Changes between Initial Version and Version 8 of Ticket #1160


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Timestamp:
Jun 26, 2019, 3:01:42 PM (5 years ago)
Author:
Nicklas Nordborg
Comment:

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  • Ticket #1160 – Description

    initial v8  
    44
    55However, we may not be able to just switch to the newer Picard due to our modifications. This ticket is about investigating potential issues.
     6
     7**To summarize our findings from below:**
     8
     9It should be possible to use the newer Picard version. All critical modification have also been fixed in Picard. The exception is Item 1 in Fork release 2, but this only affects 31 old sequencing runs and can be fixed by manually copying the `TileMetrics.bin` file.
     10
     11The remaining annoyance with all messages going to stderr should not prevent us from updating. If we can't get acceptable results by fixing code in Reggie, there is always the possibility to fork Picard again.