Opened 11 years ago

Closed 10 years ago

Last modified 10 years ago

#248 closed enhancement (fixed)

net.sf.basedb.illumina: The background correction plug-in should store the background intensity

Reported by: Jari Häkkinen Owned by: Jari Häkkinen
Priority: major Milestone: Illumina package v1.5
Component: net.sf.basedb.illumina Keywords:
Cc:

Description

Now the assays are background corrected but it would be nice to easily see what the correction values for each assay.

Change History (9)

comment:1 Changed 11 years ago by Jari Häkkinen

Milestone: Illumina package v1.x

comment:2 Changed 10 years ago by Jari Häkkinen

Milestone: Illumina package v1.xIllumina package v1.5
Owner: changed from Nicklas Nordborg to Jari Häkkinen
Status: newassigned

comment:3 Changed 10 years ago by Jari Häkkinen

(In [1205]) Addresses #248 and #252. Optionally creating and attaching background info file to transformation.

comment:4 Changed 10 years ago by Jari Häkkinen

(In [1206]) Addresses #248 and #252. File contains relevant information now. Mean is fixed, median needs to be fixed.

comment:5 Changed 10 years ago by Jari Häkkinen

(In [1207]) Addresses #248 and #252. Documentet parameter for saving background intensities file.

comment:6 Changed 10 years ago by Jari Häkkinen

(In [1210]) Addresses #248 and #252. Median fixed.

comment:7 Changed 10 years ago by Jari Häkkinen

Resolution: fixed
Status: assignedclosed

The numbers are stored in the background expression matrix file.

comment:8 Changed 10 years ago by Jari Häkkinen

(In [1211]) Addresses #248 and #252. Do not use 'externalId' field if save to file is not requested.

comment:9 Changed 10 years ago by Jari Häkkinen

(In [1217]) Addresses #248 and #252. Updated description to describe new features.

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