Opened 15 years ago

Closed 15 years ago

#171 closed enhancement (fixed)

IBS raw data importer should be able to handle floats in some columns

Reported by: Jari Häkkinen Owned by: Martin Svensson
Priority: major Milestone: Illumina package v1.3
Component: net.sf.basedb.illumina Keywords:
Cc:

Description

There are four columns in IBS files: Illumicode,N,Mean GRN,Dev GRN

The current importer implementation requires that the Mean GRN and Dev GRN columns are integers. The reason for this is that data generated by the Illumina scanner generates integers in these columns. However, if the IBS files comes from other sources then the mean and dev columns may be floats. I think we should support floats in these columns and the proposed change will not break the current functionality.

I have attached a sample file.

Attachments (1)

IlluminaFloat.data​ (1.7 MB ) - added by Jari Häkkinen 15 years ago.

Download all attachments as: .zip

Change History (3)

by Jari Häkkinen, 15 years ago

Attachment: IlluminaFloat.data​ added

comment:1 by Martin Svensson, 15 years ago

Owner: changed from Nicklas Nordborg to Martin Svensson
Status: new → assigned

comment:2 by Martin Svensson, 15 years ago

Resolution: → fixed
Status: assigned → closed

(In [943]) Fixes #171 IBS raw data importer should be able to handle floats in some columns

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