Opened 8 months ago

Closed 8 months ago

#953 closed enhancement (fixed)

Remove "unmapped.bam" file from Tophat results

Reported by: nicklas Owned by: nicklas
Priority: major Milestone: Reggie v4.9.3
Component: net.sf.basedb.reggie Keywords:


This file is not used anymore and just takes up space on the disk. This means that we also no longer need the script that is doing something to "to make them compatible with downstream tools (e.g., Picard, samtools or GATK)".

Change History (1)

comment:1 Changed 8 months ago by nicklas

  • Resolution set to fixed
  • Status changed from new to closed

(In [4419]) Fixes #953: Remove "unmapped.bam" file from Tophat results

Remove the part of the script that calls "". The "unmapped.bam" file is not removed until just before copying the result files back to the project archive since the "" script also extract some information from the unmapped.bam file.

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