Opened 9 years ago

Closed 9 years ago

#746 closed enhancement (fixed)

IHC-quality annotation

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Reggie v3.2
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

#736 added support for annotating slides with an IHC annotation.

For specimens on stained slides that are flagged as IHC a quality annotation is needed. The annotation can be of enumeration type with available values: good or fail or missing value NULL. The annotation can be used for all IHC irrespective of IHC-stain, e.g., p63 or any future stain.

In the histology scoring wizard the IHC-quality value could be set for samples byt clicking the stained specimen on the IHC slide (perhaps clicking the microscope icon). Selection through drop-down or perhaps just toggle between good or fail or NULL (default).

Change History (2)

comment:1 by Nicklas Nordborg, 9 years ago

Status: new → assigned

comment:2 by Nicklas Nordborg, 9 years ago

Resolution: → fixed
Status: assigned → closed

(In [3169]) Fixes #746: IHC-quality annotation

Added IHCQuality annotation type that can be used on stained samples. Valid values are "Good" and "Fail".

The histology scoring wizard has been updated to display the value of this annotation for glass slides with IHC annotation present. The glass slides are now clickable and the IHCQuality (and comment) can be set in the form below the list of slides.

The ScoreComplete annotation is re-used and set to true (on the IHC slide) when all samples on the IHC slide has got a value for the IHCQuality annotation.

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