Changes between Version 6 and Version 28 of Ticket #533


Ignore:
Timestamp:
Apr 23, 2014, 3:39:37 PM (10 years ago)
Author:
Nicklas Nordborg
Comment:

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  • Ticket #533

    • Property Milestone Reggie v2.15 → Reggie v2.16
    • Property Status new → assigned

  • Ticket #533 – Description

    v6 v28  
    1313 4. (#548) Register demux and merge as ended. At the end we have one "!MergedSequences" item for each "Library" from the flow cells that was sequenced. A count of the number of reads for each library must be recorded and is used to determine if the library needs to be re-sequenced or not. FASTQ files for each library are stored on the server.
    1414
    15  5. Start filtering and alignment. Bowtie and !TopHat is used to first filter and then align against a pre-defined set of transcripts.
     15 5. (#593) Start filtering and alignment. Bowtie and !TopHat is used to first filter and then align against a pre-defined set of transcripts.
    1616
    1717 6. Register filtering and alignment as ended. At the end we have one "!AlignedSequences" item for each "Library" from the flow cells that was sequenced. BAM files for each library are stored on the server.