Opened 7 years ago
Closed 7 years ago
#979 closed task (fixed)
Define and import Pilot report annotations
| Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
|---|---|---|---|
| Priority: | major | Milestone: | Reggie v4.11 |
| Component: | net.sf.basedb.reggie | Keywords: | |
| Cc: |
Description
Scores and other values that are calculated as part of generating the pilot report should be added as annotations on the raw bioassay items. The following values:
- Enumerated values:
- Molekylär subtyp: HER2 enriched, Luminal B, Luminal A, Basal, Normal-like
- GGI-värde: Hög, Låg
- Östrogenreceptor: Negativ, Positiv
- Progesteronreceptor: Negativ, Positiv
- HER2-receptor: Negativ, Positiv
- KI67: Hög, Låg
- Scores:
- LumA
- LumB
- HER2
- Basal
- Normal
Change History (4)
comment:1 by , 7 years ago
| Status: | new → assigned |
|---|
comment:2 by , 7 years ago
comment:3 by , 7 years ago
(In [4537]) References #979: Define and import Pilot report annotations
The pilot report should now have the possibility to save/update the annotations. This is controlled by a flag that is off by default when running the plug-in manually and on when running via the wizard interface or auto-confirm process.
comment:4 by , 7 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
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(In [4536]) References #979: Define and import Pilot report annotations
Added 11 new annotation types to RAWBIOASSAY items. Used 'PILOT_' as a prefix. Enumeration values are prepared for being translated to english (for example, Hög -> High).