Changes between Version 5 and Version 6 of Ticket #887


Ignore:
Timestamp:
May 12, 2016, 8:04:17 AM (8 years ago)
Author:
Nicklas Nordborg
Comment:

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  • Ticket #887 – Description

    v5 v6  
    5454   * `PM_READS..A.`
    5555  - `cohortMerged.txt`: Data from the `MergedSequences` parent item. Columns:
    56    * TODO
     56   * `ID`: Internal ID in BASE
     57   * `Name`: Name of item
     58   * `Type`: Type of item (!MergedSequences)
     59   * `Physical.bioassays`: Name of the physical bioassay (flow cell) used for sequencing. Comma-separated list if there is more than one.
     60   * `Software`: Name of the software used for merging
     61   * `Registered`: Date the item was registered in BASE
     62   * `AnalysisResult..A.
     63   * `DataFilesFolder..A.`
     64   * `READS..A.`
     65   * `PF_READS..A.`
     66   * `ADAPTER_READS..A.`
     67   * `PT_READS..A.`
     68   * `FragmentSizeAvg..A.`
     69   * `FragmentSizeStdev..A.`
    5770  - `cohortSequencing.txt`: Data from the `SequencingRun` parent item. Columns:
    5871   * TODO
    5972  - `cohortLibrary.txt`: Data from the `Library` parent item. Columns:
    60    * TODO
     73   * `ID`: Internal ID in BASE
     74   * `Name`: Name of item
     75   * `Type`: Type of item (Library)
     76   * `Protocol`: Name of the library preparation protocol
     77   * `Created`: Date the library was created
     78   * `Tag`: Name of the barcode used by the library
     79   * `Bioplate`: Name of the library plate
     80   * `Biowell.row`: Row coordinate on the library plate (A-H)
     81   * `Biowell.column`: Column coordinate on the library plate (1-12)
     82   * `QubitConc..A.`
    6183  - `cohortRNA.txt`: Data from the `RNA` parent item. Columns:
    6284   * TODO