Opened 11 years ago

Last modified 11 years ago

#422 closed task

Implement wizards for RNA->cDNA processing — at Version 7

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: critical Milestone: Reggie v2.12
Component: net.sf.basedb.reggie Keywords:
Cc:

Description (last modified by Nicklas Nordborg)

This ticket is the master ticket for the multiple wizards that are needed to process RNA into cDNA which is about half-way in the library preparation process. We have identified about five sub-steps/wizards that are needed (subtickets will be created later):

  1. (#424) Select RNA items and place on a plate. Sub-items and sub-plates are created without creation date to indicate that the laboratory process has not yet been completed.
  2. (#425) Generate a lab protocol with necessary information such as storage location, etc.
  3. Generate files that are needed by laboratory instruments so that users don't have to type or copy information manually.
  4. (#436) Import quality control measurements.
  5. Register the cDNA process as completed, including information about dates, operators, protocols, etc.

Change History (8)

comment:1 by Nicklas Nordborg, 11 years ago

Milestone: Reggie v2.9Reggie v2.x

comment:2 by Nicklas Nordborg, 11 years ago

Description: modified (diff)

comment:3 by Nicklas Nordborg, 11 years ago

Description: modified (diff)

by Nicklas Nordborg, 11 years ago

Attachment: cdna-wizards-1.txt added

Overview of items and information to be registered

comment:4 by Nicklas Nordborg, 11 years ago

Status: newassigned

comment:5 by Nicklas Nordborg, 11 years ago

(In [1734]) References #422: Implement wizards for RNA->cDNA processing

Added subtypes and bioplate types to the installation servlet. Added some more RNA items to the test data file which can be used to test the new wizards. Added a new section on the index page (links not working).

comment:6 by Nicklas Nordborg, 11 years ago

(In [1746]) References #422: Implement wizards for RNA->cDNA processing

Installing 'Stratagene' as a pre-defined extract so that we can use it in the wizards.

Also updated the Rna.findRnaWithoutQc() method so that it ignores all extracts that doesn't have a creation date.

comment:7 by Nicklas Nordborg, 11 years ago

Description: modified (diff)
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