Opened 15 months ago

Closed 15 months ago

Last modified 15 months ago

#1183 closed enhancement (fixed)

Change to picard 2.20.8 or later

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: Reggie v4.23.1
Component: net.sf.basedb.reggie Keywords:
Cc:

Description

This version includes an improvement in ExtractIlluminaBarcodes that makes it a lot faster when used with a large list of possible barcodes. Testing with our long list (2624 barcodes) reduced the time from ~2 hours to ~3 minutes.

The performance improvement was included already in picard 2.20.6 but it seemed to have a bug in the calculation of mismatches that caused some reads to be lost (~1%).

https://github.com/broadinstitute/picard/releases/tag/2.20.8

https://github.com/broadinstitute/picard/releases/tag/2.20.6

Change History (2)

comment:1 Changed 15 months ago by Nicklas Nordborg

Resolution: fixed
Status: newclosed

In 5616:

Fixes #1183: Change to picard 2.20.8 or later

comment:2 Changed 15 months ago by Nicklas Nordborg

Milestone: Reggie v4.24Reggie v4.23.1
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