Opened 5 months ago

Closed 5 months ago

#979 closed task (fixed)

Define and import Pilot report annotations

Reported by: nicklas Owned by: nicklas
Priority: major Milestone: Reggie v4.11
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

Scores and other values that are calculated as part of generating the pilot report should be added as annotations on the raw bioassay items. The following values:

  • Enumerated values:
    • Molekylär subtyp: HER2 enriched, Luminal B, Luminal A, Basal, Normal-like
    • GGI-värde: Hög, Låg
    • Östrogenreceptor: Negativ, Positiv
    • Progesteronreceptor: Negativ, Positiv
    • HER2-receptor: Negativ, Positiv
    • KI67: Hög, Låg
  • Scores:
    • LumA
    • LumB
    • HER2
    • Basal
    • Normal

Change History (4)

comment:1 Changed 5 months ago by nicklas

  • Status changed from new to assigned

comment:2 Changed 5 months ago by nicklas

(In [4536]) References #979: Define and import Pilot report annotations

Added 11 new annotation types to RAWBIOASSAY items. Used 'PILOT_' as a prefix. Enumeration values are prepared for being translated to english (for example, Hög -> High).

comment:3 Changed 5 months ago by nicklas

(In [4537]) References #979: Define and import Pilot report annotations

The pilot report should now have the possibility to save/update the annotations. This is controlled by a flag that is off by default when running the plug-in manually and on when running via the wizard interface or auto-confirm process.

comment:4 Changed 5 months ago by nicklas

  • Resolution set to fixed
  • Status changed from assigned to closed
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