Timeline



May 28, 2008:

8:19 PM Ticket #114 (Implement FTP Server) created by Nicklas Nordborg
Moved from http://base.thep.lu.se/ticket/408
8:18 PM net.sf.basedb.ftp created by Nicklas Nordborg
Adding FTPServer info page

May 27, 2008:

3:19 PM Changeset [707] by Jari Häkkinen
Getting Smooth to compile.
3:18 PM Changeset [706] by Jari Häkkinen
Adding notes on how to create a package.
2:19 PM Changeset [705] by Jari Häkkinen
Fixing svn property.
2:17 PM se.lu.onk.MergeBioAssay edited by Jari Häkkinen
Adding new package. (diff)
2:17 PM mergebioassay_704.zip attached to se.lu.onk.MergeBioAssay by Jari Häkkinen
2:16 PM se.lu.onk.MergeBioAssay edited by Jari Häkkinen
Adding new package. (diff)
2:10 PM Changeset [704] by Jari Häkkinen
Fixing svn property.
10:29 AM se.lu.onk.Smooth edited by Jari Häkkinen
Fixed broken link. (diff)

May 26, 2008:

2:39 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
2:39 PM se.lu.onk.IlluminaSNPNormalization created by markus

May 23, 2008:

5:02 PM Ticket #112 (Illumina plug-in installer script fails (in some cases)) updated by Jari Häkkinen
Summary changed
4:51 PM Ticket #111 (Update Illumina wiki pages and related documentation before release) closed by Jari Häkkinen
fixed
4:51 PM net.sf.basedb.illumina edited by Jari Häkkinen
Added two new plugins to the list of Illumina plugins. (diff)
4:47 PM Changeset [703] by Jari Häkkinen
Preparing for future 1.2 release
4:45 PM Milestone Illumina package v1.1 completed
4:44 PM net.sf.basedb.illumina edited by Jari Häkkinen
Releasing Illumina package 1.1 (diff)
4:39 PM illumina-plugins-1.1.tar.gz attached to net.sf.basedb.illumina by Jari Häkkinen
4:38 PM Changeset [702] by Jari Häkkinen
Tagging release 1.1
4:37 PM Changeset [701] by Jari Häkkinen
Preparing release of Illumina plug-in package 1.1
4:33 PM Ticket #111 (Update Illumina wiki pages and related documentation before release) updated by Jari Häkkinen
Status, Owner changed
4:31 PM Changeset [700] by Jari Häkkinen
Improved description.
4:29 PM Ticket #113 (Add support for more variations of Illumina detection P-value calculations) updated by Jari Häkkinen
Milestone changed
4:28 PM Ticket #109 (Add information to the wiki page on how to give feedback on the ...) closed by Jari Häkkinen
fixed
4:28 PM net.sf.basedb.illumina edited by Jari Häkkinen
Added feedback information to Illumina (diff)
1:54 PM Changeset [699] by Jari Häkkinen
Added two new plugins to the list of plugins. Alphabetized list.

May 22, 2008:

12:07 AM Ticket #95 (Intensity calculator for Illumina expression data) closed by Jari Häkkinen
fixed: Change sets 669, 679, and …

May 21, 2008:

11:59 PM Ticket #113 (Add support for more variations of Illumina detection P-value calculations) created by Jari Häkkinen
The methods used by BeadStudio is described in the BeadStudio Gene …
11:57 PM Changeset [698] by Jari Häkkinen
Fixes #110.
11:57 PM Ticket #110 (Illumina detection P-value plug-in) closed by Jari Häkkinen
fixed: (In [698]) Fixes #110.

May 13, 2008:

11:42 AM PluginDownload edited by Nicklas Nordborg
Added section for extensions (diff)
11:33 AM PluginDownload edited by Nicklas Nordborg
Added link to example extensions (diff)
9:16 AM net.sf.basedb.mev edited by Nicklas Nordborg
Releasing MEV Launcher v1.0 (diff)
9:13 AM mev-launcher-1.0.tar.gz attached to net.sf.basedb.mev by Nicklas Nordborg
MEV Launcher 1.0
9:08 AM Changeset [697] by Nicklas Nordborg
Preparing for future release 1.1
9:07 AM Milestone MEV Launcher v1.0 completed
The first release of the MEV Launcher as a separate extension to BASE. …
8:58 AM Changeset [696] by Nicklas Nordborg
Tagging release 1.0
8:58 AM Changeset [695] by Nicklas Nordborg
Preparing release 1.0
8:51 AM Changeset [694] by Nicklas Nordborg
Preparing for future release 1.1
8:50 AM Milestone Extension examples v1.0 completed
Examples of extensions for the BASE web client. For more information …
8:48 AM net.sf.basedb.examplecode edited by Nicklas Nordborg
Releasing example extensions v1.0 (diff)
8:43 AM extension-examples-1.0.tar.gz attached to net.sf.basedb.examplecode by Nicklas Nordborg
Example extensions v1.0
8:41 AM Changeset [693] by Nicklas Nordborg
Tagging release 1.0
8:40 AM Changeset [692] by Nicklas Nordborg
Preparing release 1.0

May 12, 2008:

1:54 PM Changeset [691] by Nicklas Nordborg
Fixes #103: Create example extensions
1:54 PM Ticket #103 (Create example extensions) closed by Nicklas Nordborg
fixed: (In [691]) Fixes #103: Create example extensions
1:32 PM Ticket #108 (Update information about MEV on the BASE-hacks site) closed by Nicklas Nordborg
fixed
12:57 PM Ticket #108 (Update information about MEV on the BASE-hacks site) updated by Nicklas Nordborg
Status changed
12:48 PM Ticket #107 (Move the MEV specific code from BASE) closed by Nicklas Nordborg
fixed: (In [690]) Fixes #107: Move the MEV specific code from BASE
12:48 PM Changeset [690] by Nicklas Nordborg
Fixes #107: Move the MEV specific code from BASE

May 5, 2008:

4:16 PM Ticket #110 (Illumina detection P-value plug-in) updated by Jari Häkkinen
(In [689]) Addresses #110. Added MAD based outlier removal of negative …
4:16 PM Changeset [689] by Jari Häkkinen
Addresses #110. Added MAD based outlier removal of negative control …
4:06 PM Changeset [688] by Jari Häkkinen
Typo
9:08 AM Ticket #112 (Illumina plug-in installer script fails (in some cases)) updated by Jari Häkkinen
Component changed

May 1, 2008:

8:21 AM Changeset [687] by Jari Häkkinen
Recovering svndigest config file.

Apr 30, 2008:

3:04 PM Ticket #112 (Illumina plug-in installer script fails (in some cases)) updated by Jari Häkkinen
I should maybe mention that on my 2.7.0pre I have no problems but on a …
3:02 PM Ticket #112 (Illumina plug-in installer script fails (in some cases)) created by Jari Häkkinen
The plug-in installer fails when I try to rerun it with the below …
2:49 PM Ticket #110 (Illumina detection P-value plug-in) updated by Jari Häkkinen
(In [686]) Addresses #110.
2:48 PM Changeset [686] by Jari Häkkinen
Addresses #110.
2:17 PM Changeset [685] by Jari Häkkinen
Improved text.
2:17 PM Changeset [684] by Jari Häkkinen
Fixes #104. Docs already fixed, added build check.
2:17 PM Ticket #104 (Add information that BASE2WSClient.jar is needed to compile the plug-ins) closed by Jari Häkkinen
fixed: (In [684]) Fixes #104. Docs already fixed, added build check.
10:09 AM Changeset [683] by Nicklas Nordborg
References #103. Updated README with latest information.
10:09 AM Ticket #103 (Create example extensions) updated by Nicklas Nordborg
(In [683]) References #103. Updated README with latest information.
9:56 AM Changeset [682] by Nicklas Nordborg
References #103. Moved all examples into a submenu.
9:56 AM Ticket #103 (Create example extensions) updated by Nicklas Nordborg
(In [682]) References #103. Moved all examples into a submenu.

Apr 29, 2008:

3:19 PM Changeset [681] by Jari Häkkinen
Addresses #110. Single sample Whole Genome BeadChips detection P-value …
3:19 PM Ticket #110 (Illumina detection P-value plug-in) updated by Jari Häkkinen
(In [681]) Addresses #110. Single sample Whole Genome BeadChips
2:28 PM Ticket #111 (Update Illumina wiki pages and related documentation before release) created by Jari Häkkinen
2:26 PM Ticket #95 (Intensity calculator for Illumina expression data) updated by Jari Häkkinen
Milestone changed
2:26 PM Ticket #110 (Illumina detection P-value plug-in) updated by Jari Häkkinen
Status, Owner changed
2:26 PM Ticket #110 (Illumina detection P-value plug-in) created by Jari Häkkinen
Add a plug-in to calculate detection P-values for bead-sets. The …
2:22 PM Changeset [680] by Jari Häkkinen
Bumped version number to pre1.1

Apr 28, 2008:

8:09 PM Changeset [679] by Jari Häkkinen
Moving flush call to a more appropriate place.
4:23 PM Changeset [678] by Jari Häkkinen
No configurations for BeadSummaryImporter
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