Opened 2 years ago

Closed 2 years ago

#984 closed task (fixed)

Remove the raw data import step for Cufflinks data

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: critical Milestone: Reggie v4.11
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

This is part of #982.

The import is currently triggered automatically after Cufflinks has been completed.

Change History (5)

comment:1 Changed 2 years ago by Nicklas Nordborg

Status: newassigned

comment:2 Changed 2 years ago by Nicklas Nordborg

(In [4539]) References #984: Remove the raw data import step for Cufflinks data

The import step has been removed. The job will end up in the "Confirm feature extraction" wizard (no matter if the auto-confirm options is selected or not). No actions are automatically selected since the confirm wizard assume that raw data has been imported.

comment:3 Changed 2 years ago by Nicklas Nordborg

(In [4540]) References #984: Remove the raw data import step for Cufflinks data

The "Confirm feature extraction" wizard has been re-designed to check if there is a FPKM file instead of raw data count.

comment:4 Changed 2 years ago by Nicklas Nordborg

(In [4541]) References #984: Remove the raw data import step for Cufflinks data

The auto-confirm service is now accepting Cufflinks jobs without imported raw data. It will trigger the report generation step if a FPKM file is found.

comment:5 Changed 2 years ago by Nicklas Nordborg

Resolution: fixed
Status: assignedclosed
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