Opened 5 weeks ago

Closed 4 weeks ago

#984 closed task (fixed)

Remove the raw data import step for Cufflinks data

Reported by: nicklas Owned by: nicklas
Priority: critical Milestone: Reggie v4.11
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

This is part of #982.

The import is currently triggered automatically after Cufflinks has been completed.

Change History (5)

comment:1 Changed 5 weeks ago by nicklas

  • Status changed from new to assigned

comment:2 Changed 5 weeks ago by nicklas

(In [4539]) References #984: Remove the raw data import step for Cufflinks data

The import step has been removed. The job will end up in the "Confirm feature extraction" wizard (no matter if the auto-confirm options is selected or not). No actions are automatically selected since the confirm wizard assume that raw data has been imported.

comment:3 Changed 5 weeks ago by nicklas

(In [4540]) References #984: Remove the raw data import step for Cufflinks data

The "Confirm feature extraction" wizard has been re-designed to check if there is a FPKM file instead of raw data count.

comment:4 Changed 4 weeks ago by nicklas

(In [4541]) References #984: Remove the raw data import step for Cufflinks data

The auto-confirm service is now accepting Cufflinks jobs without imported raw data. It will trigger the report generation step if a FPKM file is found.

comment:5 Changed 4 weeks ago by nicklas

  • Resolution set to fixed
  • Status changed from assigned to closed
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