Opened 6 years ago

Closed 6 years ago

#743 closed defect (fixed)

The second trimmomatic step in demux script may not include options

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: trivial Milestone: Reggie v3.2
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

When generating the script for the second trimmomatic step the options specified may not be included since there is an incorrect check:

if (demux_trimmomaticOptions1 != null)
{
   trimCmd2 += " " + demux_trimmomaticOptions2;
}

The if statement should check demux_trimmomaticOptions2. Fortunately both options are required and should never be null at this stage.

Change History (1)

comment:1 Changed 6 years ago by Nicklas Nordborg

Resolution: fixed
Status: newclosed

(In [3141]) Fixes #743: The second trimmomatic step in demux script may not include options

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