Opened 4 years ago

Closed 4 years ago

#876 closed enhancement (fixed)

NeoPrep library registration without Caliper files

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Reggie v4.3
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

The sizes of fragments seems to be stable. It is not necessary to run Caliper. The average size should instead be set in an input field (default 300). This similar to how it was done before #835 was implemented but we still need to provide a Qubit file with concentration measurements.

Change History (4)

comment:1 Changed 4 years ago by Nicklas Nordborg

Status: newassigned

comment:2 Changed 4 years ago by Nicklas Nordborg

(In [3834]) References #876: NeoPrep? library registration without Caliper files

The GUI has been updated with support for this feature. When "Success" is selected there is an option to specify if the Caliper has been used or not. The default depends on if the plate is a manual or NeoPrep plate, but it is possible to use the wizard both with and without Caliper files in all cases.

If Caliper files are not used the library size must be set. The default value is 300.

Pre-validation of the Qubit file has been implemented to work without any Caliper files. The final registration doesn't work yet.

comment:3 Changed 4 years ago by Nicklas Nordborg

(In [3835]) References #876: NeoPrep? library registration without Caliper files

Moved some common functionality from the Caliper and Qubit plate importers to a common base class. This makes it possible to use most of the current code in the registration wizard and only sections that are specifically related Caliper or Qubit-only need special handling.

The registration should now work.

The old NeoPrep registration wizard that assumed normalized output from the NeoPrep has been removed.

comment:4 Changed 4 years ago by Nicklas Nordborg

Resolution: fixed
Status: assignedclosed
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