Opened 7 years ago
Closed 7 years ago
#985 closed task (fixed)
Re-design the gene report generator so that it can produce the report using data from the cufflinks file
| Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
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| Priority: | critical | Milestone: | Reggie v4.11 |
| Component: | net.sf.basedb.reggie | Keywords: | |
| Cc: |
Description (last modified by )
This is part of #982.
The pilot and gene report plug-in currently assumes that the data that is needed for the reports can be found in the database. This function need to be updated to take the data from the isoforms.fpkm_tracking file instead.
Change History (4)
comment:1 by , 7 years ago
| Summary: | Re-design the pilot report generator so that it can produce the report using data from the cufflinks file → Re-design the gene report generator so that it can produce the report using data from the cufflinks file |
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comment:2 by , 7 years ago
| Description: | modified (diff) |
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comment:3 by , 7 years ago
| Status: | new → assigned |
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comment:4 by , 7 years ago
| Resolution: | → fixed |
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| Status: | assigned → closed |
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Turned out that the pilot report is already using only the cufflinks file. The gene report is using data from the database so it is only this that needs to be updated.