Opened 4 months ago

Closed 4 months ago

Last modified 4 months ago

#1251 closed enhancement (fixed)

Add a mode to SSP plugin that run models for all rawbioassays with no value

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Reggie v4.27.1
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

This would be useful if a new SSP model is added later. Then a single job could be used to run that model for all existing raw bioassays without having to batch them 500 by 500.

Change History (4)

comment:1 Changed 4 months ago by Nicklas Nordborg

In 5956:

References #1251: Add a mode to SSP plugin that run models for all rawbioassays with no value

Added an option to the "Start Single Sample Predictor" wizard that runs SSP for all raw bioassays that doesn't have a value already.

comment:2 Changed 4 months ago by Nicklas Nordborg

Resolution: fixed
Status: newclosed

comment:3 Changed 4 months ago by Nicklas Nordborg

In 5958:

References #1251: Add a mode to SSP plugin that run models for all rawbioassays with no value

Find out which raw bioassays that have missing SSP values before the job is scheduled so that items can be removed from the SSP item list and AutoProcessing can be reset, etc.

comment:4 Changed 4 months ago by Nicklas Nordborg

In 5959:

References #1251: Add a mode to SSP plugin that run models for all rawbioassays with no value

Added a cleanup method that remove each *.tsv file as soon as the SSP has used it.

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