Opened 5 years ago

Closed 5 years ago

#403 closed defect (fixed)

NullPointerException when using the TDMS exporter

Reported by: nicklas Owned by: nicklas
Priority: major Milestone: MeV Launcher 1.10
Component: net.sf.basedb.mev Keywords:
Cc:

Description

From the mailing list: http://www.mail-archive.com/basedb-users@lists.sourceforge.net/msg02075.html

Running base v3.1.1 with mev-launcher-1.9 binary (current base version and MeV version 4.7.3) on Centos6. Tried to export a bioassay set of two bioassays to a TDMS file for analysis in MeV and got a unnamed error with the following stack trace:

java.lang.NullPointerException
  at net.sf.basedb.mev.export.TdmsExporter.addReporterFields(TdmsExporter.java:290)
  at net.sf.basedb.mev.export.TdmsExporter.beginExport(TdmsExporter.java:107)
  at net.sf.basedb.util.export.spotdata.AbstractBioAssaySetExporter.doExport(AbstractBioAssaySetExporter.java:277)
  at net.sf.basedb.mev.plugin.TdmsExporterPlugin.performExport(TdmsExporterPlugin.java:263)
  at net.sf.basedb.core.plugin.AbstractExporterPlugin.run(AbstractExporterPlugin.java:144)
  at net.sf.basedb.core.PluginExecutionRequest.invoke(PluginExecutionRequest.java:116)
  at net.sf.basedb.core.InternalJobQueue$JobRunner.run(InternalJobQueue.java:510)
  at java.lang.Thread.run(Thread.java:662)

The workaround is to use the 'clone reporters' function for the experiment to create a cloned set of reporter annotations.

Change History (1)

comment:1 Changed 5 years ago by nicklas

  • Resolution set to fixed
  • Status changed from new to closed

(In [1700]) Fixes #403: NullPointerException? when using the TDMS exporter

Note: See TracTickets for help on using tickets.