Opened 15 years ago
Closed 15 years ago
#240 closed Request (fixed)
Bead summary importer should have an option to fail if the number of skipped data lines get too high
| Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
|---|---|---|---|
| Priority: | major | Milestone: | Illumina package v1.4 |
| Component: | net.sf.basedb.illumina | Keywords: | |
| Cc: |
Description
The current implementation only allows a user to fail on the first "bad" line or to skip all bad lines. In some cases a small amount of "bad" lines are expected. But a larger amount may indicate a problem. See http://www.mail-archive.com/basedb-users@lists.sourceforge.net/msg01795.html for some background information.
We should add an extra option (smart?) to the "Probe not found" error handler and an extra parameter that allows the user to specify a percentage or an absolute value for the maximum number of data lines to skip. If more lines with "Probe not found" are found, the plug-in should fail. The "smart" option should probably be the default selection and 5% has been suggested as the default for the threshold value.
Change History (2)
comment:1 by , 15 years ago
| Status: | new → assigned |
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comment:2 by , 15 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
(In [1149]) Fixes #240: Bead summary importer should have an option to fail if the number of skipped data lines get too high