#331 closed task (fixed)
Updates required for BASE 3
| Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
|---|---|---|---|
| Priority: | major | Milestone: | ZZ Normalization package v1.1 |
| Component: | net.sf.basedb.normalizers | Keywords: | |
| Cc: |
Description
Need to make some packaging changes. Eg. Plugin definitions should be moved into extensions.xml. Plugin configurations file should be renamed to plugin-configurations.xml. Build script changes needed since BASE jar file have different names. See the net.sf.basedb.examples build script for ideas.
Verify that the code works with BASE 3.
Change History (4)
comment:1 by , 13 years ago
| Owner: | changed from to |
|---|---|
| Status: | new → assigned |
comment:2 by , 13 years ago
comment:3 by , 13 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
Since there are other tickets (#267 and #268) for getting rid of BioAssaySetExporter in the qQuantileNormalizer plug-in, I'll close this ticket as fixed.
I have tested the AverageNormalization, QuantileNormalization and RankInvariantNormalization and they run to completion and produces a result, so I'll assume that if there are any issues with them, they are not part of the BASE 2->BASE 3 upgrade and should be added as new tickets.
comment:4 by , 3 years ago
| Milestone: | Normalization package v1.1 → ZZ Normalization package v1.1 |
|---|
Milestone renamed
(In [1410]) References #331: Updates required for BASE 3 support
The code compiles and installs. The only exception is the
qQuantileNormalizerwhich uses theBioAssaySetExporter. This exporter has been removed in BASE 3 so this export needs to be re-implemented.