Opened 9 years ago

Closed 8 years ago

#366 closed task (fixed)

Import annotations and other information from Caliper output

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Reggie v2.4
Component: net.sf.basedb.reggie Keywords:
Cc:

Description (last modified by Nicklas Nordborg)

This is related to #365 and #364.

When the Caliper has finished we get two or three files. One file with an unknown proprietary format (*.gdx) that we just want to store in BASE, one csv file with information that we want to import in BASE and possible one pdf with graphs and other documentation.

A reggie wizard should take care of everything and then mark the plate as destroyed so that it doesn't show up again in the other wiazards.

Change History (12)

comment:1 Changed 9 years ago by Nicklas Nordborg

Status: newassigned

comment:2 Changed 9 years ago by Nicklas Nordborg

Description: modified (diff)

comment:3 Changed 9 years ago by Nicklas Nordborg

(In [1546]) References #366: Import annotations and other information from Caliper output

The important features has been implemented. There is still some more to do on the error handling side and maybe also on the usability side.

comment:4 Changed 9 years ago by Nicklas Nordborg

(In [1555]) References #366: Import annotations and other information from Caliper output

  • Fixes a problem with validation of the QCRunDate field.
  • Adding an example Caliper output csv file that can be used with the import wizard

comment:5 Changed 9 years ago by Nicklas Nordborg

(In [1556]) References #366: Import annotations and other information from Caliper output

  • Implement location verification against the csv file.
  • Added a "defect" output file so that we can test error handling in the import wizard.

comment:6 Changed 9 years ago by Nicklas Nordborg

(In [1557]) References #364, #365 and #366. Added a short note about the new wizards to the README.

comment:7 Changed 9 years ago by Nicklas Nordborg

(In [1561]) References #366: Import annotations and other information from Caliper output

  • Detect and handle problems with parsing numbers in the CSV file
  • Detect and report problems with duplicate measurements of the same well
  • Allow two GXD files. One for standard and one for hi-sense.

comment:8 Changed 9 years ago by Nicklas Nordborg

(In [1563]) References #366: Import annotations and other information from Caliper output

Handle values in brackets by replacing them with negative values. Eg. [8.0] --> -8.0. A warning message is displayed for the user after the import.

comment:9 Changed 9 years ago by Nicklas Nordborg

(In [1566]) References #366: Import annotations and other information from Caliper output

Use CA_RQS as annotation for Caliper instead of BA_RIN which is for Bioanalyzer

comment:10 Changed 9 years ago by Nicklas Nordborg

(In [1583]) References #364, #365, #366, #370. Show a message and animated 'loading' icon when waiting for JSON request to return data from server

comment:11 Changed 8 years ago by Nicklas Nordborg

(In [1616]) References #366: Import annotations and other information from Caliper output

The test data files was in sync and it was not possible to test the importer. Fixes a NPE when "QC Run Date" was missing.

comment:12 Changed 8 years ago by Nicklas Nordborg

Resolution: fixed
Status: assignedclosed
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