- Many things done in this method should move into the abstract base class.
- 3:02 PM Ticket #185 (External binary plugins should be interruptable from BASE.) created by
- 3:00 PM Ticket #184 (qQuantileNormalizer should update progress bar) updated by
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Status, Owner changed
- 3:00 PM Ticket #184 (qQuantileNormalizer should update progress bar) created by
- 2:58 PM Changeset [993] by
- Addresses #118. First version of working qQuantileNormalizer.
- 2:58 PM Ticket #118 (Create qQuantile normalizer (aka cubic-spline normalizer)) updated by
- (In [993]) Addresses #118. First version of working qQuantileNormalizer.
- 2:52 PM net.sf.basedb.pluginutilties edited by
- (diff)
- 2:46 PM net.sf.basedb.pluginutilties edited by
- (diff)
- 2:43 PM Changeset [992] by
- Require BASE 2.5. Restructure build script.
- 1:50 PM Changeset [991] by
- Minor things.
- 1:50 PM Changeset [990] by
- Typo.
- 1:15 PM Ticket #183 (Change result storage of qQuantilNormalizer when BASE bioassay set ...) created by
- Relates to http://base.thep.lu.se/ticket/742 and …
- 11:55 AM Changeset [989] by
- Missing values from BASE are empty fields, need to define field …
Mar 13, 2009:
- 6:31 PM se.lu.onk.IlluminaSNPNormalization edited by
- (diff)
- 6:16 PM se.lu.onk.BAFsegmentation edited by
- (diff)
- 6:15 PM se.lu.onk.BAFsegmentation edited by
- (diff)
Mar 11, 2009:
- 11:02 AM Changeset [988] by
- Changes for future release 1.1
- 11:01 AM Milestone FTP Server v1.0 completed
- Implement an FTP Server as an extension to the web client. For more …
- 11:00 AM Ticket #114 (Implement FTP Server) updated
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Milestone changed
Milestone FTP Server v1.0beta deleted - 10:57 AM PluginDownload edited by
- (diff)
- 10:53 AM net.sf.basedb.ftp edited by
- Releasing FTP Server 1.0 (diff)
- 10:42 AM Changeset [987] by
- Tagging release 1.0
- 10:41 AM Changeset [986] by
- Preparing release 1.0
- 10:01 AM Changeset [985] by
- Fixes #127: Update to final release of Apache Mina FTP server
- 10:01 AM Ticket #127 (Update to final release of Apache Mina FTP server) closed by
- fixed: (In [985]) Fixes #127: Update to final release of Apache Mina FTP server
- 9:09 AM Ticket #181 (Add MeV+R as a BASE extension?) updated by
- MeV+R seems to be a modified version of MeV. There are clearly …
Mar 10, 2009:
- 5:54 PM Ticket #182 (Illumina probes not found message should be documented) created by
- Extract information from below conversation and add it to the Illumina …
- 2:46 PM Ticket #181 (Add MeV+R as a BASE extension?) updated by
-
Description changed
Added line breaks to the abstract. - 2:45 PM Ticket #181 (Add MeV+R as a BASE extension?) created by
- It may be interesting to use MeV+R for visualizing and running R …
- 2:15 PM Ticket #180 (Overview plot extensions for Illumina expression) created by
- When support for overview plot extension are available in BASE, …
Mar 7, 2009:
- 11:04 AM Ticket #86 (BasicReporter and BasicSpot (se.lu.onk.BaseFile)) updated by
-
Component changed
- 11:04 AM Ticket #85 (Pinbased normalization for VirtualArray data) updated by
-
Component changed
- 11:04 AM Ticket #81 (Merge on genesymbol) updated by
-
Component changed
- 11:03 AM Ticket #79 (Center on assay (se.lu.onk.Center)) updated by
-
Component changed
- 11:03 AM Ticket #78 (Spike Lowess (se.lu.onk.lowess)) updated by
-
Component changed
Mar 3, 2009:
- 1:37 PM net.sf.basedb.illumina edited by
- Added links to Illumina docs. (diff)
Feb 27, 2009:
- 2:07 PM Changeset [984] by
- Added support to write to stdin of underlying binary ... added missing …
- 2:06 PM Changeset [983] by
- Added support to write to stdin of underlying binary.
- 12:33 PM Changeset [982] by
- References #178: The MeV launcher should use attached file instead of …
- 12:33 PM Ticket #178 (The MeV launcher should use attached file instead of running ...) updated by
- (In [982]) References #178: The MeV launcher should use attached file …
- 11:16 AM Changeset [981] by
- Changed requirements to version 2.9 of BASE both in documentation and …
- 11:12 AM Changeset [980] by
- Added license file from MeV.
- 10:30 AM Changeset [979] by
- 2.9 BASE core API required since changeset:975
- 10:03 AM net.sf.basedb.mev edited by
- (diff)
- 9:45 AM Changeset [978] by
- Fixes #179: Add user-configurable option for JVM max memory
- 9:45 AM Ticket #179 (Add user-configurable option for JVM max memory) closed by
- fixed: (In [978]) Fixes #179: Add user-configurable option for JVM max memory
- 8:49 AM Ticket #179 (Add user-configurable option for JVM max memory) updated by
-
Status changed
Feb 26, 2009:
- 7:22 PM Ticket #179 (Add user-configurable option for JVM max memory) created by
- Currently, this is hard-coded into the generated JNLP file to 512 MB. …
- 2:45 PM Ticket #178 (The MeV launcher should use attached file instead of running ...) updated by
-
Description changed
- 2:05 PM Changeset [977] by
- References #119 Corrected the calculation of relative rank between …
- 2:05 PM Ticket #119 (Create rank invariant normalizer) updated by
- (In [977]) References #119 Corrected the calculation of relative rank …
- 1:41 PM Ticket #162 (Upgrade to MeV 4.3) updated by
- (In [976]) References #162: Upgrade to MeV 4. This seems to work now. …
- 1:41 PM Changeset [976] by
- References #162: Upgrade to MeV 4. This seems to work now. I'll keep …
- 12:13 PM Changeset [975] by
- References #119 Some changes in the calculation-part. The plug-in runs …
- 12:13 PM Ticket #119 (Create rank invariant normalizer) updated by
- (In [975]) References #119 Some changes in the calculation-part. The …
- 10:48 AM Ticket #162 (Upgrade to MeV 4.3) updated by
-
Status changed
- 10:48 AM Changeset [974] by
- Fixes #178: The MeV launcher should use attached file instead of …
- 10:48 AM Ticket #178 (The MeV launcher should use attached file instead of running ...) closed by
- fixed: (In [974]) Fixes #178: The MeV launcher should use attached file …
Feb 25, 2009:
- 4:16 PM Changeset [973] by
- Addresses #118. Required yat version is 0.5 or later
- 4:16 PM Ticket #118 (Create qQuantile normalizer (aka cubic-spline normalizer)) updated by
- (In [973]) Addresses #118. Required yat version is 0.5 or later
- 3:59 PM Changeset [972] by
- Addresses #118. Load of java wrapper works but manual install of …
- 3:59 PM Ticket #118 (Create qQuantile normalizer (aka cubic-spline normalizer)) updated by
- (In [972]) Addresses #118. Load of java wrapper works but manual …
- 1:45 PM Ticket #178 (The MeV launcher should use attached file instead of running ...) updated by
-
Status changed
- 1:45 PM Ticket #178 (The MeV launcher should use attached file instead of running ...) created by
- This is primarily a performance requirement. It can take a lot of time …
- 1:42 PM Ticket #162 (Upgrade to MeV 4.3) updated by
-
Milestone changed
- 1:42 PM Ticket #116 (Make the MEV launcher extension aware of bioassaysets that store data ...) updated by
-
Milestone changed
- 1:21 PM Changeset [971] by
- Added library-files to the ignore-list
- 9:43 AM Changeset [970] by
- Preparing for future release Illumina package v1.4
- 9:40 AM Milestone Illumina package v1.3 completed
- See Illumina plug-ins package for BASE …
- 9:39 AM Ticket #173 (Remove the float to integer conversions in beadstudio2ibs.pl when ...) closed by
- fixed: Wiki page is now updated.
- 9:36 AM net.sf.basedb.illumina edited by
- Releasing Illumina package 1.3 (diff)
- 9:12 AM Changeset [969] by
- Tagging release 1.3
- 9:07 AM Changeset [968] by
- Preparing release 1.3
Feb 23, 2009:
- 3:16 PM Changeset [967] by
- References #119 The plug-in is mostly ready for testing
- 3:16 PM Ticket #119 (Create rank invariant normalizer) updated by
- (In [967]) References #119 The plug-in is mostly ready for testing
Feb 18, 2009:
- 3:13 PM Ticket #119 (Create rank invariant normalizer) updated by
- (In [966]) References #119 Part of the normalization algorithm is …
- 3:13 PM Changeset [966] by
- References #119 Part of the normalization algorithm is implemented
- 8:55 AM Changeset [965] by
- Corrected flags summary output
Feb 17, 2009:
Feb 16, 2009:
- 10:21 PM Changeset [964] by
- Added support to add qQN source to the normalizer package.
- 9:33 PM Changeset [963] by
- Improved configure.ac and added option to disable check on required libs.
- 9:19 PM Changeset [962] by
- Added missing include statement.
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