Opened 7 years ago

Closed 7 years ago

#545 closed task (fixed)

Register sequencing as ended

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Reggie v2.15
Component: net.sf.basedb.reggie Keywords:
Cc:

Description (last modified by Nicklas Nordborg)

Part of #533.

This wizard should be the last wizard in the "Library preparation wizards" section. It can be used by users with the LibraryPrep role.

The purpose of the wizard is to register the end of a sequencing run. The wizard should show SequencingRun items that has a SequencingStart date annotation but no SequencingEnd annotation.

At this step we should register the following information on the SequencingRun item:

  • SequencingTurnAround: DateTime annotation
  • SequencingEnd: DateTime annotation
  • Comments: Description column
  • Comments per flow cell??

No decisions about how successful or not the sequencing was is made at this step.

Change History (11)

comment:1 Changed 7 years ago by Nicklas Nordborg

Description: modified (diff)

comment:2 Changed 7 years ago by Nicklas Nordborg

Description: modified (diff)

comment:3 Changed 7 years ago by Nicklas Nordborg

(In [2197]) References #545: Register sequencing as ended

The wizard should now be usable.

comment:4 Changed 7 years ago by Nicklas Nordborg

(In [2198]) References #545: Register sequencing as ended

Added some information about the flow cells on the selected sequencing run to make it easier to select the correct one.

comment:5 Changed 7 years ago by Nicklas Nordborg

(In [2225]) References #545: Register sequencing as ended

New version of the 'sequencing ended' wizard. Added an option to specify if first base report failed. If so, the 'sequencing startup' wizard is enabled again for the flow cell. Other changes are mostly related to that there is only a single parent FlowCell? for each SequencingRun?.

(Incorrectly referenced #533 in commit message)

comment:6 Changed 7 years ago by Nicklas Nordborg

Status: newassigned

comment:7 Changed 7 years ago by Nicklas Nordborg

(In [2230]) References #545: Register sequencing as ended

Display sequencing start date in the selection list and comments to make it easier to select the correct sequencing run.

comment:8 Changed 7 years ago by Nicklas Nordborg

(In [2233]) References #545: Register sequencing as ended

Avoid using 'failed' for the 'First base report' field since it may still be possible to sequence the flow cell.

comment:9 Changed 7 years ago by Nicklas Nordborg

(In [2236]) References #545 and #546. Load and display information about pools and library plate to make it easier to relate a sequencing run to the correct lab protocols.

comment:10 Changed 7 years ago by Nicklas Nordborg

(In [2241]) References #562, #545 and #546. Only display pool name once if the flow cell only contains one pool.

comment:11 Changed 7 years ago by Nicklas Nordborg

Resolution: fixed
Status: assignedclosed
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