| 3 | | For background see #742. Picard has made some changes related to file size checks but it is not certain that it fixes our issues. This need to be tested. A quick check on the production server finds 25 sequencing runs (all of them on the !NextSeq) with this problem and they seem to happen every now and the. The last one was just a week ago. So, this item is a real problem that we need to verify if it has been fixed in Picard or if we need some other workaround. |
| | 3 | For background see #742. Picard has made some changes related to file size checks but it is not certain that it fixes our issues. This need to be tested. A quick check on the production server finds 25 sequencing runs (all of them on the !NextSeq) with this problem and they seem to happen every now and then. The last one was just a week ago. So, this item is a real problem that we need to verify if it has been fixed in Picard or if we need some other workaround. |
| | 4 | |
| | 5 | I have a made test run with a demux and it seems like Picard is able to handle this without crashing. On the other hand our code crashed when trying import data from the `demultiplex_metrics.txt` file. The reason was that there are more columns that causes our regular expressions to not find the data. |
