Opened 6 months ago

Closed 4 months ago

#1216 closed enhancement (fixed)

Finalize the "Confirm MIPs demux" wizard

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Reggie v4.25
Component: net.sf.basedb.reggie Keywords:
Cc:

Description (last modified by Nicklas Nordborg)

This wizard is full with TODO that are mostly related to not knowing anything about the next step. The next step is "Alignment" (see #1218) so it should now be possible to finalize the "Confirm demux" wizard. We can prepare an item list for the MIPs alignment and add items to it.

Change History (10)

comment:1 Changed 6 months ago by Nicklas Nordborg

Description: modified (diff)

comment:2 Changed 6 months ago by Nicklas Nordborg

In 5787:

References #1216: Finalize the "Confirm MIPs demux" wizard

Added the "MIPs alignment pipeline" item list.

comment:3 Changed 6 months ago by Nicklas Nordborg

Resolution: fixed
Status: newclosed

In 5788:

Fixes #1216: Finalize the "Confirm MIPs demux" wizard

The wizard now display "Align" as the next step and also put selected items into the "MIPs Alignment Pipeline" list.

comment:4 Changed 6 months ago by Nicklas Nordborg

Resolution: fixed
Status: closedreopened

I think we should add columns with Libplate+location and Barcode information to the table.

comment:5 Changed 6 months ago by Nicklas Nordborg

In 5797:

References #1216: Finalize the "Confirm MIPs demux" wizard

Added some more columns: Plate, Barcode and MIPS_Panel. Also changed the sort order to sort by plate location.

comment:6 Changed 5 months ago by Nicklas Nordborg

In 5800:

References #1216: Finalize the "Confirm MIPs demux" wizard

Metrics file is split into individual files if demuxing multiple sequencing runs together.

comment:7 Changed 5 months ago by Nicklas Nordborg

In 5802:

References #1216: Finalize the "Confirm MIPs demux" wizard

Number of reads is formatted dynamically instead of in "thousands". This is due to the range of values is big and it was confusing to see and understand values such as '1234', '25.2' and '0.45' and compare them quickly. Now they will be displayed as '1.2M', '25.2k' and '450' instead.

comment:8 Changed 5 months ago by Nicklas Nordborg

In 5804:

References #1216: Finalize the "Confirm MIPs demux" wizard

The MIPs demux should not generate any warnings related to the number of reads since it is better if the pipeline runs to completion before checking quality and results.

comment:9 Changed 5 months ago by Nicklas Nordborg

In 5808:

References #1216: Finalize the "Confirm MIPs demux" wizard

The read string construction seems to work as expected.

comment:10 Changed 4 months ago by Nicklas Nordborg

Resolution: fixed
Status: reopenedclosed
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