Opened 3 months ago

Closed 3 months ago

#985 closed task (fixed)

Re-design the gene report generator so that it can produce the report using data from the cufflinks file

Reported by: nicklas Owned by: nicklas
Priority: critical Milestone: Reggie v4.11
Component: net.sf.basedb.reggie Keywords:
Cc:

Description (last modified by nicklas)

This is part of #982.

The pilot and gene report plug-in currently assumes that the data that is needed for the reports can be found in the database. This function need to be updated to take the data from the isoforms.fpkm_tracking file instead.

Change History (4)

comment:1 Changed 3 months ago by nicklas

  • Summary changed from Re-design the pilot report generator so that it can produce the report using data from the cufflinks file to Re-design the gene report generator so that it can produce the report using data from the cufflinks file

Turned out that the pilot report is already using only the cufflinks file. The gene report is using data from the database so it is only this that needs to be updated.

comment:2 Changed 3 months ago by nicklas

  • Description modified (diff)

comment:3 Changed 3 months ago by nicklas

  • Status changed from new to assigned

comment:4 Changed 3 months ago by nicklas

  • Resolution set to fixed
  • Status changed from assigned to closed

(In [4538]) Fixes #985: Re-design the gene report generator so that it can produce the report using data from the cufflinks file

FPKM values are now automatically read from the Cufflinks file instead of from the database if there is no data in the database.

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