Changes between Initial Version and Version 5 of Ticket #939


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Timestamp:
Feb 14, 2017, 1:14:33 PM (7 years ago)
Author:
Nicklas Nordborg
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  • Ticket #939

    • Property Owner set to Nicklas Nordborg
    • Property Status new → assigned

  • Ticket #939 – Description

    initial v5  
    11The installation wizard should be similar to the Reggie installation wizard. It must check and create items that are needed for the Relax server to work as intended.
    22
    3 Exactly what is needed has not yet been defined.
     3Item subtypes:
     4
     5 * Patient (biosource)
     6 * Case (Sample)
     7 * Specimen (Sample)
     8 * RNA (Extract)
     9 * Library (Extract)
     10 * !MergedSequences (Derived bioassay)
     11
     12From the derived bioassay we go directly to raw bioassay with a relevant raw data type (most likely a file-only data type since we want to avoid importing data to the database).
     13
     14Raw data types:
     15 * Cufflinks (if we need to support older releases)
     16 * Kallisto (for the new pipeline)
     17 * ... and other raw data type in the future
     18
     19On each level we also need to define annotation types.